Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009182

Physical Location & Seq

Genomic Coordinates Reverse (-)

28663657 .. 28666546

Gene Structure 2890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00188900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGCGGACTGGTCTCTACTCCCTAAAGAACTCCTGGAGGACATCGCCAAACGCCTCGGCAGCTCATTCTATCTCCTCCGTTTCCGATCCGTCTGCTCCTCATGGCGATCATCAATCCCTTCCCGACCTCGCCGCTTACCCGGCCGATTTTCCTTCCTCACAAACTACGGCATCTCCGACTCCGCCCTCGGTTTCCACCTCTTTAAACGCACCGTTTTCCTGATCGGACCGCCCAAAAGCCCGGATCGGTGGCTGGTCAAGATCGAAGAGGACGTGCCCGGCCGCATGCACTTGCTGAATCCCCTCTCGCGGTTACCGCTGAGTCCTCTGCCGGAGGCTTTCCCAAAGGTAATGGATTTATCGAGGTTTTGGATTTTCGATTTGGGGGAGGAGTATGTTCTTCATTATGTGAATTTTAGGCCTTTGGTTAATGCTTTGGGCGGTGCTGCTAATTTGTACATGGAAAAGGTGGTGTTTATGTGTTTGGGGGATGAAAGCAGTGATTTTGTGTTGCTTACGATCCATGTGTCTGGGAAATTGGCAATTTTTAAGTCTGTGGACAAGAAGTGGACTATAATTCATGATATGCCGTCGCCTTATGATGATGTTATATTGTTTAAGGGCCAGTTTTATGCTGTTGATGGCACAGGGAGGACTGTGGTGGTTGGCTTGGACTCGAAAAATCCGAGTTTGGCTGCCAATCCGGTGTATGGTGGTGACAAGAAGTTTTTGGTGGAGTCGAGGGGTGAGTTGTTGGTGGTCGATATGTACTTGAGCACGGATGAGGAGGTGGATTGCGACGGGGATGATGAAATGTCTCAAGTGCAATTGGATGCGTGCATTTACGAGAGGACGGTGAAGTTTAAGGTTTATAAGATGGATGAAGGAGGGCAGAAGTTGGTGCGGATGAAAAGCTTGGGGGATAGGGTGTTGTTTTTGGGGGATGACTGCACATTTTCTGCCTCGGCTTCGGAGTTGTCCGGTTGTAAAGGGAATTGTATTTATTTTACAGATAATTTCTTCCATACAAGTGGTGAAGAAGAAGGGGTGTTCAAGGGTCGTGATATAGGTGTGTTTGATTTGGATAATGGTACTATTGCCCCCTTATCTGATTATCCAGAGTCTTCAAAGCTGTTTTGGCCACCCCCTGTGTGGCTTTCATCGACAACATCCCAGGTAAGTTTAGTTTCTCTTGATTTGGAAATACGTTTTGTGTTCCATGCACTTTTTATGTCTATCAATCTAATCAACTTGTGCCATGTTCCAACTTTACTTTTCACAAAATCGTATCTAACCCTGCCAAGTATAGTTCTCATTATAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

441

Amino Acids

49.62

Weight (kDa)

