Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009182

Physical Location & Seq

Genomic Coordinates Forward (+)

7403693 .. 7405262

Gene Structure 1570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17036.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGATGGATTGGGCAACACTGCCAAAGGATCTCTTAGACCTGATCTCCAAATGTCTAGAATCTTCCTTTGATCTCATACAGTTCCGTTCTGTATGTTCTTCATGGCGATCTGCCGCGGGGCCAAAGCGCCTTCTCTGGGCACATAACCTCCCGTTCTTCCCCTCTGATGACAAACCCTTTCTCTCCAATGTAATCCTCCGCGTCGCGCACCAGAGTATTTTACTTATCAAGCCTAATGAACCGCAATGCGAGGCGGATCTGTTTGGATGGATTGTCAAGGTTTGGGATAACATATATGTATCTCGTAAGATGACCCTTCTCAAACCGTTGAGTTCTTCAAGAAACTACTTTCCTCAGCATTTACCTCGTATTTTCGATATGTCTAAGTTTACGGTTCGTGAATTGTGTCGGGAAGTCAAGCTCTATCATCCTGATTACTACTGTGTCCCTGGACACACAGCTTTAGAGTTGGAGTTGGGGAAAACTGTTGTCAAGTACCTAAATGATGACAAATTCGTGTTGCTTACAATTCTTGAATATGGAAAGTTAGCTGTGTTTAGGTCTTGGGATCGAGAATGGACTGTGATCAATGATTACATACCTTCTCGTTGTCAAGATTTGATTATGTTCGATGGACGTTTCTTTGCTATCGACTACAATGGGAGGACTGTAGTTGTTGACTACTCTTCTTTCAAATTGACATTGGCCGCTAATCCTTTGATTGGCGGCGGTGACAAGAAGTTTCTGATTGAATCTTGTGGTGAAATGTTTCTGGTGGATATAGAGTTTTGCCTGAATGAAAAACCGGAATTCACAGGGGGTTTCTATTCGTATTTTAATGAGACCACGGTCAGTTACAAATTTAAATTCTTTAAATTAGTGGAAAGAGAGAAGAGATGGGTTGAGGTTGAGGATCTTGGGGATAAGATGTTTTTCCTTGGTGATGACTCCACCTTTTCCGCTTCAACTGCTGATATTATACCTCGCTGCGTGGGAACTGGAAGCTTCGTGTTCTTCTACACGCATGAGGAATCCTTGGTGGTGATGGATGATCGAAACTTGGGAGTGTTTGATTTCAGGAGTGGGAAAACAGAGCTGGTAAACAAACTCCCTGAATATGCCAAGTTGTTTTGGCCTCCACCTCCATGGATTACTACTTCTCATGAGAGTGTTGAAAATTATACTGGAGAAACATCATCACAATCCCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

404

Amino Acids

46.81

Weight (kDa)

