histone-lysine N-methyltransferase, H3 lysine-9 specific
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 199 | 3.2e-54 | TIR domain |
| TIR_2 | PF13676 | 25 - 121 | 3.4e-13 | TIR domain |
| NB-ARC | PF00931 | 219 - 378 | 2.8e-22 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 445 - 523 | 1.7e-10 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 712 - 796 | 4.1e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 754 - 836 | 6.4e-10 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 865 - 951 | 1.4e-07 | Leucine-rich repeat region |
| C-JID | PF20160 | 1020 - 1170 | 3.5e-10 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1068, 3053 |
| AatII | GACGTC | 1 cut(s) | 75 |
| Acc65I | GGTACC | 1 cut(s) | 3400 |
| AccB1I | GGYRCC | 2 cut(s) | 2787, 3400 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1609, 2192 |
| AccI | GTMKAC | 3 cut(s) | 435, 1585, 1950 |
| AccIII | TCCGGA | 3 cut(s) | 205, 2372, 3130 |
| AciI | CCGC | 4 cut(s) | 103, 1672, 2269, 3480 |
| AclWI | GGATC | 9 cut(s) | 15, 199, 954, 1140, 1950, 2524, 2715, 3023, 3185 |
| AcoI | YGGCCR | 1 cut(s) | 480 |
| AcsI | RAATTY | 7 cut(s) | 738, 1293, 1745, 2189, 2209, 2384, 3069 |
| AcuI | CTGAAG | 6 cut(s) | 1093, 1752, 2276, 2366, 2783, 3530 |
| AcyI | GRCGYC | 1 cut(s) | 72 |
| AdeI | CACNNNGTG | 1 cut(s) | 282 |
| AfaI | GTAC | 9 cut(s) | 13, 372, 669, 805, 2026, 2098, 2502, 2697, 3402 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 608, 1609, 2192, 3012 |
| AflII | CTTAAG | 3 cut(s) | 1871, 2000, 2141 |
| AjnI | CCWGG | 7 cut(s) | 278, 879, 1282, 1579, 3058, 3396, 3586 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 408, 440, 975, 1007 |
| AleI | CACNNNNGTG | 1 cut(s) | 1511 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1679, 1711 |
| Alw21I | GWGCWC | 5 cut(s) | 213, 531, 1107, 1915, 3429 |
| Alw26I | GTCTC | 7 cut(s) | 1328, 1470, 1572, 1731, 1797, 2117, 2989 |
| AlwI | GGATC | 9 cut(s) | 15, 199, 954, 1140, 1950, 2524, 2715, 3023, 3185 |
| Ama87I | CYCGRG | 1 cut(s) | 1023 |
| Aor13HI | TCCGGA | 3 cut(s) | 205, 2372, 3130 |
| AoxI | GGCC | 5 cut(s) | 480, 1237, 1771, 2278, 3003 |
| ApeKI | GCWGC | 2 cut(s) | 1590, 1887 |
| ApoI | RAATTY | 7 cut(s) | 738, 1293, 1745, 2189, 2209, 2384, 3069 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1554, 2983 |
| Asp718I | GGTACC | 1 cut(s) | 3400 |
| AspLEI | GCGC | 1 cut(s) | 221 |
| AspS9I | GGNCC | 3 cut(s) | 53, 1772, 3584 |
| AsuHPI | GGTGA | 4 cut(s) | 104, 397, 460, 2511 |
| AsuII | TTCGAA | 2 cut(s) | 3375, 3498 |
