Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

39554882 .. 39557599

Gene Structure 2718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG312700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 808 bp

ATGATTCAACCTTTACTGTCAGACAATCTTGGAAATGCATGTCTTATAAGTTTTTTTGTGACCGGAGCCTGGGACCACGCCAAACTTCTGCAGTCTCTAAAGGCATACCAAAATGTTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTATACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGATGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACCAAAGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTGTTAAGGGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGGCTGTGGTAAATTGTTACATGTATTGCAAGTCTATTCAAGTTGCTCAAAACGTGAAGCTTCCCAGAGATGCCACTGGATGCAATTGCAAAGGAAGTTGTGTAGATTCCAAGACCTGCCAATGTGCCAAACTTAACGGCTCTGACTTCCCATATGTGCACCGTGATGGTGGCAGATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGGTTGTGGACCTTCTATGTCAACCGTACTTCTCAGACGGAGCTCAAGTACCGATTTGAGGTTGTGTTTCACTACAGCTATTTTGGATGTCTTGCAAATACTAATGTTAAGAGGTACTGGACTCTTCTTCACTGCATTTGCGCTTCATTTCAAGTGTGATTCATGGACGTTGAAAATGAAGGAAGACAGACCAGATGATGTCTGTGATGCCTACCATACATATTTTGGTGTAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

269

Amino Acids

29.83

Weight (kDa)

