Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012394

Physical Location & Seq

Genomic Coordinates Forward (+)

16524583 .. 16528562

Gene Structure 3980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g12980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCTCTCTCCGCCCTCACACTCGCACTTCTCCTCACCCTCTCCCTCCTCTCATTTCTCCCCACACCTACCTACTCCGCCACCTTCAACTGCTCTGCCCCCGCCTCCACCACCTGCCGCTCCCTCATCGCCTACATCCCCCCTAACTCCACCACCCTCAACTCCATCAAAACCCTCTTCAATGTCACCCACTTCCGCACCCTGCTCGGCGCCAACAACTTCCCCATCGCCACCGACCCGGCCTTACCCGTCGCCACCGGACAAAAGGTCCTCATCCCCTTCACCTGCCTCTGCCGCAACGGCACTGGCATCTCCAACAAGCGGCCCCAGTACATAGTCAAGTCCGGCGACAACCTCGACCACATAGCCACCGTCCTGTTCTCGAGGCTTGTGACGTACCAGGAAATCGCGGCGGTGAATAAGATATCCGACCCCAGTCTGATACGGATCGGGCAGAAGCTGTGGATTCCGCTGCCTTGTAGTTGCGATGAAGTGGACGGTGAGAGGGTGGTCCATTACGGACACGTGGTGGCGGCTGGGAGCTCGGTGGAGGCGATTGCGACGGAGTACGGGACGACCCAGGAGACTCTGCTGAGGATCAATGGGATATCGGATCCGAAGACCCTTCAGGCCAATCAAGTCCTCGATGTTCCTCTCAAAGCTTGTTCGTCTTCCGTATCCAATGAATCATCTGACGCCCCTTTACTGGTTTCTAAAAACACCTACGTCTTTACTGCCAACGATTGCGTGAAGTGCCAATGCAGTTCTGCAAACAATTGGACCTTACAATGCGAGCCATCCACCTTTAACTTAACTGTATGCCCTGCGATGCAATGCGAGGATTCAAGTCTGACTAGTAAGCTATTACTTGGCAACAGCACATCCGGTTGCAATCAAACAACCTGTGCCTATGCTGGTTATACTAACCAGACCAAGATTCTTACAACCTTGGTAACACACTCCACTTGTTCAGACAATAACAATAACGCTTCAAAGATGAGTTTGCAAGGCTCGAGTTGGAACTTCCTTTTCGTGGCAATTCACTTGGTGCTTCTCTTTCTTCATGTTCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008061 GO:0008144 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

359

Amino Acids

38.5

Weight (kDa)

