Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8218300.1

Orthogroup ID

OG0009182

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 491

Gene Structure 491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8218300.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggcggactggtctctactccctaaagaactcctggaggacatcgccaaacgcctcggcagctcattctatctcctccgtttccgatccgtctgctcctcatggcgatcatcaatcccttcccgacctcgccgcttacccggccgattccccttcctcacaaactacggcatctccgactccgccctcggtttccacctctcgaaacgcaccgttttcctcatcggaccgcccgaaagcccggatcggtggctggtcaagatcgaagaggacgtgcccggccgcatgcacttgctgaatcccctctcgcggttgccgctgagtcctctgccggaggctttcccaaaggtactggatttatcgaggttttggattttcgatttgggggaggagtatgttcttcattgtgtgaattttaggcctttggtcaatgctctgggcggtgctgctaatttgtacatggaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

156

Amino Acids

17.87

Weight (kDa)

9.3

Isoelectric Point (pI)

73.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17030 AT2G17036 AT2G17036
fragaria_vesca	FvH4_2g15930 FvH4_2g15930 FvH4_2g15930
malus_domestica	MD05G1128300.v1.1
prunus_persica	Prupe.8G172400_v2.0.a1 Prupe.8G172400_v2.0.a1
pyrus_communis	pycom05g12420
rosa_chinensis	RchiOBHm_Chr6g0279451
rosa_laevigata	RLG00000013146
rosa_multiflora	Rmu_co8218300.1_g000001 Rmu_sc0000274.1_g000005 Rmu_sc0034735.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188900
rosa_rugosa	Rorug06G0124300
rosa_samantha	Rh6AG233600 Rh6BG237900 Rh6CG239900 Rh6DG231600
rosa_wichuraiana	Rw6G020380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	310
AciI	CCGC	8 cut(s)	5, 133, 183, 230, 283, 310, 317, 441
AclWI	GGATC	2 cut(s)	81, 252
AcoI	YGGCCR	2 cut(s)	142, 280
AcsI	RAATTY	1 cut(s)	412
AfaI	GTAC	2 cut(s)	351, 458
AfiI	CCNNNNNNNGG	1 cut(s)	309
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	81, 252
AoxI	GGCC	3 cut(s)	142, 280, 419
ApeKI	GCWGC	2 cut(s)	60, 446
ApoI	RAATTY	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	3 cut(s)	141, 242, 279
AvaII	GGWCC	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	72, 433
BceAI	ACGGC	1 cut(s)	184
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	1 cut(s)	35
BcnI	CCSGG	3 cut(s)	141, 242, 279
BcoDI	GTCTC	1 cut(s)	18
BisI	GCNGC	5 cut(s)	61, 133, 283, 317, 447
BlsI	GCNGC	5 cut(s)	62, 134, 284, 318, 448
Bme1390I	CCNGG	4 cut(s)	35, 141, 242, 279
Bme18I	GGWCC	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	4 cut(s)	35, 141, 242, 279
BmsI	GCATC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	56
BpuMI	CCSGG	3 cut(s)	141, 242, 279
BsaI	GGTCTC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	55, 187
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse1I	ACTGG	2 cut(s)	14, 357
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	55, 187
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	2 cut(s)	14, 357
BseRI	GAGGAG	3 cut(s)	65, 88, 404
BseSI	GKGCMC	1 cut(s)	279
BseX3I	CGGCCG	2 cut(s)	142, 280
BseXI	GCAGC	2 cut(s)	72, 433
Bsh1236I	CGCG	1 cut(s)	310
Bsh1285I	CGRYCG	2 cut(s)	145, 283
BshFI	GGCC	3 cut(s)	144, 282, 421
BsiEI	CGRYCG	2 cut(s)	145, 283
BsiSI	CCGG	4 cut(s)	141, 242, 279, 332
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	18
BsnI	GGCC	3 cut(s)	144, 282, 421
Bso31I	GGTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp1407I	TGTACA	1 cut(s)	456
Bsp143I	GATC	4 cut(s)	86, 107, 244, 261
BspACI	CCGC	8 cut(s)	5, 133, 183, 230, 283, 310, 317, 441
BspANI	GGCC	3 cut(s)	144, 282, 421
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	310
BspPI	GGATC	2 cut(s)	81, 252
BspTNI	GGTCTC	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	14, 357
BssECI	CCNNGG	2 cut(s)	55, 187
BssMI	GATC	4 cut(s)	86, 107, 244, 261
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	261
BstAUI	TGTACA	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	320
BstFNI	CGCG	1 cut(s)	310
BstKTI	GATC	4 cut(s)	89, 110, 247, 264
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	4 cut(s)	86, 107, 244, 261
BstMCI	CGRYCG	2 cut(s)	145, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 141, 316
