pycom05g12420

f-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
15885260 .. 15887908
2649 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g12420.1

Sequence Viewer

Length: 1236 bp
ATGGCCGACTGGTCTAAACTTCCCAAAGACCTCCTAGAAGAAATCGCCAGACGCCTAGAGAGCGCCTTCTACTTGCTCCGTTTCCGATCCGTCTGCTCCTCATGGCGGTCCTCCGTCACCTCCCGACCTCGCCGTCTACCTGGCCGATTTCCCTTCCTCACAAACCACGGTATCTGCGCCACCTCCCTAGGGTTCCACCTCTCCCAGCGCAGCATTTTCCTGATGGGTTTGCCCAATTCCCGCAACCAAAGAGACCCAGATCGCTGGCTGGTCAAGATCGAAGAGGACGTACCGGGTCGAATGCACTTGCTGAATCCTCTCTCGCGGTTTCAGCTGAAGCCGCTGCCCGAAGCATTTCCGAAGGTATTGGATTTATCGAAATTTAGTGTTTTGGAGTTGGGTGGAGAATTTGTTTTGCATTATGTCCATTTTAGGCCTTTTGGGAATGGCAATTCTTTGGTCGATGATGGCAATTTGTATATGGAAAAGGTGGTTTTTATGTGTTCGGGTTCCGAAAGCAACGATTTTGTGCTTCTTACGATTCATGTGTCTGGGAAATTAGCAATGTTTAAGTCTGAGGATAAGAGGTGGACTATAATTCATGATATGCCATCGCCTTACGATGATGTTATAATGTTTAAAGGACAATTTTATGCTGTTGATGGCACTGGCCGGACTGTGACGGTGGGGTTGAATTCGAATTTGAGCTTGGTTGCGAATCCGGTGTTTGGTGGTGATAAGAAGTTTTTGGTTGAATCGAGTGGCGAATTGCTGGTGGTTGATATGTACTTGAGCATCGCTGCGCCAGAGGATTTGGATGATTTGGATGTCGATGATGAAGTTTTACAAATGCAATTCAGTGGTTGTTTGACTGAGAGAACTGTTAGGTTCGAGGTTTTTAAGTTGGATAGAGAGGGGAAGAAGTTGGTTGAAATGAAAAGCTTGGGGGATAGGGTGTTGTTTTTGGGGGATGACTGCACATTTTCTGCCTCGGCTTCCCAGTTATCGGGTTGTAAAGGGAATTGTATACTTTTCACGGATAATTTCTTCTATATGGGCAGTGAAGAAGAGTGTGTCTTCAAGGCCCGCGATATAGGTGTGTTTGACTTGGATGATGGTGGTATTGCACCGTTATCTGATTACCCAGAGTATTCAAAGTTGTTTTGGCCACCCCCTGACTGGGTTGCATCGACAACGTCAGAAGTGCAAACTCAGCTTGAAGAATTGGCTATATGA

Protein Analysis

412

Amino Acids

46.4

Weight (kDa)