| AvaI | CYCGRG | 1 cut(s) | 1023 |
| AvaII | GGWCC | 2 cut(s) | 53, 3584 |
| BaeGI | GKGCMC | 1 cut(s) | 3487 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 795, 828 |
| BalI | TGGCCA | 1 cut(s) | 482 |
| BanI | GGYRCC | 2 cut(s) | 2787, 3400 |
| BanII | GRGCYC | 4 cut(s) | 213, 531, 1107, 3429 |
| BbsI | GAAGAC | 6 cut(s) | 102, 543, 713, 1427, 1826, 2315 |
| Bbv12I | GWGCWC | 5 cut(s) | 213, 531, 1107, 1915, 3429 |
| BbvI | GCAGC | 2 cut(s) | 1602, 1899 |
| BceAI | ACGGC | 2 cut(s) | 586, 1578 |
| BciT130I | CCWGG | 7 cut(s) | 280, 881, 1284, 1581, 3060, 3398, 3588 |
| BciVI | GTATCC | 2 cut(s) | 1830, 2675 |
| BcoDI | GTCTC | 7 cut(s) | 1328, 1470, 1572, 1731, 1797, 2117, 2989 |
| BfrI | CTTAAG | 3 cut(s) | 1871, 2000, 2141 |
| BfuI | GTATCC | 2 cut(s) | 1830, 2675 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2277 |
| BglII | AGATCT | 2 cut(s) | 2812, 2897 |
| BisI | GCNGC | 2 cut(s) | 1591, 1888 |
| BlpI | GCTNAGC | 1 cut(s) | 3428 |
| BlsI | GCNGC | 2 cut(s) | 1592, 1889 |
| BmcAI | AGTACT | 1 cut(s) | 2502 |
| Bme1390I | CCNGG | 7 cut(s) | 280, 881, 1284, 1581, 3060, 3398, 3588 |
| Bme18I | GGWCC | 2 cut(s) | 53, 3584 |
| BmeT110I | CYCGRG | 1 cut(s) | 1023 |
| BmgT120I | GGNCC | 3 cut(s) | 53, 1772, 3584 |
| BmiI | GGNNCC | 3 cut(s) | 886, 2789, 3402 |
| BmrFI | CCNGG | 7 cut(s) | 280, 881, 1284, 1581, 3060, 3398, 3588 |
| BmsI | GCATC | 6 cut(s) | 38, 1509, 1866, 2366, 2754, 3328 |
| BpiI | GAAGAC | 6 cut(s) | 102, 543, 713, 1427, 1826, 2315 |
| BpmI | CTGGAG | 1 cut(s) | 1121 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3428 |
| Bpu14I | TTCGAA | 2 cut(s) | 3375, 3498 |
| BpuEI | CTTGAG | 5 cut(s) | 235, 636, 928, 1640, 3433 |
| BsaAI | YACGTR | 1 cut(s) | 197 |
| BsaBI | GATNNNNATC | 1 cut(s) | 945 |
| BsaHI | GRCGYC | 1 cut(s) | 72 |
| BsaJI | CCNNGG | 4 cut(s) | 56, 363, 880, 3453 |
| BsaWI | WCCGGW | 4 cut(s) | 205, 2372, 2775, 3130 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1975, 2005 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 608, 1609, 2192, 3012 |
| Bse1I | ACTGG | 4 cut(s) | 1431, 2955, 3265, 3351 |
| Bse3DI | GCAATG | 4 cut(s) | 461, 2052, 2064, 2161 |
| Bse8I | GATNNNNATC | 1 cut(s) | 945 |
| BseAI | TCCGGA | 3 cut(s) | 205, 2372, 3130 |
| BseBI | CCWGG | 7 cut(s) | 280, 881, 1284, 1581, 3060, 3398, 3588 |
| BseDI | CCNNGG | 4 cut(s) | 56, 363, 880, 3453 |
| BseGI | GGATG | 9 cut(s) | 116, 175, 295, 373, 568, 696, 2381, 3162, 3540 |
| BseJI | GATNNNNATC | 1 cut(s) | 945 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 608, 1609, 2192, 3012 |