5.4

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	80 - 360	6.9e-54	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17030 AT2G17036 AT2G17036
fragaria_vesca	FvH4_2g15930 FvH4_2g15930 FvH4_2g15930
malus_domestica	MD05G1128300.v1.1
prunus_persica	Prupe.8G172400_v2.0.a1 Prupe.8G172400_v2.0.a1
pyrus_communis	pycom05g12420
rosa_chinensis	RchiOBHm_Chr6g0279451
rosa_laevigata	RLG00000013146
rosa_multiflora	Rmu_co8218300.1_g000001 Rmu_sc0000274.1_g000005 Rmu_sc0034735.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188900
rosa_rugosa	Rorug06G0124300
rosa_samantha	Rh6AG233600 Rh6BG237900 Rh6CG239900 Rh6DG231600
rosa_wichuraiana	Rw6G020380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	873
AccII	CGCG	1 cut(s)	310
AciI	CCGC	9 cut(s)	5, 133, 183, 230, 283, 310, 317, 441, 904
AclWI	GGATC	3 cut(s)	81, 252, 514
AcoI	YGGCCR	3 cut(s)	142, 280, 1139
AcsI	RAATTY	1 cut(s)	412
AfaI	GTAC	3 cut(s)	458, 770, 1093
AfiI	CCNNNNNNNGG	3 cut(s)	309, 710, 1152
AgsI	TTSAA	2 cut(s)	1054, 1128
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	2 cut(s)	33, 1173
AluBI	AGCT	3 cut(s)	63, 915, 1132
AluI	AGCT	3 cut(s)	63, 915, 1132
Alw21I	GWGCWC	1 cut(s)	779
Alw26I	GTCTC	2 cut(s)	18, 822
AlwI	GGATC	3 cut(s)	81, 252, 514
AoxI	GGCC	5 cut(s)	142, 280, 419, 622, 1139
ApeKI	GCWGC	3 cut(s)	60, 446, 695
ApoI	RAATTY	1 cut(s)	412
AspS9I	GGNCC	2 cut(s)	227, 622
AsuC2I	CCSGG	3 cut(s)	141, 242, 279
AsuHPI	GGTGA	4 cut(s)	728, 758, 868, 1046
AvaII	GGWCC	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	279
BalI	TGGCCA	1 cut(s)	1141
BbsI	GAAGAC	1 cut(s)	1116
Bbv12I	GWGCWC	1 cut(s)	779
BbvI	GCAGC	3 cut(s)	72, 433, 682
BccI	CCATC	2 cut(s)	635, 871
BceAI	ACGGC	2 cut(s)	184, 574
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	2 cut(s)	35, 1175
BcnI	CCSGG	3 cut(s)	141, 242, 279
BcoDI	GTCTC	2 cut(s)	18, 822
BisI	GCNGC	5 cut(s)	61, 133, 283, 447, 696
BlsI	GCNGC	5 cut(s)	62, 134, 284, 448, 697
Bme1390I	CCNGG	5 cut(s)	35, 141, 242, 279, 1175
Bme18I	GGWCC	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	227, 622
BmrFI	CCNGG	5 cut(s)	35, 141, 242, 279, 1175
BmsI	GCATC	2 cut(s)	180, 823
BpiI	GAAGAC	1 cut(s)	1116
BpmI	CTGGAG	1 cut(s)	56
BpuEI	CTTGAG	2 cut(s)	793, 804
BpuMI	CCSGG	3 cut(s)	141, 242, 279
BsaI	GGTCTC	1 cut(s)	18
BsaJI	CCNNGG	4 cut(s)	55, 187, 963, 1173
BsaWI	WCCGGW	2 cut(s)	703, 980
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	3 cut(s)	309, 710, 1152
Bse1I	ACTGG	2 cut(s)	14, 625
BseBI	CCWGG	2 cut(s)	35, 1175
BseDI	CCNNGG	4 cut(s)	55, 187, 963, 1173
BseGI	GGATG	8 cut(s)	496, 787, 811, 838, 886, 912, 949, 1169
BseLI	CCNNNNNNNGG	3 cut(s)	309, 710, 1152
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	2 cut(s)	14, 625
BseRI	GAGGAG	4 cut(s)	65, 88, 404, 800
BseSI	GKGCMC	1 cut(s)	279
BseX3I	CGGCCG	2 cut(s)	142, 280
BseXI	GCAGC	3 cut(s)	72, 433, 682
BsgI	GTGCAG	1 cut(s)	934
Bsh1236I	CGCG	1 cut(s)	310
Bsh1285I	CGRYCG	2 cut(s)	145, 283
BshFI	GGCC	5 cut(s)	144, 282, 421, 624, 1141
BsiEI	CGRYCG	2 cut(s)	145, 283
BsiHKAI	GWGCWC	1 cut(s)	779
BsiSI	CCGG	6 cut(s)	141, 242, 279, 332, 704, 981
BslI	CCNNNNNNNGG	3 cut(s)	309, 710, 1152
BsmAI	GTCTC	2 cut(s)	18, 822
BsnI	GGCC	5 cut(s)	144, 282, 421, 624, 1141
Bso31I	GGTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	279, 779
Bsp1407I	TGTACA	1 cut(s)	456
Bsp143I	GATC	6 cut(s)	86, 107, 222, 244, 261, 519
BspACI	CCGC	9 cut(s)	5, 133, 183, 230, 283, 310, 317, 441, 904