5.43

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	77 - 357	8.8e-35	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17030 AT2G17036 AT2G17036
fragaria_vesca	FvH4_2g15930 FvH4_2g15930 FvH4_2g15930
malus_domestica	MD05G1128300.v1.1
prunus_persica	Prupe.8G172400_v2.0.a1 Prupe.8G172400_v2.0.a1
pyrus_communis	pycom05g12420
rosa_chinensis	RchiOBHm_Chr6g0279451
rosa_laevigata	RLG00000013146
rosa_multiflora	Rmu_co8218300.1_g000001 Rmu_sc0000274.1_g000005 Rmu_sc0034735.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188900
rosa_rugosa	Rorug06G0124300
rosa_samantha	Rh6AG233600 Rh6BG237900 Rh6CG239900 Rh6DG231600
rosa_wichuraiana	Rw6G020380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	116, 201, 206
AciI	CCGC	9 cut(s)	114, 116, 199, 242, 254, 708, 726, 729, 960
AclWI	GGATC	4 cut(s)	36, 264, 576, 921
AcoI	YGGCCR	1 cut(s)	705
AcsI	RAATTY	4 cut(s)	512, 809, 860, 866
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	2 cut(s)	136, 722
AgsI	TTSAA	6 cut(s)	339, 536, 694, 752, 966, 1175
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	5 cut(s)	421, 461, 551, 1005, 1096
AluI	AGCT	5 cut(s)	421, 461, 551, 1005, 1096
Alw26I	GTCTC	1 cut(s)	836
AlwI	GGATC	4 cut(s)	36, 264, 576, 921
AoxI	GGCC	3 cut(s)	119, 705, 1133
ApeKI	GCWGC	1 cut(s)	987
ApoI	RAATTY	4 cut(s)	512, 809, 860, 866
Asp700I	GAANNNNTTC	1 cut(s)	768
AspLEI	GCGC	2 cut(s)	129, 208
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	4 cut(s)	743, 773, 953, 1054
BaeGI	GKGCMC	1 cut(s)	142
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	974
BccI	CCATC	4 cut(s)	261, 626, 891, 1039
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	1 cut(s)	585
BcoDI	GTCTC	1 cut(s)	836
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	130
BisI	GCNGC	4 cut(s)	114, 708, 727, 988
BlsI	GCNGC	4 cut(s)	115, 709, 728, 989
Bme1390I	CCNGG	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	450
BoxI	GACNNNNGTC	1 cut(s)	848
BpmI	CTGGAG	1 cut(s)	1206
Bpu10I	CCTNAGC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	6 cut(s)	114, 448, 846, 937, 1035, 1145
BsaWI	WCCGGW	1 cut(s)	805
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 132, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 722
Bse1I	ACTGG	2 cut(s)	1003, 1189
Bse3DI	GCAATG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	6 cut(s)	114, 448, 846, 937, 1035, 1145
BseGI	GGATG	3 cut(s)	272, 427, 1054
BseLI	CCNNNNNNNGG	2 cut(s)	136, 722
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	2 cut(s)	1003, 1189
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	974
Bsh1236I	CGCG	3 cut(s)	116, 201, 206
BshFI	GGCC	3 cut(s)	121, 707, 1135
BsiSI	CCGG	1 cut(s)	806
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	2 cut(s)	136, 722
BsmAI	GTCTC	1 cut(s)	836
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	3 cut(s)	121, 707, 1135
Bso31I	GGTCTC	1 cut(s)	836
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	9 cut(s)	28, 42, 70, 107, 256, 568, 585, 913, 1051
Bsp19I	CCATGG	1 cut(s)	1145
BspACI	CCGC	9 cut(s)	114, 116, 199, 242, 254, 708, 726, 729, 960
BspANI	GGCC	3 cut(s)	121, 707, 1135
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	3 cut(s)	116, 201, 206
BspHI	TCATGA	1 cut(s)	1162