8.3

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-SET	PF05033	122 - 194	6.7e-11	Pre-SET motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	476
AccB7I	CCANNNNNTGG	1 cut(s)	572
AclWI	GGATC	2 cut(s)	230, 243
AfaI	GTAC	3 cut(s)	600, 622, 688
AfiI	CCNNNNNNNGG	3 cut(s)	69, 572, 630
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	8 cut(s)	8, 119, 266, 392, 536, 557, 724, 745
AjnI	CCWGG	2 cut(s)	68, 238
AluBI	AGCT	4 cut(s)	292, 412, 615, 650
AluI	AGCT	4 cut(s)	292, 412, 615, 650
Alw21I	GWGCWC	2 cut(s)	513, 617
Alw26I	GTCTC	2 cut(s)	99, 248
Alw44I	GTGCAC	1 cut(s)	509
AlwI	GGATC	2 cut(s)	230, 243
AoxI	GGCC	2 cut(s)	201, 563
ApaLI	GTGCAC	1 cut(s)	509
ApeKI	GCWGC	2 cut(s)	221, 224
AseI	ATTAAT	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	4 cut(s)	73, 202, 563, 581
AvaII	GGWCC	2 cut(s)	73, 581
BaeGI	GKGCMC	1 cut(s)	513
BamHI	GGATCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	762
Bbv12I	GWGCWC	2 cut(s)	513, 617
BbvI	GCAGC	2 cut(s)	208, 211
BccI	CCATC	1 cut(s)	512
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	2 cut(s)	70, 240
BcoDI	GTCTC	2 cut(s)	99, 248
BfaI	CTAG	2 cut(s)	185, 293
BfmI	CTRYAG	2 cut(s)	89, 645
BfuAI	ACCTGC	1 cut(s)	476
BglII	AGATCT	1 cut(s)	320
BisI	GCNGC	2 cut(s)	222, 225
BlsI	GCNGC	2 cut(s)	223, 226
Bme1390I	CCNGG	2 cut(s)	70, 240
Bme18I	GGWCC	2 cut(s)	73, 581
BmgT120I	GGNCC	4 cut(s)	73, 202, 563, 581
BmiI	GGNNCC	3 cut(s)	67, 74, 237
BmrFI	CCNGG	2 cut(s)	70, 240
BmsI	GCATC	6 cut(s)	208, 344, 353, 412, 422, 769
BpiI	GAAGAC	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	601
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	69, 540
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	604, 634
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 572, 630
Bse1I	ACTGG	3 cut(s)	214, 433, 694
BseBI	CCWGG	2 cut(s)	70, 240
BseDI	CCNNGG	2 cut(s)	69, 540
BseGI	GGATG	4 cut(s)	138, 437, 550, 664
BseLI	CCNNNNNNNGG	3 cut(s)	69, 572, 630
BseMII	CTCAG	1 cut(s)	619
BseNI	ACTGG	3 cut(s)	214, 433, 694
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	2 cut(s)	208, 211
BshFI	GGCC	2 cut(s)	203, 565
BsiHKAI	GWGCWC	2 cut(s)	513, 617
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	2 cut(s)	86, 324
BslI	CCNNNNNNNGG	3 cut(s)	69, 572, 630
BsmAI	GTCTC	2 cut(s)	99, 248
BsmFI	GGGAC	2 cut(s)	86, 324
BsnI	GGCC	2 cut(s)	203, 565
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	513, 617
Bsp143I	GATC	2 cut(s)	235, 320
BspANI	GGCC	2 cut(s)	203, 565
BspCNI	CTCAG	1 cut(s)	618
BspLI	GGNNCC	3 cut(s)	67, 74, 237
BspMAI	CTGCAG	1 cut(s)	93
BspMI	ACCTGC	1 cut(s)	476
BspPI	GGATC	2 cut(s)	230, 243
BspTNI	GGTCTC	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	214, 433, 694
BssECI	CCNNGG	2 cut(s)	69, 540
BssMI	GATC	2 cut(s)	235, 320
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	2 cut(s)	70, 240
Bst4CI	ACNGT	5 cut(s)	18, 164, 172, 515, 598
Bst6I	CTCTTC	1 cut(s)	701
BstDEI	CTNAG	1 cut(s)	605
BstF5I	GGATG	4 cut(s)	138, 437, 550, 664
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	2 cut(s)	238, 323
BstMAI	GTCTC	2 cut(s)	99, 248
BstMBI	GATC	2 cut(s)	235, 320
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	2 cut(s)	70, 240
BstNSI	RCATGY	3 cut(s)	42, 317, 376
BstSCI	CCNGG	2 cut(s)	68, 238
BstSFI	CTRYAG	2 cut(s)	89, 645
BstSLI	GKGCMC	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	208, 211
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	2 cut(s)	235, 320
BstYI	RGATCY	2 cut(s)	235, 320
BsuRI	GGCC	2 cut(s)	203, 565
BtsCI	GGATG	4 cut(s)	138, 437, 550, 664
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	2 cut(s)	426, 702
BveI	ACCTGC	1 cut(s)	476
CfoI	GCGC	1 cut(s)	715
Cfr13I	GGNCC	4 cut(s)	73, 202, 563, 581
Csp6I	GTAC	3 cut(s)	599, 621, 687
CviAII	CATG	4 cut(s)	39, 314, 373, 735
CviQI	GTAC	3 cut(s)	599, 621, 687
DdeI	CTNAG	1 cut(s)	605
DpnI	GATC	2 cut(s)	237, 322
DpnII	GATC	2 cut(s)	235, 320
DraI	TTTAAA	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
Ecl136II	GAGCTC	1 cut(s)	615
Eco130I	CCWWGG	1 cut(s)	540
Eco24I	GRGCYC	1 cut(s)	617
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	73, 581
Eco53kI	GAGCTC	1 cut(s)	615
EcoICRI	GAGCTC	1 cut(s)	615
EcoRII	CCWGG	2 cut(s)	68, 238
EcoT14I	CCWWGG	1 cut(s)	540
EcoT22I	ATGCAT	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	617
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	4 cut(s)	42, 317, 376, 738