BspANI	GGCC	5 cut(s)	144, 282, 421, 624, 1141
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	310
BspHI	TCATGA	1 cut(s)	580
BspPI	GGATC	3 cut(s)	81, 252, 514
BspTNI	GGTCTC	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	14, 625
BssECI	CCNNGG	4 cut(s)	55, 187, 963, 1173
BssMI	GATC	6 cut(s)	86, 107, 222, 244, 261, 519
Bst2UI	CCWGG	2 cut(s)	35, 1175
Bst4CI	ACNGT	3 cut(s)	214, 658, 856
Bst6I	CTCTTC	1 cut(s)	261
BstAUI	TGTACA	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	287, 838
BstDEI	CTNAG	1 cut(s)	320
BstEII	GGTNACC	1 cut(s)	312
BstF5I	GGATG	8 cut(s)	496, 787, 811, 838, 886, 912, 949, 1169
BstFNI	CGCG	1 cut(s)	310
BstKTI	GATC	6 cut(s)	89, 110, 225, 247, 264, 522
BstMAI	GTCTC	2 cut(s)	18, 822
BstMBI	GATC	6 cut(s)	86, 107, 222, 244, 261, 519
BstMCI	CGRYCG	2 cut(s)	145, 283
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 141, 316, 1138
BstNI	CCWGG	2 cut(s)	35, 1175
BstNSI	RCATGY	1 cut(s)	289
BstPI	GGTNACC	1 cut(s)	312
BstSCI	CCNGG	5 cut(s)	33, 139, 240, 277, 1173
BstSLI	GKGCMC	1 cut(s)	279
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	3 cut(s)	72, 433, 682
BstV2I	GAAGAC	1 cut(s)	1116
BstXI	CCANNNNNNTGG	2 cut(s)	530, 1031
BstZI	CGGCCG	2 cut(s)	142, 280
BsuRI	GGCC	5 cut(s)	144, 282, 421, 624, 1141
BtgZI	GCGATG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	8 cut(s)	496, 787, 811, 838, 886, 912, 949, 1169
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	505
Cac8I	GCNNGC	2 cut(s)	287, 838
CciI	TCATGA	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	227, 622
CpoI	CGGWCCG	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	457, 769, 1092
CspI	CGGWCCG	1 cut(s)	227
CviAII	CATG	7 cut(s)	102, 286, 460, 524, 581, 1220, 1259
CviQI	GTAC	3 cut(s)	457, 769, 1092
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	6 cut(s)	88, 109, 224, 246, 263, 521
DpnII	GATC	6 cut(s)	86, 107, 222, 244, 261, 519
DraI	TTTAAA	1 cut(s)	205
EaeI	YGGCCR	3 cut(s)	142, 280, 1139
EagI	CGGCCG	2 cut(s)	142, 280
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	2 cut(s)	20, 172
EclXI	CGGCCG	2 cut(s)	142, 280
Eco147I	AGGCCT	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	227
Eco52I	CGGCCG	2 cut(s)	142, 280
Eco91I	GGTNACC	1 cut(s)	312
EcoO65I	GGTNACC	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	33, 1173
FaeI	CATG	7 cut(s)	105, 289, 463, 527, 584, 1223, 1262
FatI	CATG	7 cut(s)	101, 285, 459, 523, 580, 1219, 1258
Fnu4HI	GCNGC	5 cut(s)	61, 133, 283, 447, 696
FokI	GGATG	8 cut(s)	503, 794, 818, 845, 893, 919, 956, 1156
Fsp4HI	GCNGC	5 cut(s)	61, 133, 283, 447, 696
GluI	GCNGC	5 cut(s)	61, 133, 283, 447, 696
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	5 cut(s)	144, 282, 421, 624, 1141
HapII	CCGG	6 cut(s)	141, 242, 279, 332, 704, 981
Hin1II	CATG	7 cut(s)	105, 289, 463, 527, 584, 1223, 1262
HindIII	AAGCTT	1 cut(s)	913
HinfI	GANTC	6 cut(s)	179, 298, 322, 674, 737, 1121
HpaII	CCGG	6 cut(s)	141, 242, 279, 332, 704, 981
HphI	GGTGA	4 cut(s)	728, 758, 868, 1046
Hpy166II	GTNNAC	2 cut(s)	559, 570
Hpy188I	TCNGA	6 cut(s)	86, 178, 227, 687, 973, 1111
Hpy188III	TCNNGA	7 cut(s)	123, 220, 259, 581, 1061, 1118, 1193
Hpy8I	GTNNAC	2 cut(s)	559, 570
Hpy99I	CGWCG	2 cut(s)	595, 803
HpyAV	CCTTC	4 cut(s)	129, 163, 878, 1037
HpyCH4III	ACNGT	3 cut(s)	214, 658, 856
HpyCH4IV	ACGT	2 cut(s)	273, 1207
HpyCH4V	TGCA	5 cut(s)	289, 826, 840, 951, 1223
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 141, 316, 1138