| BseMI | GCAATG | 4 cut(s) | 461, 2052, 2064, 2161 |
| BseMII | CTCAG | 5 cut(s) | 71, 1857, 2984, 3023, 3442 |
| BseNI | ACTGG | 4 cut(s) | 1431, 2955, 3265, 3351 |
| BseRI | GAGGAG | 5 cut(s) | 2908, 3117, 3509, 3587, 3590 |
| BseSI | GKGCMC | 1 cut(s) | 3487 |
| BseXI | GCAGC | 2 cut(s) | 1602, 1899 |
| BsgI | GTGCAG | 1 cut(s) | 1017 |
| BshFI | GGCC | 5 cut(s) | 482, 1239, 1773, 2280, 3005 |
| BshNI | GGYRCC | 2 cut(s) | 2787, 3400 |
| BsiHKAI | GWGCWC | 5 cut(s) | 213, 531, 1107, 1915, 3429 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1023 |
| BsiSI | CCGG | 5 cut(s) | 41, 206, 2373, 2776, 3131 |
| BslFI | GGGAC | 3 cut(s) | 1230, 2237, 2248 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 608, 1609, 2192, 3012 |
| BsmAI | GTCTC | 7 cut(s) | 1328, 1470, 1572, 1731, 1797, 2117, 2989 |
| BsmBI | CGTCTC | 1 cut(s) | 2989 |
| BsmFI | GGGAC | 3 cut(s) | 1230, 2237, 2248 |
| BsmI | GAATGC | 1 cut(s) | 2596 |
| BsnI | GGCC | 5 cut(s) | 482, 1239, 1773, 2280, 3005 |
| BsoBI | CYCGRG | 1 cut(s) | 1023 |
| Bsp119I | TTCGAA | 2 cut(s) | 3375, 3498 |
| Bsp1286I | GDGCHC | 6 cut(s) | 213, 531, 1107, 1915, 3429, 3487 |
| Bsp13I | TCCGGA | 3 cut(s) | 205, 2372, 3130 |
| Bsp1407I | TGTACA | 3 cut(s) | 2024, 2096, 2695 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3428 |
| BspACI | CCGC | 4 cut(s) | 103, 1672, 2269, 3480 |
| BspANI | GGCC | 5 cut(s) | 482, 1239, 1773, 2280, 3005 |
| BspCNI | CTCAG | 5 cut(s) | 72, 1858, 2985, 3022, 3441 |
| BspEI | TCCGGA | 3 cut(s) | 205, 2372, 3130 |
| BspLI | GGNNCC | 3 cut(s) | 886, 2789, 3402 |
| BspPI | GGATC | 9 cut(s) | 15, 199, 954, 1140, 1950, 2524, 2715, 3023, 3185 |
| BspQI | GCTCTTC | 1 cut(s) | 1112 |
| BspT104I | TTCGAA | 2 cut(s) | 3375, 3498 |
| BspT107I | GGYRCC | 2 cut(s) | 2787, 3400 |
| BspTI | CTTAAG | 3 cut(s) | 1871, 2000, 2141 |
| BsrDI | GCAATG | 4 cut(s) | 461, 2052, 2064, 2161 |
| BsrGI | TGTACA | 3 cut(s) | 2024, 2096, 2695 |
| BsrI | ACTGG | 4 cut(s) | 1431, 2955, 3265, 3351 |
| BssECI | CCNNGG | 4 cut(s) | 56, 363, 880, 3453 |
| BssNAI | GTATAC | 1 cut(s) | 1951 |
| BssNI | GRCGYC | 1 cut(s) | 72 |
| BssT1I | CCWWGG | 1 cut(s) | 3453 |
| Bst1107I | GTATAC | 1 cut(s) | 1951 |
| Bst2UI | CCWGG | 7 cut(s) | 280, 881, 1284, 1581, 3060, 3398, 3588 |
| Bst4CI | ACNGT | 5 cut(s) | 1221, 2096, 2828, 3389, 3566 |
| Bst6I | CTCTTC | 3 cut(s) | 39, 411, 1112 |
| BstACI | GRCGYC | 1 cut(s) | 72 |
