Rorug06G0130300

Glycerol-3-phosphate acyltransferase 3-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
18195309 .. 18199726
4418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0130300.1

Sequence Viewer

Length: 1422 bp
ATGCGATCCAACATGATCATTTACGTTAGAGTCTGGCTGTGGCATGCTTTTATTCTACTGCTGCTTACTTCCAACTTTGCTCTTGCACAGTCGATCATCAAGAACTTACCAGCCTTCCAGGGTGTCCTCCCTTTCAAGCTTAAAACTGGGTATGTGGGCGTGGGAGATTCAGAAGAGGTGCAACTGTTCTACTACTTTGTTGAGTCAGAAAGGAGTCCAGAAAATGATCCTCTGCTGATTTGGTTGACAGGAGGTCCTCGATGCTCTTCGTTTTATGGCCTCATCTACGAAATTGGTCCATTATCTTTCAAACTTACAAATTTGACTACAGATCCCTTAACACTTGTTCTGAATCCAAACTCGTGGAACAAGGTAGCAAACATCATATTCTTAGATGCTCCTGCTGGTACTGGTTACTCCTACTCCACCACTTCCCACGGGTTAATCTCTAGTGACACCTTACATTCAACCCGTATTTGTGAGTTTCTCCAGAAGTGGCTTACGACTCATCAAAAGTTCCTTGCAAATCCACTCTATGTTGCTGGTGACTCTTACTCTGGCAAAATCGTTCCCATCATTGCCCAGAAGATAGCTGATGGTATTGAAGCTGGAATCAAGCCACATTTGAATCTCAAAGGATACATAGTTGGCAATCCAGTTTCAAATGGACAACAGGACGTTAATTCCAGAATTGTATACGCTCATCAGCTGGGACTTATATCAGATAGAATATATCAGTCAGCTAACAGGAATTGCAAGGGCGAATTTGTAGATTTTGATCCAAACAATCAACTGTGCCTGAACAGCCTTCAAGCAATCGATGAGTGCATTGGGAGAATTGATAAAGAACATATCTTGGCACCATTTTGCCTTGCATCAGTTAACCATAACCAAAATTCCATACTGGAAATGAACTGGGAGTCTAATGATGACAGTTTCTTGGACTTTTCATTTCCTATGGTACAAATGTGTAGGGAAGATAAGATTCGGTATTCCGTTCTATGGCAAAATGATATAAATGTTCGCAAAGCTCTTAGTATTCGGGAGGGAACAAAAGCGCAATGGACTAAATGCAATAAAACCACTCCCTATACATTTGACATCGCAAGTAATATTGAGTATCATCGCAATCTCAGCCGAAAAAACCTTCGTGCTATAATCTACAGCGGTGATCATGACATGAGTGTTCCATATATAAGTACACTAGCATGGATAGAATCCATGAACTTTACAATTGAAGAGGATTGGAGACCATGGTTCTCTAATGATCAAGTTGCAGGATACACTCTTTACTATTCGAATAATAAAGAGTATAATTTGACCTATGCGACAATAAAGGGAGGAGGACATACAGCTCCAGAATACAATCCCAAGGAATGTTTTGATATGATCAGTAGGTGGCTAGCGCATACGCCTTTGTAA

Protein Analysis

473

Amino Acids

53.86

Weight (kDa)