4.97

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 44 1.3e-06 F-box domain
Beta-prop_KIB1-4 PF03478 66 - 369 1.8e-53 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 632
AasI GACNNNNNNGTC 1 cut(s) 132
AccI GTMKAC 2 cut(s) 136, 1027
AccII CGCG 2 cut(s) 325, 1089
AciI CCGC 5 cut(s) 106, 241, 325, 341, 1087
AclWI GGATC 1 cut(s) 81
AcoI YGGCCR 4 cut(s) 3, 142, 670, 1166
AcsI RAATTY 4 cut(s) 380, 407, 694, 700
AcuI CTGAAG 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 52
AfaI GTAC 2 cut(s) 291, 788
AfiI CCNNNNNNNGG 6 cut(s) 105, 189, 728, 1006, 1179, 1180
AgsI TTSAA 6 cut(s) 694, 755, 932, 1081, 1155, 1220
AjnI CCWGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 692, 724
AluBI AGCT 4 cut(s) 334, 708, 942, 1216
AluI AGCT 4 cut(s) 334, 708, 942, 1216
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 1 cut(s) 81
AoxI GGCC 6 cut(s) 3, 142, 434, 670, 1083, 1166
ApeKI GCWGC 3 cut(s) 210, 343, 800
ApoI RAATTY 4 cut(s) 380, 407, 694, 700
Asp700I GAANNNNTTC 1 cut(s) 354
AspA2I CCTAGG 1 cut(s) 187
AspLEI GCGC 4 cut(s) 65, 179, 210, 805
AspS9I GGNCC 2 cut(s) 108, 1084
AsuC2I CCSGG 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 109, 746
AsuII TTCGAA 1 cut(s) 698
AvaII GGWCC 1 cut(s) 108
AvrII CCTAGG 1 cut(s) 187
BaeI ACNNNNGTAYC 2 cut(s) 154, 187
BalI TGGCCA 1 cut(s) 1168
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BbsI GAAGAC 1 cut(s) 1069
BbvI GCAGC 3 cut(s) 222, 330, 787
BccI CCATC 5 cut(s) 217, 461, 619, 656, 1109
BceAI ACGGC 1 cut(s) 117
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 1 cut(s) 141
BcnI CCSGG 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 3 cut(s) 35, 56, 188
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 4 cut(s) 211, 341, 344, 801
BlnI CCTAGG 1 cut(s) 187
BlsI GCNGC 4 cut(s) 212, 342, 345, 802
Bme1390I CCNGG 2 cut(s) 141, 294
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 108, 1084
BmiI GGNNCC 2 cut(s) 194, 511
BmrFI CCNGG 2 cut(s) 141, 294
BmrI ACTGGG 2 cut(s) 994, 1189
BmsI GCATC 2 cut(s) 804, 1196
BmuI ACTGGG 2 cut(s) 994, 1189
BpiI GAAGAC 1 cut(s) 1069
Bpu14I TTCGAA 1 cut(s) 698
BpuEI CTTGAG 1 cut(s) 811
BpuMI CCSGG 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 166, 187, 990
BsaWI WCCGGW 1 cut(s) 721
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 6 cut(s) 105, 189, 728, 1006, 1179, 1180
Bse1I ACTGG 4 cut(s) 14, 673, 1000, 1184
Bse3DI GCAATG 1 cut(s) 570
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 3 cut(s) 166, 187, 990
BseGI GGATG 4 cut(s) 823, 832, 976, 1117
BseLI CCNNNNNNNGG 6 cut(s) 105, 189, 728, 1006, 1179, 1180
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 3 cut(s) 567, 864, 1226
BseNI ACTGG 4 cut(s) 14, 673, 1000, 1184
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 3 cut(s) 222, 330, 787
BseYI CCCAGC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 961
Bsh1236I CGCG 2 cut(s) 325, 1089
BshFI GGCC 6 cut(s) 5, 144, 436, 672, 1085, 1168
BsiSI CCGG 3 cut(s) 293, 673, 722
BslI CCNNNNNNNGG 6 cut(s) 105, 189, 728, 1006, 1179, 1180
BsmAI GTCTC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 306
BsnI GGCC 6 cut(s) 5, 144, 436, 672, 1085, 1168
Bso31I GGTCTC 1 cut(s) 246
Bsp119I TTCGAA 1 cut(s) 698
Bsp143I GATC 3 cut(s) 86, 259, 276
BspACI CCGC 5 cut(s) 106, 241, 325, 341, 1087