| BstAFI | CTTAAG | 3 cut(s) | 1871, 2000, 2141 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 329 |
| BstAUI | TGTACA | 3 cut(s) | 2024, 2096, 2695 |
| BstBAI | YACGTR | 1 cut(s) | 197 |
| BstBI | TTCGAA | 2 cut(s) | 3375, 3498 |
| BstC8I | GCNNGC | 3 cut(s) | 150, 1676, 3165 |
| BstF5I | GGATG | 9 cut(s) | 116, 175, 295, 373, 568, 696, 2381, 3162, 3540 |
| BstHHI | GCGC | 1 cut(s) | 221 |
| BstMAI | GTCTC | 7 cut(s) | 1328, 1470, 1572, 1731, 1797, 2117, 2989 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 145, 329, 656, 1045, 1599, 1876, 2068, 2277 |
| BstNI | CCWGG | 7 cut(s) | 280, 881, 1284, 1581, 3060, 3398, 3588 |
| BstSCI | CCNGG | 7 cut(s) | 278, 879, 1282, 1579, 3058, 3396, 3586 |
| BstSLI | GKGCMC | 1 cut(s) | 3487 |
| BstV1I | GCAGC | 2 cut(s) | 1602, 1899 |
| BstV2I | GAAGAC | 6 cut(s) | 102, 543, 713, 1427, 1826, 2315 |
| BstX2I | RGATCY | 6 cut(s) | 20, 1942, 2707, 2812, 2897, 3015 |
| BstYI | RGATCY | 6 cut(s) | 20, 1942, 2707, 2812, 2897, 3015 |
| BstZ17I | GTATAC | 1 cut(s) | 1951 |
| BsuI | GTATCC | 2 cut(s) | 1830, 2675 |
| BsuRI | GGCC | 5 cut(s) | 482, 1239, 1773, 2280, 3005 |
| BtsCI | GGATG | 9 cut(s) | 116, 175, 295, 373, 568, 696, 2381, 3162, 3540 |
| BtsIMutI | CAGTG | 1 cut(s) | 2158 |
| Cac8I | GCNNGC | 3 cut(s) | 150, 1676, 3165 |
| CfoI | GCGC | 1 cut(s) | 221 |
| Cfr13I | GGNCC | 3 cut(s) | 53, 1772, 3584 |
| CseI | GACGC | 2 cut(s) | 446, 1596 |
| CsiI | ACCWGGT | 3 cut(s) | 278, 1579, 3396 |
| Csp6I | GTAC | 9 cut(s) | 12, 371, 668, 804, 2025, 2097, 2501, 2696, 3401 |
| CviQI | GTAC | 9 cut(s) | 12, 371, 668, 804, 2025, 2097, 2501, 2696, 3401 |
| DraIII | CACNNNGTG | 1 cut(s) | 282 |
| EaeI | YGGCCR | 1 cut(s) | 480 |
| Eam1104I | CTCTTC | 3 cut(s) | 39, 411, 1112 |
| EarI | CTCTTC | 3 cut(s) | 39, 411, 1112 |
| Ecl136II | GAGCTC | 4 cut(s) | 211, 529, 1105, 3427 |
| Eco130I | CCWWGG | 1 cut(s) | 3453 |
| Eco24I | GRGCYC | 4 cut(s) | 213, 531, 1107, 3429 |
| Eco32I | GATATC | 1 cut(s) | 2368 |
| Eco47I | GGWCC | 2 cut(s) | 53, 3584 |
| Eco53kI | GAGCTC | 4 cut(s) | 211, 529, 1105, 3427 |
| Eco57I | CTGAAG | 6 cut(s) | 1093, 1752, 2276, 2366, 2783, 3530 |
| Eco88I | CYCGRG | 1 cut(s) | 1023 |
| EcoICRI | GAGCTC | 4 cut(s) | 211, 529, 1105, 3427 |
| EcoO109I | RGGNCCY | 1 cut(s) | 53 |
| EcoRII | CCWGG | 7 cut(s) | 278, 879, 1282, 1579, 3058, 3396, 3586 |
| EcoRV | GATATC | 1 cut(s) | 2368 |
| EcoT14I | CCWWGG | 1 cut(s) | 3453 |
| EcoT22I | ATGCAT | 2 cut(s) | 414, 1524 |
| EcoT38I | GRGCYC | 4 cut(s) | 213, 531, 1107, 3429 |
| ErhI | CCWWGG | 1 cut(s) | 3453 |