6.99

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17120
fragaria_vesca	FvH4_2g16381
malus_domestica	MD00G1083800.v1.1
prunus_persica	Prupe.8G176700_v2.0.a1 Prupe.8G176700_v2.0.a1
pyrus_communis	pycom05g12980
rosa_chinensis	RchiOBHm_Chr6g0280171
rosa_laevigata	RLG00000013080
rosa_multiflora	Rmu_co8435311.1_g000001 Rmu_sc0007137.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188340
rosa_rugosa	Rorug06G0130300 Rorug06G0130400
rosa_samantha	Rh6AG240700 Rh6AG241500 Rh6BG244400 Rh6CG246000 Rh6DG237100
rosa_wichuraiana	Rw6G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	122, 293
Acc36I	ACCTGC	2 cut(s)	122, 293
AccB1I	GGYRCC	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	120
AccII	CGCG	1 cut(s)	410
AclWI	GGATC	4 cut(s)	455, 605, 608, 621
AcuI	CTGAAG	1 cut(s)	611
AcvI	CACGTG	1 cut(s)	526
AcyI	GRCGYC	2 cut(s)	210, 696
AdeI	CACNNNGTG	2 cut(s)	529, 1048
AfaI	GTAC	3 cut(s)	332, 398, 569
AfiI	CCNNNNNNNGG	3 cut(s)	321, 706, 1033
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	5 cut(s)	88, 181, 846, 993, 1073
AhdI	GACNNNNNGTC	1 cut(s)	266
AhlI	ACTAGT	1 cut(s)	854
AjnI	CCWGG	2 cut(s)	399, 579
AluBI	AGCT	4 cut(s)	460, 543, 662, 862
AluI	AGCT	4 cut(s)	460, 543, 662, 862
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	2 cut(s)	9, 578
AlwI	GGATC	4 cut(s)	455, 605, 608, 621
AlwNI	CAGNNNCTG	1 cut(s)	460
Ama87I	CYCGRG	2 cut(s)	382, 1012
AoxI	GGCC	3 cut(s)	240, 323, 630
ApeKI	GCWGC	1 cut(s)	472
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	4 cut(s)	268, 324, 511, 780
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	5 cut(s)	28, 178, 274, 427, 512
AvaI	CYCGRG	2 cut(s)	382, 1012
AvaII	GGWCC	3 cut(s)	268, 511, 780
BamHI	GGATCC	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	545
BbrPI	CACGTG	1 cut(s)	526
BbsI	GAAGAC	2 cut(s)	626, 663
Bbv12I	GWGCWC	1 cut(s)	545
BbvCI	CCTCAGC	1 cut(s)	593
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	3 cut(s)	173, 233, 805
BceAI	ACGGC	1 cut(s)	316
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	2 cut(s)	401, 581
BciVI	GTATCC	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	9, 578
BcuI	ACTAGT	1 cut(s)	854
BfaI	CTAG	1 cut(s)	855
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	2 cut(s)	122, 293
BfuI	GTATCC	1 cut(s)	688
BglI	GCCNNNNNGGC	1 cut(s)	300
BisI	GCNGC	6 cut(s)	118, 295, 323, 411, 473, 534
BlsI	GCNGC	6 cut(s)	119, 296, 324, 412, 474, 535
Bme1390I	CCNGG	3 cut(s)	239, 401, 581
Bme18I	GGWCC	3 cut(s)	268, 511, 780
BmeRI	GACNNNNNGTC	1 cut(s)	266
BmeT110I	CYCGRG	2 cut(s)	382, 1012
BmgT120I	GGNCC	4 cut(s)	268, 324, 511, 780
BmiI	GGNNCC	3 cut(s)	211, 326, 615
BmrFI	CCNGG	3 cut(s)	239, 401, 581
BmrI	ACTGGG	2 cut(s)	322, 429
BmsI	GCATC	2 cut(s)	318, 819
BmuI	ACTGGG	2 cut(s)	322, 429
BoxI	GACNNNNGTC	1 cut(s)	435
BpiI	GAAGAC	2 cut(s)	626, 663
Bpu10I	CCTNAGC	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	239
BsaAI	YACGTR	1 cut(s)	526
BsaBI	GATNNNNATC	1 cut(s)	446
BsaHI	GRCGYC	2 cut(s)	210, 696
BsaJI	CCNNGG	2 cut(s)	579, 948
BsaWI	WCCGGW	2 cut(s)	257, 884
Bsc4I	CCNNNNNNNGG	3 cut(s)	321, 706, 1033
Bse1I	ACTGG	4 cut(s)	310, 328, 435, 711
Bse3DI	GCAATG	1 cut(s)	839
Bse8I	GATNNNNATC	1 cut(s)	446
BseBI	CCWGG	2 cut(s)	401, 581
BseDI	CCNNGG	2 cut(s)	579, 948
BseGI	GGATG	4 cut(s)	135, 273, 797, 881
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	3 cut(s)	321, 706, 1033
BseMI	GCAATG	1 cut(s)	839
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	4 cut(s)	310, 328, 435, 711
BseRI	GAGGAG	2 cut(s)	23, 38
BseXI	GCAGC	1 cut(s)	459
BseYI	CCCAGC	1 cut(s)	536
Bsh1236I	CGCG	1 cut(s)	410
BshFI	GGCC	3 cut(s)	242, 325, 632
BshNI	GGYRCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	545
BsiHKCI	CYCGRG	2 cut(s)	382, 1012
BsiSI	CCGG	4 cut(s)	239, 258, 345, 885