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	4 cut(s)	33, 139, 240, 277
BstSLI	GKGCMC	1 cut(s)	279
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	72, 433
BstZI	CGGCCG	2 cut(s)	142, 280
BsuRI	GGCC	3 cut(s)	144, 282, 421
BtgZI	GCGATG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	227
CpoI	CGGWCCG	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	350, 457
CspI	CGGWCCG	1 cut(s)	227
CviAII	CATG	3 cut(s)	102, 286, 460
CviJI	RGCY	7 cut(s)	63, 144, 240, 253, 282, 338, 421
CviKI_1	RGCY	7 cut(s)	63, 144, 240, 253, 282, 338, 421
CviQI	GTAC	2 cut(s)	350, 457
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	4 cut(s)	88, 109, 246, 263
DpnII	GATC	4 cut(s)	86, 107, 244, 261
EaeI	YGGCCR	2 cut(s)	142, 280
EagI	CGGCCG	2 cut(s)	142, 280
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	2 cut(s)	20, 172
EclXI	CGGCCG	2 cut(s)	142, 280
Eco147I	AGGCCT	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	227
Eco52I	CGGCCG	2 cut(s)	142, 280
EcoRII	CCWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	105, 289, 463
FaiI	YATR	4 cut(s)	103, 287, 396, 461
FatI	CATG	3 cut(s)	101, 285, 459
Fnu4HI	GCNGC	5 cut(s)	61, 133, 283, 317, 447
Fsp4HI	GCNGC	5 cut(s)	61, 133, 283, 317, 447
GluI	GCNGC	5 cut(s)	61, 133, 283, 317, 447
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	3 cut(s)	144, 282, 421
HapII	CCGG	4 cut(s)	141, 242, 279, 332
Hin1II	CATG	3 cut(s)	105, 289, 463
HinfI	GANTC	4 cut(s)	147, 179, 298, 322
HpaII	CCGG	4 cut(s)	141, 242, 279, 332
Hpy188I	TCNGA	3 cut(s)	86, 178, 227
Hpy188III	TCNNGA	3 cut(s)	123, 202, 259
HpyAV	CCTTC	2 cut(s)	129, 163
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 141, 316
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	105, 289, 463
Kzo9I	GATC	4 cut(s)	86, 107, 244, 261
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	9 cut(s)	20, 47, 154, 239, 255, 292, 338, 345, 422
Lsp1109I	GCAGC	2 cut(s)	72, 433
LweI	GCATC	1 cut(s)	180
MaeII	ACGT	1 cut(s)	273
MalI	GATC	4 cut(s)	88, 109, 246, 263
MboI	GATC	4 cut(s)	86, 107, 244, 261
MboII	GAAGA	2 cut(s)	278, 392
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	2 cut(s)	412, 451
MlyI	GAGTC	2 cut(s)	173, 331
MmeI	TCCRAC	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	4 cut(s)	141, 242, 279, 332
MspR9I	CCNGG	4 cut(s)	35, 141, 242, 279
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	60, 141, 316
NciI	CCSGG	3 cut(s)	141, 242, 279
NdeII	GATC	4 cut(s)	86, 107, 244, 261
NlaIII	CATG	3 cut(s)	105, 289, 463
NmeAIII	GCCGAG	1 cut(s)	36
NspI	RCATGY	1 cut(s)	289
PaeI	GCATGC	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	3 cut(s)	174, 231, 270
PfeI	GAWTC	2 cut(s)	147, 298
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	5 cut(s)	62, 134, 284, 318, 448
PleI	GAGTC	2 cut(s)	173, 330
PpsI	GAGTC	2 cut(s)	173, 330
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	227
RsaI	GTAC	2 cut(s)	351, 458
RsaNI	GTAC	2 cut(s)	350, 457
Rsr2I	CGGWCCG	1 cut(s)	227
RsrII	CGGWCCG	1 cut(s)	227
SatI	GCNGC	5 cut(s)	61, 133, 283, 317, 447
Sau3AI	GATC	4 cut(s)	86, 107, 244, 261
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	2 cut(s)	173, 331
ScrFI	CCNGG	4 cut(s)	35, 141, 242, 279
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	6 cut(s)	65, 130, 201, 276, 351, 368
SfaNI	GCATC	1 cut(s)	180
SinI	GGWCC	1 cut(s)	227
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	2 cut(s)	412, 451
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	8 cut(s)	5, 133, 183, 230, 283, 310, 317, 441
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	4 cut(s)	33, 139, 240, 277
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	4 cut(s)	203, 264, 362, 378
TasI	AATT	2 cut(s)	412, 451
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	3 cut(s)	135, 285, 319
TfiI	GAWTC	2 cut(s)	147, 298
TseI	GCWGC	2 cut(s)	60, 446
TspDTI	ATGAA	1 cut(s)	392
TspGWI	ACGGA	2 cut(s)	68, 79
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.