| Esp3I | CGTCTC | 1 cut(s) | 2989 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 890, 922, 2339, 2371 |
| FaqI | GGGAC | 3 cut(s) | 1230, 2237, 2248 |
| FauI | CCCGC | 2 cut(s) | 110, 3473 |
| FauNDI | CATATG | 4 cut(s) | 1608, 1840, 2336, 2439 |
| FblI | GTMKAC | 3 cut(s) | 435, 1585, 1950 |
| Fnu4HI | GCNGC | 2 cut(s) | 1591, 1888 |
| FokI | GGATG | 9 cut(s) | 103, 182, 302, 380, 555, 703, 2388, 3169, 3527 |
| FriOI | GRGCYC | 4 cut(s) | 213, 531, 1107, 3429 |
| Fsp4HI | GCNGC | 2 cut(s) | 1591, 1888 |
| GlaI | GCGC | 1 cut(s) | 220 |
| GluI | GCNGC | 2 cut(s) | 1591, 1888 |
| GsuI | CTGGAG | 1 cut(s) | 1121 |
| HaeIII | GGCC | 5 cut(s) | 482, 1239, 1773, 2280, 3005 |
| HapII | CCGG | 5 cut(s) | 41, 206, 2373, 2776, 3131 |
| HgaI | GACGC | 2 cut(s) | 446, 1596 |
| HhaI | GCGC | 1 cut(s) | 221 |
| Hin1I | GRCGYC | 1 cut(s) | 72 |
| Hin6I | GCGC | 1 cut(s) | 219 |
| HinP1I | GCGC | 1 cut(s) | 219 |
| HincII | GTYRAC | 3 cut(s) | 436, 1586, 2956 |
| HindII | GTYRAC | 3 cut(s) | 436, 1586, 2956 |
| HindIII | AAGCTT | 1 cut(s) | 3119 |
| HpaII | CCGG | 5 cut(s) | 41, 206, 2373, 2776, 3131 |
| HphI | GGTGA | 4 cut(s) | 104, 397, 460, 2511 |
| Hpy166II | GTNNAC | 6 cut(s) | 436, 894, 1586, 1759, 1951, 2956 |
| Hpy8I | GTNNAC | 6 cut(s) | 436, 894, 1586, 1759, 1951, 2956 |
| Hpy99I | CGWCG | 3 cut(s) | 74, 440, 1590 |
| HpyCH4III | ACNGT | 5 cut(s) | 1221, 2096, 2828, 3389, 3566 |
| HpyCH4IV | ACGT | 5 cut(s) | 72, 196, 1033, 1512, 3487 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 145, 329, 656, 1045, 1599, 1876, 2068, 2277 |
| HpySE526I | ACGT | 5 cut(s) | 72, 196, 1033, 1512, 3487 |
| Hsp92I | GRCGYC | 1 cut(s) | 72 |
| HspAI | GCGC | 1 cut(s) | 219 |
| Kpn2I | TCCGGA | 3 cut(s) | 205, 2372, 3130 |
| KpnI | GGTACC | 1 cut(s) | 3404 |
| LguI | GCTCTTC | 1 cut(s) | 1112 |
| LmnI | GCTCC | 5 cut(s) | 208, 1102, 1910, 2005, 2621 |
| Lsp1109I | GCAGC | 2 cut(s) | 1602, 1899 |
| LweI | GCATC | 6 cut(s) | 38, 1509, 1866, 2366, 2754, 3328 |
| MabI | ACCWGGT | 3 cut(s) | 278, 1579, 3396 |
| MaeII | ACGT | 5 cut(s) | 72, 196, 1033, 1512, 3487 |
| MaeIII | GTNAC | 4 cut(s) | 2728, 3323, 3448, 3566 |
| MfeI | CAATTG | 4 cut(s) | 243, 2262, 2804, 2938 |
| MflI | RGATCY | 6 cut(s) | 20, 1942, 2707, 2812, 2897, 3015 |
| MhlI | GDGCHC | 6 cut(s) | 213, 531, 1107, 1915, 3429, 3487 |
| MlsI | TGGCCA | 1 cut(s) | 482 |
| MluNI | TGGCCA | 1 cut(s) | 482 |
| MlyI | GAGTC | 8 cut(s) | 471, 611, 1017, 1574, 2119, 2578, 3245, 3587 |
| MmeI | TCCRAC | 1 cut(s) | 589 |
