AT2G17120

Lysm domain GPI-anchored protein 2 precursor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012394
Physical Location & Seq
Forward (+)
7458930 .. 7460819
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17120.1

Sequence Viewer

Length: 1053 bp
ATGGAAACTTCCTGTTTTACCCTTCTCGGTCTCCTTGTCTCCCTCTCCTTCTTCCTCACTCTCTCCGCCCAAATGACCGGAAACTTCAACTGCAGTGGCTCAACCTCGACGTGTCAATCTCTCGTTGGTTACTCAAGCAAGAACGCAACAACGTTGCGCAATATCCAAACCCTTTTTGCCGTCAAGAACCTCCGCTCGATCCTCGGAGCTAACAATCTCCCACTCAACACCTCACGTGACCAACGCGTGAACCCGAATCAAGTCGTACGTGTCCCAATCCATTGCTCTTGCTCCAATGGAACCGGTGTCTCGAACCGGGACATCGAATACACCATCAAGAAAGACGACATACTCTCTTTCGTCGCAACTGAGATTTTCGGTGGTCTCGTTACGTACGAGAAGATCAGTGAGGTTAACAAAATCCCTGACCCGAACAAAATCGAAATCGGTCAAAAGTTTTGGATCCCTTTGCCTTGTAGCTGTGATAAATTGAACGGTGAGGATGTTGTTCACTACGCACATGTAGTCAAACTAGGGAGCTCTCTCGGTGAGATCGCTGCTCAGTTTGGAACGGACAACACGACGTTGGCTCAGCTCAATGGAATCATTGGTGACTCTCAGCTTCTTGCTGATAAACCTCTCGACGTCCCTCTCAAAGCTTGTAGCTCTTCTGTGAGGAAGGACTCGTTGGATGCTCCTCTGCTTCTGTCTAACAACTCATACGTCTTCACTGCAAACAATTGCGTCAAGTGTACTTGTGACGCTTTGAAGAATTGGACTTTAAGCTGTCAATCATCATCTGAGATTAAGCCTTCGAACTGGCAAACCTGCCCACCATTTTCACAATGTGATGGAGCTTTGCTTAACGCCTCTTGCAGACAACCTCGTGATTGCGTCTATGCTGGTTACTCCAACCAAACCATCTTCACCACAGCTTCCCCAGCTTGTCCAGATTCTGCTGGTCCTGATAACTATGCATCAACGCTCAGCTCAAGCTTCAATTTCGTGATTGTGTTGATTCAGTGTGCTCTGCTTTGTCTCTGCCTTCTCTAG

Protein Analysis

350

Amino Acids

37.74

Weight (kDa)