6.07

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 37 - 469 9.5e-122 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 859
AccI GTMKAC 1 cut(s) 696
AciI CCGC 1 cut(s) 1167
AclWI GGATC 3 cut(s) 221, 326, 773
AcsI RAATTY 3 cut(s) 319, 764, 895
AfaI GTAC 3 cut(s) 409, 963, 1201
AfiI CCNNNNNNNGG 1 cut(s) 1002
AgsI TTSAA 8 cut(s) 136, 310, 468, 605, 628, 663, 812, 1238
AhdI GACNNNNNGTC 1 cut(s) 252
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 7 cut(s) 139, 593, 608, 709, 743, 1031, 1355
AluI AGCT 7 cut(s) 139, 593, 608, 709, 743, 1031, 1355
Alw26I GTCTC 1 cut(s) 1243
AlwI GGATC 3 cut(s) 221, 326, 773
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 3 cut(s) 319, 764, 895
AspLEI GCGC 2 cut(s) 1060, 1408
AspS9I GGNCC 2 cut(s) 254, 296
AsuHPI GGTGA 2 cut(s) 557, 1181
AsuII TTCGAA 1 cut(s) 1298
AsuNHI GCTAGC 1 cut(s) 1402
AvaII GGWCC 2 cut(s) 254, 296
BaeI ACNNNNGTAYC 2 cut(s) 953, 986
BanI GGYRCC 1 cut(s) 859
BauI CACGAG 1 cut(s) 361
BbvI GCAGC 1 cut(s) 48
BccI CCATC 2 cut(s) 581, 590
BciT130I CCWGG 1 cut(s) 119
BciVI GTATCC 2 cut(s) 632, 1274
BclI TGATCA 4 cut(s) 15, 1171, 1267, 1389
BcoDI GTCTC 1 cut(s) 1243
BfaI CTAG 3 cut(s) 450, 1205, 1403
BfmI CTRYAG 2 cut(s) 327, 1162
BfuI GTATCC 2 cut(s) 632, 1274
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 2 cut(s) 254, 296
BmeRI GACNNNNNGTC 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 254, 296
BmiI GGNNCC 1 cut(s) 861
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 2 cut(s) 156, 925
BmsI GCATC 3 cut(s) 251, 385, 884
BmtI GCTAGC 1 cut(s) 1406
BmuI ACTGGG 2 cut(s) 156, 925
BpmI CTGGAG 2 cut(s) 473, 1341
Bpu14I TTCGAA 1 cut(s) 1298
Bsa29I ATCGAT 1 cut(s) 819
BsaBI GATNNNNATC 1 cut(s) 777
BsaI GGTCTC 1 cut(s) 1243
BsaJI CCNNGG 4 cut(s) 118, 436, 1253, 1371
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 1002
Bse1I ACTGG 5 cut(s) 151, 415, 656, 909, 920
Bse3DI GCAATG 2 cut(s) 576, 1067
Bse8I GATNNNNATC 1 cut(s) 777
BseBI CCWGG 1 cut(s) 119
BseCI ATCGAT 1 cut(s) 819
BseDI CCNNGG 4 cut(s) 118, 436, 1253, 1371
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 1 cut(s) 1002
BseMI GCAATG 2 cut(s) 576, 1067
BseMII CTCAG 1 cut(s) 1147
BseNI ACTGG 5 cut(s) 151, 415, 656, 909, 920
BseRI GAGGAG 1 cut(s) 1356
BseXI GCAGC 1 cut(s) 48
BseYI CCCAGC 1 cut(s) 709
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 859
BshVI ATCGAT 1 cut(s) 819
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 1 cut(s) 1002
BsmAI GTCTC 1 cut(s) 1243
BsmFI GGGAC 1 cut(s) 726
BsnI GGCC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 1243
Bsp119I TTCGAA 1 cut(s) 1298
Bsp143I GATC 9 cut(s) 5, 15, 93, 226, 331, 778, 1171, 1267, 1389
Bsp19I CCATGG 1 cut(s) 1253
BspACI CCGC 1 cut(s) 1167
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 1146
BspDI ATCGAT 1 cut(s) 819
BspHI TCATGA 1 cut(s) 1174
BspLI GGNNCC 1 cut(s) 861
BspOI GCTAGC 1 cut(s) 1406
BspPI GGATC 3 cut(s) 221, 326, 773
BspQI GCTCTTC 1 cut(s) 271
BspT104I TTCGAA 1 cut(s) 1298
BspT107I GGYRCC 1 cut(s) 859
BspTNI GGTCTC 1 cut(s) 1243
BsrDI GCAATG 2 cut(s) 576, 1067
BsrI ACTGG 5 cut(s) 151, 415, 656, 909, 920
BssECI CCNNGG 4 cut(s) 118, 436, 1253, 1371