| Mox20I | TGGCCA | 1 cut(s) | 482 |
| Mph1103I | ATGCAT | 2 cut(s) | 414, 1524 |
| MroI | TCCGGA | 3 cut(s) | 205, 2372, 3130 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1554, 2983 |
| MscI | TGGCCA | 1 cut(s) | 482 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1511, 2057, 2442, 2841, 3151 |
| Msp20I | TGGCCA | 1 cut(s) | 482 |
| MspA1I | CMGCKG | 1 cut(s) | 2362 |
| MspCI | CTTAAG | 3 cut(s) | 1871, 2000, 2141 |
| MspI | CCGG | 5 cut(s) | 41, 206, 2373, 2776, 3131 |
| MspR9I | CCNGG | 7 cut(s) | 280, 881, 1284, 1581, 3060, 3398, 3588 |
| MunI | CAATTG | 4 cut(s) | 243, 2262, 2804, 2938 |
| Mva1269I | GAATGC | 1 cut(s) | 2596 |
| MvaI | CCWGG | 7 cut(s) | 280, 881, 1284, 1581, 3060, 3398, 3588 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 145, 329, 656, 1045, 1599, 1876, 2068, 2277 |
| NdeI | CATATG | 4 cut(s) | 1608, 1840, 2336, 2439 |
| NlaIV | GGNNCC | 3 cut(s) | 886, 2789, 3402 |
| NmeAIII | GCCGAG | 1 cut(s) | 1265 |
| NmuCI | GTSAC | 3 cut(s) | 3323, 3448, 3566 |
| NsiI | ATGCAT | 2 cut(s) | 414, 1524 |
| NspV | TTCGAA | 2 cut(s) | 3375, 3498 |
| OliI | CACNNNNGTG | 1 cut(s) | 1511 |
| PaeR7I | CTCGAG | 1 cut(s) | 1023 |
| PciSI | GCTCTTC | 1 cut(s) | 1112 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 379, 1030, 1591 |
| PctI | GAATGC | 1 cut(s) | 2596 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1554, 2983 |
| PfeI | GAWTC | 9 cut(s) | 47, 230, 500, 590, 2135, 2182, 3104, 3134, 3442 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1609, 2192 |
| PfoI | TCCNGGA | 1 cut(s) | 3058 |
| PkrI | GCNGC | 2 cut(s) | 1592, 1889 |
| PleI | GAGTC | 8 cut(s) | 470, 611, 1016, 1573, 2118, 2577, 3245, 3586 |
| PpsI | GAGTC | 8 cut(s) | 470, 611, 1016, 1573, 2118, 2577, 3245, 3586 |
| Ppu21I | YACGTR | 1 cut(s) | 197 |
| PpuMI | RGGWCCY | 1 cut(s) | 53 |
| PsiI | TTATAA | 2 cut(s) | 1068, 3053 |
| Psp124BI | GAGCTC | 4 cut(s) | 213, 531, 1107, 3429 |
| Psp5II | RGGWCCY | 1 cut(s) | 53 |
| Psp6I | CCWGG | 7 cut(s) | 278, 879, 1282, 1579, 3058, 3396, 3586 |
| PspGI | CCWGG | 7 cut(s) | 278, 879, 1282, 1579, 3058, 3396, 3586 |
| PspN4I | GGNNCC | 3 cut(s) | 886, 2789, 3402 |
| PspPI | GGNCC | 3 cut(s) | 53, 1772, 3584 |
| PspPPI | RGGWCCY | 1 cut(s) | 53 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 877, 909 |
| PsuI | RGATCY | 6 cut(s) | 20, 1942, 2707, 2812, 2897, 3015 |
| PvuII | CAGCTG | 1 cut(s) | 2362 |
| RsaI | GTAC | 9 cut(s) | 13, 372, 669, 805, 2026, 2098, 2502, 2697, 3402 |