FaqI	GGGAC	2 cut(s)	86, 324
FatI	CATG	4 cut(s)	38, 313, 372, 734
FauNDI	CATATG	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	222, 225
FokI	GGATG	4 cut(s)	145, 444, 557, 671
FriOI	GRGCYC	1 cut(s)	617
Fsp4HI	GCNGC	2 cut(s)	222, 225
FspBI	CTAG	2 cut(s)	185, 293
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	2 cut(s)	222, 225
HaeIII	GGCC	2 cut(s)	203, 565
HapII	CCGG	1 cut(s)	63
HhaI	GCGC	1 cut(s)	715
Hin1II	CATG	4 cut(s)	42, 317, 376, 738
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HincII	GTYRAC	2 cut(s)	277, 594
HindII	GTYRAC	2 cut(s)	277, 594
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	4 cut(s)	4, 458, 693, 731
HpaI	GTTAAC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	63
Hpy166II	GTNNAC	5 cut(s)	175, 277, 511, 581, 594
Hpy188I	TCNGA	3 cut(s)	22, 496, 608
Hpy188III	TCNNGA	3 cut(s)	146, 185, 284
Hpy8I	GTNNAC	5 cut(s)	175, 277, 511, 581, 594
HpyAV	CCTTC	3 cut(s)	290, 594, 745
HpyCH4III	ACNGT	5 cut(s)	18, 164, 172, 515, 598
HpyCH4IV	ACGT	2 cut(s)	405, 740
HpyCH4V	TGCA	9 cut(s)	38, 91, 335, 381, 435, 441, 511, 667, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	1 cut(s)	605
HpySE526I	ACGT	2 cut(s)	405, 740
Hsp92II	CATG	4 cut(s)	42, 317, 376, 738
HspAI	GCGC	1 cut(s)	713
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	235, 320
LmnI	GCTCC	2 cut(s)	65, 612
Lsp1109I	GCAGC	2 cut(s)	208, 211
LweI	GCATC	6 cut(s)	208, 344, 353, 412, 422, 769
MaeI	CTAG	2 cut(s)	185, 293
MaeII	ACGT	2 cut(s)	405, 740
MaeIII	GTNAC	2 cut(s)	58, 368
MalI	GATC	2 cut(s)	237, 322
MboI	GATC	2 cut(s)	235, 320
MboII	GAAGA	3 cut(s)	688, 691, 767
MfeI	CAATTG	1 cut(s)	436
MflI	RGATCY	2 cut(s)	235, 320
MhlI	GDGCHC	2 cut(s)	513, 617
MluCI	AATT	4 cut(s)	298, 364, 436, 531
MlyI	GAGTC	1 cut(s)	687
MnlI	CCTC	3 cut(s)	253, 624, 677
Mph1103I	ATGCAT	1 cut(s)	40
MseI	TTAA	7 cut(s)	159, 230, 276, 305, 486, 530, 680
MslI	CAYNNNNRTG	1 cut(s)	516
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	70, 240
MunI	CAATTG	1 cut(s)	436
MvaI	CCWGG	2 cut(s)	70, 240
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	2 cut(s)	235, 320
NlaIII	CATG	4 cut(s)	42, 317, 376, 738
NlaIV	GGNNCC	3 cut(s)	67, 74, 237
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	40
NspI	RCATGY	3 cut(s)	42, 317, 376
PciI	ACATGT	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	4, 458, 731
PflMI	CCANNNNNTGG	1 cut(s)	572
PkrI	GCNGC	2 cut(s)	223, 226
PleI	GAGTC	1 cut(s)	687
PpsI	GAGTC	1 cut(s)	687
PscI	ACATGT	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	530
PsiI	TTATAA	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	68, 238
PspGI	CCWGG	2 cut(s)	68, 238
PspN4I	GGNNCC	3 cut(s)	67, 74, 237
PspPI	GGNCC	4 cut(s)	73, 202, 563, 581
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	2 cut(s)	235, 320
RsaI	GTAC	3 cut(s)	600, 622, 688
RsaNI	GTAC	3 cut(s)	599, 621, 687
RseI	CAYNNNNRTG	1 cut(s)	516
SacI	GAGCTC	1 cut(s)	617
SaqAI	TTAA	7 cut(s)	159, 230, 276, 305, 486, 530, 680
SatI	GCNGC	2 cut(s)	222, 225
Sau3AI	GATC	2 cut(s)	235, 320
Sau96I	GGNCC	4 cut(s)	73, 202, 563, 581
SchI	GAGTC	1 cut(s)	687
ScrFI	CCNGG	2 cut(s)	70, 240
SduI	GDGCHC	2 cut(s)	513, 617
SfaNI	GCATC	6 cut(s)	208, 344, 353, 412, 422, 769
SfcI	CTRYAG	2 cut(s)	89, 645
SinI	GGWCC	2 cut(s)	73, 581
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
Sse9I	AATT	4 cut(s)	298, 364, 436, 531
SspMI	CTAG	2 cut(s)	185, 293
SstI	GAGCTC	1 cut(s)	617
StyD4I	CCNGG	2 cut(s)	68, 238
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	5 cut(s)	18, 164, 172, 515, 598
TaiI	ACGT	2 cut(s)	408, 743
TasI	AATT	4 cut(s)	298, 364, 436, 531
TfiI	GAWTC	3 cut(s)	4, 458, 731
Tru1I	TTAA	7 cut(s)	159, 230, 276, 305, 486, 530, 680
Tru9I	TTAA	7 cut(s)	159, 230, 276, 305, 486, 530, 680
TscAI	CASTG	2 cut(s)	433, 709
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	2 cut(s)	221, 224
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	6 cut(s)	141, 149, 210, 707, 723, 764
TspGWI	ACGGA	1 cut(s)	625
TspRI	CASTG	2 cut(s)	433, 709
Van91I	CCANNNNNTGG	1 cut(s)	572
VneI	GTGCAC	1 cut(s)	509
VpaK11BI	GGWCC	2 cut(s)	73, 581
VspI	ATTAAT	1 cut(s)	530
XbaI	TCTAGA	1 cut(s)	184
XceI	RCATGY	3 cut(s)	42, 317, 376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	794
XspI	CTAG	2 cut(s)	185, 293
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.