BssMI GATC 9 cut(s) 5, 15, 93, 226, 331, 778, 1171, 1267, 1389
BssNAI GTATAC 1 cut(s) 697
BssSI CACGAG 1 cut(s) 361
BssT1I CCWWGG 2 cut(s) 1253, 1371
Bst1107I GTATAC 1 cut(s) 697
Bst2BI CACGAG 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 4 cut(s) 90, 186, 795, 935
Bst6I CTCTTC 3 cut(s) 168, 271, 1233
BstBI TTCGAA 1 cut(s) 1298
BstC8I GCNNGC 2 cut(s) 45, 1404
BstDEI CTNAG 3 cut(s) 391, 1034, 1133
BstDSI CCRYGG 2 cut(s) 436, 1253
BstHHI GCGC 2 cut(s) 1060, 1408
BstKTI GATC 9 cut(s) 8, 18, 96, 229, 334, 781, 1174, 1270, 1392
BstMAI GTCTC 1 cut(s) 1243
BstMBI GATC 9 cut(s) 5, 15, 93, 226, 331, 778, 1171, 1267, 1389
BstMWI GCNNNNNNNGC 2 cut(s) 804, 1134
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 2 cut(s) 327, 1162
BstV1I GCAGC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 331
BstXI CCANNNNNNTGG 1 cut(s) 363
BstYI RGATCY 1 cut(s) 331
BstZ17I GTATAC 1 cut(s) 697
Bsu15I ATCGAT 1 cut(s) 819
BsuI GTATCC 2 cut(s) 632, 1274
BsuRI GGCC 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 819
BtgI CCRYGG 2 cut(s) 436, 1253
BtgZI GCGATG 2 cut(s) 1087, 1109
Cac8I GCNNGC 2 cut(s) 45, 1404
CciI TCATGA 1 cut(s) 1174
CfoI GCGC 2 cut(s) 1060, 1408
Cfr13I GGNCC 2 cut(s) 254, 296
ClaI ATCGAT 1 cut(s) 819
Csp6I GTAC 3 cut(s) 408, 962, 1200
CviAII CATG 7 cut(s) 13, 44, 1175, 1180, 1209, 1222, 1254
CviQI GTAC 3 cut(s) 408, 962, 1200
DdeI CTNAG 3 cut(s) 391, 1034, 1133
DpnI GATC 9 cut(s) 7, 17, 95, 228, 333, 780, 1173, 1269, 1391
DpnII GATC 9 cut(s) 5, 15, 93, 226, 331, 778, 1171, 1267, 1389
DriI GACNNNNNGTC 1 cut(s) 252
Eam1104I CTCTTC 3 cut(s) 168, 271, 1233
Eam1105I GACNNNNNGTC 1 cut(s) 252
EarI CTCTTC 3 cut(s) 168, 271, 1233
Eco130I CCWWGG 2 cut(s) 1253, 1371
Eco31I GGTCTC 1 cut(s) 1243
Eco47I GGWCC 2 cut(s) 254, 296
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 1253, 1371
ErhI CCWWGG 2 cut(s) 1253, 1371
FaeI CATG 7 cut(s) 16, 47, 1178, 1183, 1212, 1225, 1257
FaqI GGGAC 1 cut(s) 726
FatI CATG 7 cut(s) 12, 43, 1174, 1179, 1208, 1221, 1253
FbaI TGATCA 4 cut(s) 15, 1171, 1267, 1389
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 3 cut(s) 450, 1205, 1403
GlaI GCGC 2 cut(s) 1059, 1407
GluI GCNGC 1 cut(s) 62
GsaI CCCAGC 1 cut(s) 713
GsuI CTGGAG 2 cut(s) 473, 1341
HaeIII GGCC 1 cut(s) 279
HhaI GCGC 2 cut(s) 1060, 1408
Hin1II CATG 7 cut(s) 16, 47, 1178, 1183, 1212, 1225, 1257
Hin6I GCGC 2 cut(s) 1058, 1406
HinP1I GCGC 2 cut(s) 1058, 1406
HincII GTYRAC 2 cut(s) 246, 883
HindII GTYRAC 2 cut(s) 246, 883
HindIII AAGCTT 1 cut(s) 137
HpaI GTTAAC 1 cut(s) 883
HphI GGTGA 2 cut(s) 557, 1181
Hpy166II GTNNAC 4 cut(s) 246, 697, 883, 1202
Hpy188I TCNGA 4 cut(s) 172, 208, 351, 724
Hpy188III TCNNGA 7 cut(s) 100, 218, 490, 687, 1043, 1175, 1358
Hpy8I GTNNAC 4 cut(s) 246, 697, 883, 1202
HpyAV CCTTC 3 cut(s) 124, 818, 1157
HpyCH4III ACNGT 4 cut(s) 90, 186, 795, 935
HpyCH4IV ACGT 2 cut(s) 24, 678
HpyCH4V TGCA 8 cut(s) 86, 181, 524, 756, 828, 875, 1074, 1277
HpyF10VI GCNNNNNNNGC 2 cut(s) 804, 1134
HpyF3I CTNAG 3 cut(s) 391, 1034, 1133
HpySE526I ACGT 2 cut(s) 24, 678
Hsp92II CATG 7 cut(s) 16, 47, 1178, 1183, 1212, 1225, 1257
HspAI GCGC 2 cut(s) 1058, 1406