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	4 cut(s)	36, 264, 576, 921
BspTNI	GGTCTC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	1003, 1189
BssECI	CCNNGG	6 cut(s)	114, 448, 846, 937, 1035, 1145
BssMI	GATC	9 cut(s)	28, 42, 70, 107, 256, 568, 585, 913, 1051
BssT1I	CCWWGG	3 cut(s)	937, 1035, 1145
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	8 cut(s)	81, 327, 394, 443, 487, 583, 670, 850
Bst6I	CTCTTC	2 cut(s)	691, 887
BstDEI	CTNAG	3 cut(s)	34, 354, 384
BstDSI	CCRYGG	3 cut(s)	114, 846, 1145
BstF5I	GGATG	3 cut(s)	272, 427, 1054
BstFNI	CGCG	3 cut(s)	116, 201, 206
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	129, 208
BstKTI	GATC	9 cut(s)	31, 45, 73, 110, 259, 571, 588, 916, 1054
BstMAI	GTCTC	1 cut(s)	836
BstMBI	GATC	9 cut(s)	28, 42, 70, 107, 256, 568, 585, 913, 1051
BstMWI	GCNNNNNNNGC	1 cut(s)	968
BstNI	CCWGG	1 cut(s)	450
BstPAI	GACNNNNGTC	1 cut(s)	848
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	1 cut(s)	142
BstUI	CGCG	3 cut(s)	116, 201, 206
BstV1I	GCAGC	1 cut(s)	974
BstX2I	RGATCY	3 cut(s)	28, 256, 913
BstXI	CCANNNNNNTGG	1 cut(s)	1146
BstYI	RGATCY	3 cut(s)	28, 256, 913
BsuRI	GGCC	3 cut(s)	121, 707, 1135
BtgI	CCRYGG	3 cut(s)	114, 846, 1145
BtsCI	GGATG	3 cut(s)	272, 427, 1054
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	17
CciI	TCATGA	1 cut(s)	1162
CfoI	GCGC	2 cut(s)	129, 208
Cfr13I	GGNCC	1 cut(s)	119
Cfr42I	CCGCGG	1 cut(s)	117
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	4 cut(s)	102, 1025, 1146, 1163
CviJI	RGCY	9 cut(s)	121, 232, 421, 461, 551, 707, 1005, 1096, 1135
CviKI_1	RGCY	9 cut(s)	121, 232, 421, 461, 551, 707, 1005, 1096, 1135
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	3 cut(s)	34, 354, 384
DpnI	GATC	9 cut(s)	30, 44, 72, 109, 258, 570, 587, 915, 1053
DpnII	GATC	9 cut(s)	28, 42, 70, 107, 256, 568, 585, 913, 1051
DraI	TTTAAA	2 cut(s)	865, 874
EaeI	YGGCCR	1 cut(s)	705
Eam1104I	CTCTTC	2 cut(s)	691, 887
EarI	CTCTTC	2 cut(s)	691, 887
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	3 cut(s)	937, 1035, 1145
Eco31I	GGTCTC	1 cut(s)	836
EcoRI	GAATTC	1 cut(s)	809
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	3 cut(s)	937, 1035, 1145
ErhI	CCWWGG	3 cut(s)	937, 1035, 1145
FaeI	CATG	4 cut(s)	105, 1028, 1149, 1166
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	4 cut(s)	101, 1024, 1145, 1162
FauI	CCCGC	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	585
Fnu4HI	GCNGC	4 cut(s)	114, 708, 727, 988
FokI	GGATG	3 cut(s)	279, 414, 1061
Fsp4HI	GCNGC	4 cut(s)	114, 708, 727, 988
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	2 cut(s)	128, 207
GluI	GCNGC	4 cut(s)	114, 708, 727, 988
GsuI	CTGGAG	1 cut(s)	1206
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	121, 707, 1135
HapII	CCGG	1 cut(s)	806
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	2 cut(s)	129, 208
Hin1II	CATG	4 cut(s)	105, 1028, 1149, 1166
Hin6I	GCGC	2 cut(s)	127, 206
HinP1I	GCGC	2 cut(s)	127, 206
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HindIII	AAGCTT	1 cut(s)	1003
HinfI	GANTC	4 cut(s)	59, 752, 947, 1031
HpaII	CCGG	1 cut(s)	806
HphI	GGTGA	4 cut(s)	743, 773, 953, 1054
Hpy166II	GTNNAC	3 cut(s)	390, 679, 1102
Hpy188I	TCNGA	2 cut(s)	166, 747