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	3 cut(s)	321, 706, 1033
BsmAI	GTCTC	2 cut(s)	9, 578
BsmFI	GGGAC	1 cut(s)	586
BsnI	GGCC	3 cut(s)	242, 325, 632
BsoBI	CYCGRG	2 cut(s)	382, 1012
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	447, 597, 613
BspANI	GGCC	3 cut(s)	242, 325, 632
BspCNI	CTCAG	1 cut(s)	585
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	3 cut(s)	211, 326, 615
BspMI	ACCTGC	2 cut(s)	122, 293
BspPI	GGATC	4 cut(s)	455, 605, 608, 621
BspT107I	GGYRCC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	839
BsrI	ACTGG	4 cut(s)	310, 328, 435, 711
BssECI	CCNNGG	2 cut(s)	579, 948
BssMI	GATC	3 cut(s)	447, 597, 613
BssNI	GRCGYC	2 cut(s)	210, 696
BssT1I	CCWWGG	1 cut(s)	948
Bst2UI	CCWGG	2 cut(s)	401, 581
Bst4CI	ACNGT	3 cut(s)	373, 500, 817
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	2 cut(s)	210, 696
BstBAI	YACGTR	1 cut(s)	526
BstC8I	GCNNGC	1 cut(s)	794
BstDEI	CTNAG	1 cut(s)	593
BstF5I	GGATG	4 cut(s)	135, 273, 797, 881
BstFNI	CGCG	1 cut(s)	410
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	3 cut(s)	450, 600, 616
BstMAI	GTCTC	2 cut(s)	9, 578
BstMBI	GATC	3 cut(s)	447, 597, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	294, 300, 753
BstNI	CCWGG	2 cut(s)	401, 581
BstPAI	GACNNNNGTC	1 cut(s)	435
BstSCI	CCNGG	3 cut(s)	237, 399, 579
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	1 cut(s)	459
BstV2I	GAAGAC	2 cut(s)	626, 663
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	242, 325, 632
BtgZI	GCGATG	4 cut(s)	112, 211, 501, 842
BtsCI	GGATG	4 cut(s)	135, 273, 797, 881
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	2 cut(s)	122, 293
Cac8I	GCNNGC	1 cut(s)	794
CaiI	CAGNNNCTG	1 cut(s)	460
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	4 cut(s)	268, 324, 511, 780
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	3 cut(s)	331, 397, 568
CviAII	CATG	1 cut(s)	1064
CviQI	GTAC	3 cut(s)	331, 397, 568
DdeI	CTNAG	1 cut(s)	593
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	3 cut(s)	449, 599, 615
DpnII	GATC	3 cut(s)	447, 597, 613
DraIII	CACNNNGTG	2 cut(s)	529, 1048
DriI	GACNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	182
Eam1105I	GACNNNNNGTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	948
Eco24I	GRGCYC	1 cut(s)	545
Eco32I	GATATC	2 cut(s)	426, 609
Eco47I	GGWCC	3 cut(s)	268, 511, 780
Eco53kI	GAGCTC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	611
Eco72I	CACGTG	1 cut(s)	526
Eco88I	CYCGRG	2 cut(s)	382, 1012
EcoICRI	GAGCTC	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	399, 579
EcoRV	GATATC	2 cut(s)	426, 609
EcoT14I	CCWWGG	1 cut(s)	948
EcoT38I	GRGCYC	1 cut(s)	545
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	948
FaeI	CATG	1 cut(s)	1067
FaiI	YATR	6 cut(s)	335, 365, 820, 912, 921, 1065
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	1 cut(s)	1063
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	6 cut(s)	118, 295, 323, 411, 473, 534
FokI	GGATG	4 cut(s)	122, 260, 784, 868
FriOI	GRGCYC	1 cut(s)	545
Fsp4HI	GCNGC	6 cut(s)	118, 295, 323, 411, 473, 534
FspBI	CTAG	1 cut(s)	855
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	6 cut(s)	118, 295, 323, 411, 473, 534
GsaI	CCCAGC	1 cut(s)	540
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	242, 325, 632
HapII	CCGG	4 cut(s)	239, 258, 345, 885
HgaI	GACGC	1 cut(s)	704
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	2 cut(s)	210, 696
Hin1II	CATG	1 cut(s)	1067
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	5 cut(s)	466, 586, 686, 842, 937
HpaII	CCGG	4 cut(s)	239, 258, 345, 885
HphI	GGTGA	5 cut(s)	28, 178, 274, 427, 512
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	7 cut(s)	430, 441, 613, 618, 694, 852, 973