BspANI GGCC 6 cut(s) 5, 144, 436, 672, 1085, 1168
BspCNI CTCAG 3 cut(s) 568, 865, 1225
BspFNI CGCG 2 cut(s) 325, 1089
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 2 cut(s) 194, 511
BspPI GGATC 1 cut(s) 81
BspT104I TTCGAA 1 cut(s) 698
BspTNI GGTCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 570
BsrI ACTGG 4 cut(s) 14, 673, 1000, 1184
BssECI CCNNGG 3 cut(s) 166, 187, 990
BssMI GATC 3 cut(s) 86, 259, 276
BssNAI GTATAC 1 cut(s) 1028
BssNI GRCGYC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 187
Bst1107I GTATAC 1 cut(s) 1028
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 5 cut(s) 170, 679, 685, 883, 1131
Bst6I CTCTTC 2 cut(s) 276, 1062
BstACI GRCGYC 1 cut(s) 52
BstBI TTCGAA 1 cut(s) 698
BstC8I GCNNGC 2 cut(s) 266, 1087
BstDEI CTNAG 3 cut(s) 576, 873, 1212
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 4 cut(s) 823, 832, 976, 1117
BstFNI CGCG 2 cut(s) 325, 1089
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 4 cut(s) 65, 179, 210, 805
BstKTI GATC 3 cut(s) 89, 262, 279
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 3 cut(s) 86, 259, 276
BstMWI GCNNNNNNNGC 4 cut(s) 60, 331, 340, 1213
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 139, 292
BstUI CGCG 2 cut(s) 325, 1089
BstV1I GCAGC 3 cut(s) 222, 330, 787
BstV2I GAAGAC 1 cut(s) 1069
BstXI CCANNNNNNTGG 1 cut(s) 264
BstZ17I GTATAC 1 cut(s) 1028
BsuRI GGCC 6 cut(s) 5, 144, 436, 672, 1085, 1168
BtgI CCRYGG 1 cut(s) 166
BtgZI GCGATG 2 cut(s) 597, 781
BtsCI GGATG 4 cut(s) 823, 832, 976, 1117
BtsI GCAGTG 1 cut(s) 1066
BtsIMutI CAGTG 3 cut(s) 666, 865, 1066
Cac8I GCNNGC 2 cut(s) 266, 1087
CciI TCATGA 1 cut(s) 601
CfoI GCGC 4 cut(s) 65, 179, 210, 805
Cfr13I GGNCC 2 cut(s) 108, 1084
CseI GACGC 1 cut(s) 60
Csp6I GTAC 2 cut(s) 290, 787
CviAII CATG 3 cut(s) 102, 545, 602
CviQI GTAC 2 cut(s) 290, 787
DdeI CTNAG 3 cut(s) 576, 873, 1212
DpnI GATC 3 cut(s) 88, 261, 278
DpnII GATC 3 cut(s) 86, 259, 276
DraI TTTAAA 1 cut(s) 640
DrdI GACNNNNNNGTC 1 cut(s) 132
DseDI GACNNNNNNGTC 1 cut(s) 132
EaeI YGGCCR 4 cut(s) 3, 142, 670, 1166
Eam1104I CTCTTC 2 cut(s) 276, 1062
EarI CTCTTC 2 cut(s) 276, 1062
Eco130I CCWWGG 1 cut(s) 187
Eco147I AGGCCT 1 cut(s) 436
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 3 cut(s) 105, 548, 605
FatI CATG 3 cut(s) 101, 544, 601
FauI CCCGC 2 cut(s) 248, 1094
FblI GTMKAC 2 cut(s) 136, 1027
Fnu4HI GCNGC 4 cut(s) 211, 341, 344, 801
FokI GGATG 4 cut(s) 830, 839, 983, 1124
Fsp4HI GCNGC 4 cut(s) 211, 341, 344, 801
FspBI CTAG 3 cut(s) 35, 56, 188
GlaI GCGC 4 cut(s) 64, 178, 209, 804
GluI GCNGC 4 cut(s) 211, 341, 344, 801
GsaI CCCAGC 1 cut(s) 208
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 6 cut(s) 5, 144, 436, 672, 1085, 1168
HapII CCGG 3 cut(s) 293, 673, 722
HgaI GACGC 1 cut(s) 60
HhaI GCGC 4 cut(s) 65, 179, 210, 805
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 3 cut(s) 105, 548, 605
Hin6I GCGC 4 cut(s) 63, 177, 208, 803
HinP1I GCGC 4 cut(s) 63, 177, 208, 803
HindIII AAGCTT 1 cut(s) 940
HinfI GANTC 4 cut(s) 313, 541, 718, 755
HpaII CCGG 3 cut(s) 293, 673, 722
HphI GGTGA 2 cut(s) 109, 746
Hpy166II GTNNAC 3 cut(s) 137, 591, 1028
Hpy188I TCNGA 6 cut(s) 86, 360, 514, 577, 1138, 1201
Hpy188III TCNNGA 4 cut(s) 123, 220, 274, 602
Hpy8I GTNNAC 3 cut(s) 137, 591, 1028
HpyAV CCTTC 3 cut(s) 76, 163, 355