Ksp22I TGATCA 4 cut(s) 15, 1171, 1267, 1389
KspAI GTTAAC 1 cut(s) 883
Kzo9I GATC 9 cut(s) 5, 15, 93, 226, 331, 778, 1171, 1267, 1389
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 2 cut(s) 403, 1360
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 3 cut(s) 251, 385, 884
MaeI CTAG 3 cut(s) 450, 1205, 1403
MaeII ACGT 2 cut(s) 24, 678
MaeIII GTNAC 3 cut(s) 413, 452, 545
MalI GATC 9 cut(s) 7, 17, 95, 228, 333, 780, 1173, 1269, 1391
MboI GATC 9 cut(s) 5, 15, 93, 226, 331, 778, 1171, 1267, 1389
MboII GAAGA 5 cut(s) 185, 258, 598, 989, 1250
MfeI CAATTG 1 cut(s) 1233
MflI RGATCY 1 cut(s) 331
MlyI GAGTC 6 cut(s) 39, 212, 223, 499, 542, 929
MmeI TCCRAC 2 cut(s) 33, 96
MseI TTAA 5 cut(s) 141, 338, 443, 681, 882
MslI CAYNNNNRTG 1 cut(s) 1207
MspA1I CMGCKG 2 cut(s) 709, 1167
MspR9I CCNGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 1233
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 804, 1134
NcoI CCATGG 1 cut(s) 1253
NdeII GATC 9 cut(s) 5, 15, 93, 226, 331, 778, 1171, 1267, 1389
NheI GCTAGC 1 cut(s) 1402
NlaIII CATG 7 cut(s) 16, 47, 1178, 1183, 1212, 1225, 1257
NlaIV GGNNCC 1 cut(s) 861
NmuCI GTSAC 2 cut(s) 452, 545
NspI RCATGY 1 cut(s) 47
NspV TTCGAA 1 cut(s) 1298
PaeI GCATGC 1 cut(s) 47
PagI TCATGA 1 cut(s) 1174
PciSI GCTCTTC 1 cut(s) 271
PfeI GAWTC 6 cut(s) 167, 352, 612, 628, 985, 1217
PkrI GCNGC 1 cut(s) 63
PleI GAGTC 6 cut(s) 38, 211, 222, 499, 542, 928
PpsI GAGTC 6 cut(s) 38, 211, 222, 499, 542, 928
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 117
PspFI CCCAGC 1 cut(s) 709
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 861
PspPI GGNCC 2 cut(s) 254, 296
PspPPI RGGWCCY 1 cut(s) 254
PsuI RGATCY 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 709
RsaI GTAC 3 cut(s) 409, 963, 1201
RsaNI GTAC 3 cut(s) 408, 962, 1200
RseI CAYNNNNRTG 1 cut(s) 1207
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 5 cut(s) 141, 338, 443, 681, 882
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 9 cut(s) 5, 15, 93, 226, 331, 778, 1171, 1267, 1389
Sau96I GGNCC 2 cut(s) 254, 296
SchI GAGTC 6 cut(s) 39, 212, 223, 499, 542, 929
ScrFI CCNGG 1 cut(s) 119
SfaNI GCATC 3 cut(s) 251, 385, 884
SfcI CTRYAG 2 cut(s) 327, 1162
SfuI TTCGAA 1 cut(s) 1298
SinI GGWCC 2 cut(s) 254, 296
SmiMI CAYNNNNRTG 1 cut(s) 1207
SphI GCATGC 1 cut(s) 47
SsiI CCGC 1 cut(s) 1167
SspI AATATT 1 cut(s) 1114
SspMI CTAG 3 cut(s) 450, 1205, 1403
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 2 cut(s) 1253, 1371
TaaI ACNGT 4 cut(s) 90, 186, 795, 935
TaiI ACGT 2 cut(s) 27, 681
TaqI TCGA 4 cut(s) 92, 259, 819, 1298
TatI WGTACW 1 cut(s) 1199
TfiI GAWTC 6 cut(s) 167, 352, 612, 628, 985, 1217
Tru1I TTAA 5 cut(s) 141, 338, 443, 681, 882
Tru9I TTAA 5 cut(s) 141, 338, 443, 681, 882
TseFI GTSAC 2 cut(s) 452, 545
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 2 cut(s) 452, 545
TspDTI ATGAA 3 cut(s) 926, 939, 1238
TspGWI ACGGA 1 cut(s) 985
VpaK11BI GGWCC 2 cut(s) 254, 296
XapI RAATTY 3 cut(s) 319, 764, 895
XceI RCATGY 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 696
XspI CTAG 3 cut(s) 450, 1205, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.