5.93

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM1_NFP_LYK PF23446 37 - 97 2.6e-08 NFP/LYK LysM1 domain
LysM2_NFP PF23457 107 - 157 3.2e-07 NFP LysM2 domain
LysM2_CERK1_LYK3_4_5 PF23472 108 - 157 8.1e-06 LYK3/4/5 LysM2 domain
LysM PF01476 110 - 156 3.1e-08 LysM domain
LysM PF01476 174 - 217 4.1e-07 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17120
fragaria_vesca FvH4_2g16381
malus_domestica MD00G1083800.v1.1
prunus_persica Prupe.8G176700_v2.0.a1 Prupe.8G176700_v2.0.a1
pyrus_communis pycom05g12980
rosa_chinensis RchiOBHm_Chr6g0280171
rosa_laevigata RLG00000013080
rosa_multiflora Rmu_co8435311.1_g000001 Rmu_sc0007137.1_g000014
rosa_roxburghii Rroxscaffold_7G00188340
rosa_rugosa Rorug06G0130300 Rorug06G0130400
rosa_samantha Rh6AG240700 Rh6AG241500 Rh6BG244400 Rh6CG246000 Rh6DG237100
rosa_wichuraiana Rw6G020970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 648
Acc16I TGCGCA 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 836
AccBSI CCGCTC 1 cut(s) 195
AccII CGCG 1 cut(s) 246
AciI CCGC 2 cut(s) 66, 193
AclI AACGTT 1 cut(s) 152
AclWI GGATC 3 cut(s) 193, 457, 470
AcvI CACGTG 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 645
AdeI CACNNNGTG 1 cut(s) 848
AfaI GTAC 3 cut(s) 267, 395, 754
AflIII ACRYGT 4 cut(s) 110, 244, 268, 520
AgeI ACCGGT 1 cut(s) 302
AgsI TTSAA 4 cut(s) 88, 493, 769, 1000
AjiI CACGTC 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
Alw21I GWGCWC 2 cut(s) 542, 1030
Alw26I GTCTC 5 cut(s) 35, 43, 313, 389, 1043
AlwI GGATC 3 cut(s) 193, 457, 470
AlwNI CAGNNNCTG 1 cut(s) 956
ApeKI GCWGC 1 cut(s) 557
AsiGI ACCGGT 1 cut(s) 302
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 962
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 4 cut(s) 509, 560, 623, 919
AsuII TTCGAA 1 cut(s) 815
AvaII GGWCC 1 cut(s) 962
BamHI GGATCC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 542
BauI CACGAG 1 cut(s) 885
BbrPI CACGTG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 718
Bbv12I GWGCWC 2 cut(s) 542, 1030
BbvI GCAGC 1 cut(s) 544
BccI CCATC 3 cut(s) 341, 845, 929
BceAI ACGGC 1 cut(s) 164
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 5 cut(s) 35, 43, 313, 389, 1043
BfaI CTAG 2 cut(s) 533, 1051
BfmI CTRYAG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 836
BisI GCNGC 1 cut(s) 558
BlpI GCTNAGC 2 cut(s) 591, 986
BlsI GCNGC 1 cut(s) 559
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 962
BmgBI CACGTC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 962
BmiI GGNNCC 2 cut(s) 301, 464
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 2 cut(s) 682, 986
BpiI GAAGAC 1 cut(s) 718
Bpu1102I GCTNAGC 2 cut(s) 591, 986
Bpu14I TTCGAA 1 cut(s) 815
BpuEI CTTGAG 2 cut(s) 118, 976
BpuMI CCSGG 1 cut(s) 317
BsaAI YACGTR 3 cut(s) 236, 269, 393
BsaHI GRCGYC 1 cut(s) 645
BsaI GGTCTC 2 cut(s) 35, 389
BsaJI CCNNGG 1 cut(s) 202
BsaWI WCCGGW 2 cut(s) 77, 302
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 824
Bse3DI GCAATG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 2 cut(s) 508, 697
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 6 cut(s) 360, 575, 605, 632, 792, 1000
BseNI ACTGG 1 cut(s) 824
BseRI GAGGAG 1 cut(s) 687
BseXI GCAGC 1 cut(s) 544
BseYI CCCAGC 1 cut(s) 940
Bsh1236I CGCG 1 cut(s) 246
BshTI ACCGGT 1 cut(s) 302
BsiHKAI GWGCWC 2 cut(s) 542, 1030
BsiSI CCGG 3 cut(s) 78, 303, 316
BsiWI CGTACG 2 cut(s) 265, 393
BslFI GGGAC 3 cut(s) 257, 332, 632
BsmAI GTCTC 5 cut(s) 35, 43, 313, 389, 1043
BsmFI GGGAC 3 cut(s) 257, 332, 632
Bso31I GGTCTC 2 cut(s) 35, 389
Bsp119I TTCGAA 1 cut(s) 815
Bsp1286I GDGCHC 2 cut(s) 542, 1030