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	2 cut(s)	273, 1207
Hsp92II	CATG	7 cut(s)	105, 289, 463, 527, 584, 1223, 1262
Kzo9I	GATC	6 cut(s)	86, 107, 222, 244, 261, 519
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	3 cut(s)	72, 433, 682
LweI	GCATC	2 cut(s)	180, 823
MaeII	ACGT	2 cut(s)	273, 1207
MaeIII	GTNAC	2 cut(s)	312, 716
MalI	GATC	6 cut(s)	88, 109, 224, 246, 263, 521
MboI	GATC	6 cut(s)	86, 107, 222, 244, 261, 519
MboII	GAAGA	6 cut(s)	278, 392, 1012, 1049, 1052, 1116
MfeI	CAATTG	1 cut(s)	827
MhlI	GDGCHC	2 cut(s)	279, 779
MlsI	TGGCCA	1 cut(s)	1141
MluCI	AATT	8 cut(s)	412, 451, 536, 543, 576, 827, 994, 1015
MluNI	TGGCCA	1 cut(s)	1141
MlyI	GAGTC	5 cut(s)	173, 331, 668, 746, 1130
MmeI	TCCRAC	2 cut(s)	201, 1289
Mox20I	TGGCCA	1 cut(s)	1141
MscI	TGGCCA	1 cut(s)	1141
MseI	TTAA	5 cut(s)	204, 429, 549, 618, 864
MslI	CAYNNNNRTG	1 cut(s)	1029
Msp20I	TGGCCA	1 cut(s)	1141
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	6 cut(s)	141, 242, 279, 332, 704, 981
MspR9I	CCNGG	5 cut(s)	35, 141, 242, 279, 1175
MunI	CAATTG	1 cut(s)	827
MvaI	CCWGG	2 cut(s)	35, 1175
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	4 cut(s)	60, 141, 316, 1138
NciI	CCSGG	3 cut(s)	141, 242, 279
NdeII	GATC	6 cut(s)	86, 107, 222, 244, 261, 519
NlaIII	CATG	7 cut(s)	105, 289, 463, 527, 584, 1223, 1262
NmeAIII	GCCGAG	2 cut(s)	36, 944
NmuCI	GTSAC	1 cut(s)	716
NspI	RCATGY	1 cut(s)	289
PaeI	GCATGC	1 cut(s)	289
PagI	TCATGA	1 cut(s)	580
PceI	AGGCCT	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	3 cut(s)	174, 270, 683
PfeI	GAWTC	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	5 cut(s)	62, 134, 284, 448, 697
PleI	GAGTC	5 cut(s)	173, 330, 668, 745, 1129
PpsI	GAGTC	5 cut(s)	173, 330, 668, 745, 1129
PsiI	TTATAA	1 cut(s)	873
Psp6I	CCWGG	2 cut(s)	33, 1173
PspEI	GGTNACC	1 cut(s)	312
PspGI	CCWGG	2 cut(s)	33, 1173
PspPI	GGNCC	2 cut(s)	227, 622
RsaI	GTAC	3 cut(s)	458, 770, 1093
RsaNI	GTAC	3 cut(s)	457, 769, 1092
RseI	CAYNNNNRTG	1 cut(s)	1029
Rsr2I	CGGWCCG	1 cut(s)	227
RsrII	CGGWCCG	1 cut(s)	227
SaqAI	TTAA	5 cut(s)	204, 429, 549, 618, 864
SatI	GCNGC	5 cut(s)	61, 133, 283, 447, 696
Sau3AI	GATC	6 cut(s)	86, 107, 222, 244, 261, 519
Sau96I	GGNCC	2 cut(s)	227, 622
SchI	GAGTC	5 cut(s)	173, 331, 668, 746, 1130
ScrFI	CCNGG	5 cut(s)	35, 141, 242, 279, 1175
SduI	GDGCHC	2 cut(s)	279, 779
SfaNI	GCATC	2 cut(s)	180, 823
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	1029
SmlI	CTYRAG	2 cut(s)	772, 819
SmoI	CTYRAG	2 cut(s)	772, 819
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	8 cut(s)	412, 451, 536, 543, 576, 827, 994, 1015
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	9 cut(s)	5, 133, 183, 230, 283, 310, 317, 441, 904
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	5 cut(s)	33, 139, 240, 277, 1173
TaaI	ACNGT	3 cut(s)	214, 658, 856
TaiI	ACGT	2 cut(s)	276, 1210
TaqI	TCGA	7 cut(s)	264, 362, 378, 677, 740, 762, 1163
TasI	AATT	8 cut(s)	412, 451, 536, 543, 576, 827, 994, 1015
TatI	WGTACW	2 cut(s)	456, 768
TauI	GCSGC	2 cut(s)	135, 285
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	5 cut(s)	204, 429, 549, 618, 864
Tru9I	TTAA	5 cut(s)	204, 429, 549, 618, 864
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	3 cut(s)	60, 446, 695
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	7 cut(s)	392, 507, 569, 825, 897, 923, 1149
TspGWI	ACGGA	3 cut(s)	68, 79, 794
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.