HpyCH4III ACNGT 5 cut(s) 170, 679, 685, 883, 1131
HpyCH4IV ACGT 2 cut(s) 288, 1196
HpyCH4V TGCA 7 cut(s) 304, 418, 853, 978, 1127, 1187, 1207
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 331, 340, 1213
HpyF3I CTNAG 3 cut(s) 576, 873, 1212
HpySE526I ACGT 2 cut(s) 288, 1196
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 3 cut(s) 105, 548, 605
HspAI GCGC 4 cut(s) 63, 177, 208, 803
Kzo9I GATC 3 cut(s) 86, 259, 276
LmnI GCTCC 2 cut(s) 81, 101
Lsp1109I GCAGC 3 cut(s) 222, 330, 787
LweI GCATC 2 cut(s) 804, 1196
MaeI CTAG 3 cut(s) 35, 56, 188
MaeII ACGT 2 cut(s) 288, 1196
MaeIII GTNAC 2 cut(s) 115, 679
MalI GATC 3 cut(s) 88, 261, 278
MboI GATC 3 cut(s) 86, 259, 276
MboII GAAGA 8 cut(s) 50, 293, 931, 1039, 1069, 1076, 1079, 1232
MlsI TGGCCA 1 cut(s) 1168
MluNI TGGCCA 1 cut(s) 1168
MmeI TCCRAC 1 cut(s) 885
Mox20I TGGCCA 1 cut(s) 1168
MroXI GAANNNNTTC 1 cut(s) 354
MscI TGGCCA 1 cut(s) 1168
MseI TTAA 3 cut(s) 570, 639, 900
Msp20I TGGCCA 1 cut(s) 1168
MspA1I CMGCKG 2 cut(s) 334, 343
MspI CCGG 3 cut(s) 293, 673, 722
MspR9I CCNGG 2 cut(s) 141, 294
Mva1269I GAATGC 1 cut(s) 306
MvaI CCWGG 1 cut(s) 141
MvnI CGCG 2 cut(s) 325, 1089
MwoI GCNNNNNNNGC 4 cut(s) 60, 331, 340, 1213
NciI CCSGG 1 cut(s) 294
NdeII GATC 3 cut(s) 86, 259, 276
NlaIII CATG 3 cut(s) 105, 548, 605
NlaIV GGNNCC 2 cut(s) 194, 511
NmeAIII GCCGAG 1 cut(s) 971
NmuCI GTSAC 2 cut(s) 115, 679
NspV TTCGAA 1 cut(s) 698
PagI TCATGA 1 cut(s) 601
PceI AGGCCT 1 cut(s) 436
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 4 cut(s) 313, 541, 718, 755
PflFI GACNNNGTC 1 cut(s) 1195
PkrI GCNGC 4 cut(s) 212, 342, 345, 802
PsiI TTATAA 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 2 cut(s) 194, 511
PspPI GGNCC 2 cut(s) 108, 1084
PsyI GACNNNGTC 1 cut(s) 1195
PvuII CAGCTG 1 cut(s) 334
RsaI GTAC 2 cut(s) 291, 788
RsaNI GTAC 2 cut(s) 290, 787
SaqAI TTAA 3 cut(s) 570, 639, 900
SatI GCNGC 4 cut(s) 211, 341, 344, 801
Sau3AI GATC 3 cut(s) 86, 259, 276
Sau96I GGNCC 2 cut(s) 108, 1084
ScrFI CCNGG 2 cut(s) 141, 294
SfaNI GCATC 2 cut(s) 804, 1196
SfuI TTCGAA 1 cut(s) 698
SinI GGWCC 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 790
SmoI CTYRAG 1 cut(s) 790
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 5 cut(s) 106, 241, 325, 341, 1087
SspMI CTAG 3 cut(s) 35, 56, 188
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 2 cut(s) 139, 292
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 5 cut(s) 170, 679, 685, 883, 1131
TaiI ACGT 2 cut(s) 291, 1199
TaqI TCGA 9 cut(s) 279, 298, 377, 462, 698, 758, 831, 891, 1190
TatI WGTACW 1 cut(s) 786
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 4 cut(s) 313, 541, 718, 755
Tru1I TTAA 3 cut(s) 570, 639, 900
Tru9I TTAA 3 cut(s) 570, 639, 900
TscAI CASTG 3 cut(s) 673, 865, 1066
TseFI GTSAC 2 cut(s) 115, 679
TseI GCWGC 3 cut(s) 210, 343, 800
Tsp45I GTSAC 2 cut(s) 115, 679
TspDTI ATGAA 4 cut(s) 533, 590, 852, 950
TspGWI ACGGA 4 cut(s) 68, 79, 103, 1052
TspRI CASTG 3 cut(s) 673, 865, 1066
Tth111I GACNNNGTC 1 cut(s) 1195
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 4 cut(s) 380, 407, 694, 700
XcmI CCANNNNNNNNNTGG 1 cut(s) 1176
XmaJI CCTAGG 1 cut(s) 187
XmiI GTMKAC 2 cut(s) 136, 1027
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 3 cut(s) 35, 56, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.