Bsp143I GATC 4 cut(s) 198, 402, 462, 552
Bsp1720I GCTNAGC 2 cut(s) 591, 986
BspACI CCGC 2 cut(s) 66, 193
BspCNI CTCAG 6 cut(s) 361, 574, 604, 631, 793, 999
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 301, 464
BspMAI CTGCAG 1 cut(s) 95
BspMI ACCTGC 1 cut(s) 836
BspPI GGATC 3 cut(s) 193, 457, 470
BspQI GCTCTTC 1 cut(s) 673
BspT104I TTCGAA 1 cut(s) 815
BspTNI GGTCTC 2 cut(s) 35, 389
BsrBI CCGCTC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 280
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 1 cut(s) 824
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 4 cut(s) 198, 402, 462, 552
BssNI GRCGYC 1 cut(s) 645
BssSI CACGAG 1 cut(s) 885
Bst2BI CACGAG 1 cut(s) 885
Bst4CI ACNGT 1 cut(s) 497
Bst6I CTCTTC 1 cut(s) 673
BstACI GRCGYC 1 cut(s) 645
BstBAI YACGTR 3 cut(s) 236, 269, 393
BstBI TTCGAA 1 cut(s) 815
BstDEI CTNAG 6 cut(s) 369, 561, 591, 618, 801, 986
BstF5I GGATG 2 cut(s) 508, 697
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 4 cut(s) 201, 405, 465, 555
BstMAI GTCTC 5 cut(s) 35, 43, 313, 389, 1043
BstMBI GATC 4 cut(s) 198, 402, 462, 552
BstMWI GCNNNNNNNGC 1 cut(s) 941
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 315
BstSFI CTRYAG 1 cut(s) 91
BstSNI TACGTA 1 cut(s) 393
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 544
BstV2I GAAGAC 1 cut(s) 718
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 508, 697
BtsI GCAGTG 2 cut(s) 100, 729
BtsIMutI CAGTG 4 cut(s) 100, 412, 729, 1028
BveI ACCTGC 1 cut(s) 836
CaiI CAGNNNCTG 1 cut(s) 956
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 962
CseI GACGC 3 cut(s) 733, 770, 883
Csp6I GTAC 3 cut(s) 266, 394, 753
CspAI ACCGGT 1 cut(s) 302
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 1 cut(s) 521
CviQI GTAC 3 cut(s) 266, 394, 753
DdeI CTNAG 6 cut(s) 369, 561, 591, 618, 801, 986
DpnI GATC 4 cut(s) 200, 404, 464, 554
DpnII GATC 4 cut(s) 198, 402, 462, 552
DraIII CACNNNGTG 1 cut(s) 848
Eam1104I CTCTTC 1 cut(s) 673
EarI CTCTTC 1 cut(s) 673
EciI GGCGGA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 540
Eco105I TACGTA 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 542
Eco31I GGTCTC 2 cut(s) 35, 389
Eco47I GGWCC 1 cut(s) 962
Eco53kI GAGCTC 1 cut(s) 540
Eco72I CACGTG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 540
EcoT22I ATGCAT 1 cut(s) 979
EcoT38I GRGCYC 1 cut(s) 542
FaeI CATG 1 cut(s) 524
FaiI YATR 5 cut(s) 350, 522, 721, 900, 975
FaqI GGGAC 3 cut(s) 257, 332, 632
FatI CATG 1 cut(s) 520
Fnu4HI GCNGC 1 cut(s) 558
FokI GGATG 2 cut(s) 515, 704
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 1 cut(s) 558
FspBI CTAG 2 cut(s) 533, 1051
FspI TGCGCA 1 cut(s) 158
GlaI GCGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 558
GsaI CCCAGC 1 cut(s) 944
HapII CCGG 3 cut(s) 78, 303, 316
HgaI GACGC 3 cut(s) 733, 770, 883
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 645
Hin1II CATG 1 cut(s) 524
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 2 cut(s) 657, 994
HinfI GANTC 6 cut(s) 256, 603, 614, 683, 953, 1018
HpaI GTTAAC 1 cut(s) 415
HpaII CCGG 3 cut(s) 78, 303, 316
HphI GGTGA 4 cut(s) 509, 560, 623, 919
Hpy166II GTNNAC 4 cut(s) 250, 415, 511, 753
Hpy188I TCNGA 2 cut(s) 206, 802
Hpy188III TCNNGA 8 cut(s) 184, 310, 337, 641, 887, 950, 965, 1006
Hpy8I GTNNAC 4 cut(s) 250, 415, 511, 753
Hpy99I CGWCG 4 cut(s) 112, 365, 586, 647
HpyAV CCTTC 4 cut(s) 32, 58, 673, 822
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4IV ACGT 8 cut(s) 110, 152, 235, 268, 392, 584, 645, 723
HpyCH4V TGCA 4 cut(s) 93, 734, 876, 977
HpyF10VI GCNNNNNNNGC 1 cut(s) 941