| RsaNI | GTAC | 9 cut(s) | 12, 371, 668, 804, 2025, 2097, 2501, 2696, 3401 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1511, 2057, 2442, 2841, 3151 |
| SacI | GAGCTC | 4 cut(s) | 213, 531, 1107, 3429 |
| SalI | GTCGAC | 2 cut(s) | 434, 1584 |
| SapI | GCTCTTC | 1 cut(s) | 1112 |
| SatI | GCNGC | 2 cut(s) | 1591, 1888 |
| Sau96I | GGNCC | 3 cut(s) | 53, 1772, 3584 |
| ScaI | AGTACT | 1 cut(s) | 2502 |
| SchI | GAGTC | 8 cut(s) | 471, 611, 1017, 1574, 2119, 2578, 3245, 3587 |
| ScrFI | CCNGG | 7 cut(s) | 280, 881, 1284, 1581, 3060, 3398, 3588 |
| SduI | GDGCHC | 6 cut(s) | 213, 531, 1107, 1915, 3429, 3487 |
| SexAI | ACCWGGT | 3 cut(s) | 278, 1579, 3396 |
| SfaNI | GCATC | 6 cut(s) | 38, 1509, 1866, 2366, 2754, 3328 |
| Sfr274I | CTCGAG | 1 cut(s) | 1023 |
| SfuI | TTCGAA | 2 cut(s) | 3375, 3498 |
| SinI | GGWCC | 2 cut(s) | 53, 3584 |
| SlaI | CTCGAG | 1 cut(s) | 1023 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1511, 2057, 2442, 2841, 3151 |
| SmlI | CTYRAG | 9 cut(s) | 214, 651, 907, 1023, 1655, 1871, 2000, 2141, 3412 |
| SmoI | CTYRAG | 9 cut(s) | 214, 651, 907, 1023, 1655, 1871, 2000, 2141, 3412 |
| SsiI | CCGC | 4 cut(s) | 103, 1672, 2269, 3480 |
| SspI | AATATT | 5 cut(s) | 345, 2650, 2982, 3332, 3617 |
| SstI | GAGCTC | 4 cut(s) | 213, 531, 1107, 3429 |
| StyD4I | CCNGG | 7 cut(s) | 278, 879, 1282, 1579, 3058, 3396, 3586 |
| StyI | CCWWGG | 1 cut(s) | 3453 |
| TaaI | ACNGT | 5 cut(s) | 1221, 2096, 2828, 3389, 3566 |
| TaiI | ACGT | 5 cut(s) | 75, 199, 1036, 1515, 3490 |
| TaqI | TCGA | 9 cut(s) | 226, 309, 435, 534, 1024, 1585, 2017, 3375, 3498 |
| TaqII | GACCGA | 1 cut(s) | 189 |
| TatI | WGTACW | 4 cut(s) | 2024, 2096, 2500, 2695 |
| TfiI | GAWTC | 9 cut(s) | 47, 230, 500, 590, 2135, 2182, 3104, 3134, 3442 |
| TscAI | CASTG | 1 cut(s) | 2158 |
| TseFI | GTSAC | 3 cut(s) | 3323, 3448, 3566 |
| TseI | GCWGC | 2 cut(s) | 1590, 1887 |
| Tsp45I | GTSAC | 3 cut(s) | 3323, 3448, 3566 |
| TspGWI | ACGGA | 1 cut(s) | 3540 |
| TspRI | CASTG | 1 cut(s) | 2158 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1609, 2192 |
| Vha464I | CTTAAG | 3 cut(s) | 1871, 2000, 2141 |
| VpaK11BI | GGWCC | 2 cut(s) | 53, 3584 |
| XapI | RAATTY | 7 cut(s) | 738, 1293, 1745, 2189, 2209, 2384, 3069 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 283, 721 |
| XhoI | CTCGAG | 1 cut(s) | 1023 |
| XmiI | GTMKAC | 3 cut(s) | 435, 1585, 1950 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1554, 2983 |
| ZraI | GACGTC | 1 cut(s) | 73 |
| ZrmI | AGTACT | 1 cut(s) | 2502 |
| Zsp2I | ATGCAT | 2 cut(s) | 414, 1524 |