Hpy8I	GTNNAC	3 cut(s)	390, 679, 1102
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	140, 326, 612
HpyCH4III	ACNGT	8 cut(s)	81, 327, 394, 443, 487, 583, 670, 850
HpyCH4IV	ACGT	1 cut(s)	637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	968
HpyF3I	CTNAG	3 cut(s)	34, 354, 384
HpySE526I	ACGT	1 cut(s)	637
Hsp92II	CATG	4 cut(s)	105, 1028, 1149, 1166
HspAI	GCGC	2 cut(s)	127, 206
Ksp22I	TGATCA	1 cut(s)	585
KspI	CCGCGG	1 cut(s)	117
Kzo9I	GATC	9 cut(s)	28, 42, 70, 107, 256, 568, 585, 913, 1051
Lsp1109I	GCAGC	1 cut(s)	974
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	637
MaeIII	GTNAC	2 cut(s)	731, 854
MalI	GATC	9 cut(s)	30, 44, 72, 109, 258, 570, 587, 915, 1053
MboI	GATC	9 cut(s)	28, 42, 70, 107, 256, 568, 585, 913, 1051
MboII	GAAGA	7 cut(s)	54, 90, 148, 327, 678, 904, 1006
MflI	RGATCY	3 cut(s)	28, 256, 913
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	9 cut(s)	401, 512, 528, 695, 809, 860, 866, 875, 1177
MlyI	GAGTC	1 cut(s)	941
MmeI	TCCRAC	1 cut(s)	450
MroXI	GAANNNNTTC	1 cut(s)	768
MseI	TTAA	3 cut(s)	837, 864, 873
MslI	CAYNNNNRTG	2 cut(s)	1144, 1167
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	806
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	3 cut(s)	116, 201, 206
MwoI	GCNNNNNNNGC	1 cut(s)	968
NcoI	CCATGG	1 cut(s)	1145
NdeII	GATC	9 cut(s)	28, 42, 70, 107, 256, 568, 585, 913, 1051
NlaIII	CATG	4 cut(s)	105, 1028, 1149, 1166
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	731
PagI	TCATGA	1 cut(s)	1162
PdmI	GAANNNNTTC	1 cut(s)	768
PfeI	GAWTC	3 cut(s)	59, 752, 1031
PkrI	GCNGC	4 cut(s)	115, 709, 728, 989
PleI	GAGTC	1 cut(s)	941
PpsI	GAGTC	1 cut(s)	941
PshAI	GACNNNNGTC	1 cut(s)	848
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	119
PsuI	RGATCY	3 cut(s)	28, 256, 913
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
RseI	CAYNNNNRTG	2 cut(s)	1144, 1167
SacII	CCGCGG	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	837, 864, 873
SatI	GCNGC	4 cut(s)	114, 708, 727, 988
Sau3AI	GATC	9 cut(s)	28, 42, 70, 107, 256, 568, 585, 913, 1051
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	941
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	669
Sfr303I	CCGCGG	1 cut(s)	117
SgrBI	CCGCGG	1 cut(s)	117
SmiI	ATTTAAAT	1 cut(s)	865
SmiMI	CAYNNNNRTG	2 cut(s)	1144, 1167
Sse9I	AATT	9 cut(s)	401, 512, 528, 695, 809, 860, 866, 875, 1177
SsiI	CCGC	9 cut(s)	114, 116, 199, 242, 254, 708, 726, 729, 960
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	3 cut(s)	937, 1035, 1145
SwaI	ATTTAAAT	1 cut(s)	865
TaaI	ACNGT	8 cut(s)	81, 327, 394, 443, 487, 583, 670, 850
TaiI	ACGT	1 cut(s)	640
TaqI	TCGA	5 cut(s)	375, 571, 630, 651, 1054
TasI	AATT	9 cut(s)	401, 512, 528, 695, 809, 860, 866, 875, 1177
TauI	GCSGC	3 cut(s)	116, 710, 729
TfiI	GAWTC	3 cut(s)	59, 752, 1031
Tru1I	TTAA	3 cut(s)	837, 864, 873
Tru9I	TTAA	3 cut(s)	837, 864, 873
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	1 cut(s)	987
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	3 cut(s)	90, 252, 813
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	24
XapI	RAATTY	4 cut(s)	512, 809, 860, 866
XbaI	TCTAGA	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	768
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.