HpyF3I CTNAG 6 cut(s) 369, 561, 591, 618, 801, 986
HpySE526I ACGT 8 cut(s) 110, 152, 235, 268, 392, 584, 645, 723
Hsp92I GRCGYC 1 cut(s) 645
Hsp92II CATG 1 cut(s) 524
HspAI GCGC 1 cut(s) 157
KspAI GTTAAC 1 cut(s) 415
Kzo9I GATC 4 cut(s) 198, 402, 462, 552
LguI GCTCTTC 1 cut(s) 673
LmnI GCTCC 5 cut(s) 206, 296, 537, 700, 854
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 2 cut(s) 682, 986
MaeI CTAG 2 cut(s) 533, 1051
MaeII ACGT 8 cut(s) 110, 152, 235, 268, 392, 584, 645, 723
MaeIII GTNAC 6 cut(s) 128, 236, 388, 611, 758, 905
MalI GATC 4 cut(s) 200, 404, 464, 554
MbiI CCGCTC 1 cut(s) 195
MboI GATC 4 cut(s) 198, 402, 462, 552
MboII GAAGA 6 cut(s) 43, 412, 660, 718, 781, 916
MfeI CAATTG 1 cut(s) 739
MflI RGATCY 1 cut(s) 462
MhlI GDGCHC 2 cut(s) 542, 1030
MluCI AATT 4 cut(s) 488, 739, 772, 1000
MluI ACGCGT 1 cut(s) 244
MlyI GAGTC 2 cut(s) 608, 677
MmeI TCCRAC 2 cut(s) 669, 936
Mph1103I ATGCAT 1 cut(s) 979
MseI TTAA 4 cut(s) 414, 782, 807, 864
MspI CCGG 3 cut(s) 78, 303, 316
MspR9I CCNGG 1 cut(s) 317
MunI CAATTG 1 cut(s) 739
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 941
NciI CCSGG 1 cut(s) 317
NdeII GATC 4 cut(s) 198, 402, 462, 552
NlaIII CATG 1 cut(s) 524
NlaIV GGNNCC 2 cut(s) 301, 464
NmuCI GTSAC 3 cut(s) 236, 611, 758
NsbI TGCGCA 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 979
NspI RCATGY 1 cut(s) 524
NspV TTCGAA 1 cut(s) 815
PciI ACATGT 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 673
PcsI WCGNNNNNNNCGW 3 cut(s) 384, 393, 578
PfeI GAWTC 4 cut(s) 256, 603, 953, 1018
Pfl23II CGTACG 2 cut(s) 265, 393
PinAI ACCGGT 1 cut(s) 302
PkrI GCNGC 1 cut(s) 559
PleI GAGTC 2 cut(s) 608, 677
PmaCI CACGTG 1 cut(s) 236
PmlI CACGTG 1 cut(s) 236
PpsI GAGTC 2 cut(s) 608, 677
Ppu21I YACGTR 3 cut(s) 236, 269, 393
PscI ACATGT 1 cut(s) 520
Psp124BI GAGCTC 1 cut(s) 542
Psp1406I AACGTT 1 cut(s) 152
PspCI CACGTG 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 940
PspLI CGTACG 2 cut(s) 265, 393
PspN4I GGNNCC 2 cut(s) 301, 464
PspPI GGNCC 1 cut(s) 962
PstI CTGCAG 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 956
PsuI RGATCY 1 cut(s) 462
RsaI GTAC 3 cut(s) 267, 395, 754
RsaNI GTAC 3 cut(s) 266, 394, 753
SacI GAGCTC 1 cut(s) 542
SapI GCTCTTC 1 cut(s) 673
SaqAI TTAA 4 cut(s) 414, 782, 807, 864
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 4 cut(s) 198, 402, 462, 552
Sau96I GGNCC 1 cut(s) 962
SchI GAGTC 2 cut(s) 608, 677
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 2 cut(s) 542, 1030
SfaNI GCATC 2 cut(s) 682, 986
SfcI CTRYAG 1 cut(s) 91
SfuI TTCGAA 1 cut(s) 815
SinI GGWCC 1 cut(s) 962
SmlI CTYRAG 2 cut(s) 133, 991
SmoI CTYRAG 2 cut(s) 133, 991
SnaBI TACGTA 1 cut(s) 393
Sse9I AATT 4 cut(s) 488, 739, 772, 1000
SsiI CCGC 2 cut(s) 66, 193
SspMI CTAG 2 cut(s) 533, 1051
SstI GAGCTC 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 497
TaiI ACGT 8 cut(s) 113, 155, 238, 271, 395, 587, 648, 726
TaqI TCGA 7 cut(s) 107, 197, 311, 324, 441, 642, 815
TaqII GACCGA 2 cut(s) 17, 437
TasI AATT 4 cut(s) 488, 739, 772, 1000
TatI WGTACW 1 cut(s) 752
TfiI GAWTC 4 cut(s) 256, 603, 953, 1018
Tru1I TTAA 4 cut(s) 414, 782, 807, 864
Tru9I TTAA 4 cut(s) 414, 782, 807, 864
TscAI CASTG 4 cut(s) 100, 412, 736, 1028
TseFI GTSAC 3 cut(s) 236, 611, 758
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 3 cut(s) 236, 611, 758
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 4 cut(s) 100, 412, 736, 1028
VpaK11BI GGWCC 1 cut(s) 962
XceI RCATGY 1 cut(s) 524
XspI CTAG 2 cut(s) 533, 1051
ZraI GACGTC 1 cut(s) 646
Zsp2I ATGCAT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.