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	2 cut(s)	254, 565
HpyAV	CCTTC	3 cut(s)	94, 289, 635
HpyCH4III	ACNGT	3 cut(s)	373, 500, 817
HpyCH4IV	ACGT	3 cut(s)	395, 525, 726
HpyCH4V	TGCA	5 cut(s)	762, 770, 832, 891, 1006
HpyF10VI	GCNNNNNNNGC	3 cut(s)	294, 300, 753
HpyF3I	CTNAG	1 cut(s)	593
HpySE526I	ACGT	3 cut(s)	395, 525, 726
Hsp92I	GRCGYC	2 cut(s)	210, 696
Hsp92II	CATG	1 cut(s)	1067
HspAI	GCGC	1 cut(s)	210
KasI	GGCGCC	1 cut(s)	209
Kzo9I	GATC	3 cut(s)	447, 597, 613
LmnI	GCTCC	2 cut(s)	125, 540
Lsp1109I	GCAGC	1 cut(s)	459
LweI	GCATC	2 cut(s)	318, 819
MaeI	CTAG	1 cut(s)	855
MaeII	ACGT	3 cut(s)	395, 525, 726
MaeIII	GTNAC	3 cut(s)	184, 391, 952
MalI	GATC	3 cut(s)	449, 599, 615
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	3 cut(s)	447, 597, 613
MboII	GAAGA	5 cut(s)	169, 631, 663, 1052, 1061
MfeI	CAATTG	1 cut(s)	775
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	2 cut(s)	775, 1038
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	580
MmeI	TCCRAC	3 cut(s)	339, 453, 998
MseI	TTAA	2 cut(s)	807, 812
MspA1I	CMGCKG	1 cut(s)	472
MspI	CCGG	4 cut(s)	239, 258, 345, 885
MspR9I	CCNGG	3 cut(s)	239, 401, 581
MunI	CAATTG	1 cut(s)	775
MvaI	CCWGG	2 cut(s)	401, 581
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	3 cut(s)	294, 300, 753
NarI	GGCGCC	1 cut(s)	210
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	3 cut(s)	447, 597, 613
NlaIII	CATG	1 cut(s)	1067
NlaIV	GGNNCC	3 cut(s)	211, 326, 615
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	184, 391
PaeR7I	CTCGAG	2 cut(s)	382, 1012
PaqCI	CACCTGC	2 cut(s)	122, 293
PcsI	WCGNNNNNNNCGW	1 cut(s)	551
PfeI	GAWTC	4 cut(s)	466, 686, 842, 937
PkrI	GCNGC	6 cut(s)	119, 296, 324, 412, 474, 535
PleI	GAGTC	1 cut(s)	580
PluTI	GGCGCC	1 cut(s)	213
PmaCI	CACGTG	1 cut(s)	526
PmlI	CACGTG	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	580
Ppu21I	YACGTR	1 cut(s)	526
PpuMI	RGGWCCY	1 cut(s)	268
PshAI	GACNNNNGTC	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	399, 579
PspCI	CACGTG	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	536
PspGI	CCWGG	2 cut(s)	399, 579
PspN4I	GGNNCC	3 cut(s)	211, 326, 615
PspPI	GGNCC	4 cut(s)	268, 324, 511, 780
PspPPI	RGGWCCY	1 cut(s)	268
PspXI	VCTCGAGB	1 cut(s)	1012
PstNI	CAGNNNCTG	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	3 cut(s)	332, 398, 569
RsaNI	GTAC	3 cut(s)	331, 397, 568
SacI	GAGCTC	1 cut(s)	545
SaqAI	TTAA	2 cut(s)	807, 812
SatI	GCNGC	6 cut(s)	118, 295, 323, 411, 473, 534
Sau3AI	GATC	3 cut(s)	447, 597, 613
Sau96I	GGNCC	4 cut(s)	268, 324, 511, 780
SchI	GAGTC	1 cut(s)	580
ScrFI	CCNGG	3 cut(s)	239, 401, 581
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	2 cut(s)	318, 819
SfoI	GGCGCC	1 cut(s)	211
Sfr274I	CTCGAG	2 cut(s)	382, 1012
SinI	GGWCC	3 cut(s)	268, 511, 780
SlaI	CTCGAG	2 cut(s)	382, 1012
SmlI	CTYRAG	2 cut(s)	382, 1012
SmoI	CTYRAG	2 cut(s)	382, 1012
SpeI	ACTAGT	1 cut(s)	854
Sse9I	AATT	2 cut(s)	775, 1038
SspDI	GGCGCC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	855
SstI	GAGCTC	1 cut(s)	545
StyD4I	CCNGG	3 cut(s)	237, 399, 579
StyI	CCWWGG	1 cut(s)	948
TaaI	ACNGT	3 cut(s)	373, 500, 817
TaiI	ACGT	3 cut(s)	398, 528, 729
TaqI	TCGA	4 cut(s)	357, 383, 645, 1013
TasI	AATT	2 cut(s)	775, 1038
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	5 cut(s)	120, 297, 325, 413, 536
TfiI	GAWTC	4 cut(s)	466, 686, 842, 937
Tru1I	TTAA	2 cut(s)	807, 812
Tru9I	TTAA	2 cut(s)	807, 812
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	184, 391
TseI	GCWGC	1 cut(s)	472
Tsp45I	GTSAC	2 cut(s)	184, 391
TspDTI	ATGAA	3 cut(s)	504, 699, 1052
TspGWI	ACGGA	4 cut(s)	460, 534, 578, 664
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	3 cut(s)	268, 511, 780
XhoI	CTCGAG	2 cut(s)	382, 1012
XspI	CTAG	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.