Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

66006550 .. 66020417

Gene Structure 13868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG415200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACGACAGAGCGGAGGAGGAAGATGAAGACATCGGAGATGAGAGAAGAGGTCGTCGAGAGCTTGGTCATCGCTGATCTCAACTCAGACGGAACGATGGCCATGGAGATGGTTTCAACTTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTATGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTATGGGATTTGAAGCTGCTACTTTAAAGGATCCTGGTCTCAATGCTACCGAAGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTGTTAAGGGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGGCTGTAGTAAATTGTTACATGTATTGCAAGTCTATTCAAGTTGCGCAAAACGTGAAGCTTCCCAGAGATGCCACTGGATGCAATTGCAAAGGAAGTTGTGTAGATTCCAAGACCTACCATTGTGCCAAACTTAACGGCTCTGACTTTCCATATGTGCACTGTGATGGTGGCAGATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGGTTGTGGACCTTCTGTGTCAACCGTACTTCTCAGACGGGGCTCAAGTATTGATTTGAGGACGTTGAAAATGGAGGAACACAGACCAGATGATGCTTGTGATGCCTACGATACATATTTTGGTGTAGCAGTATTGTACATCGACATATTTTTGTGGTCTGAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

255

Amino Acids

28.53

Weight (kDa)

5.69

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-SET	PF05033	131 - 203	7.4e-09	Pre-SET motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	426
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	13
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	2 cut(s)	257, 270
AcoI	YGGCCR	1 cut(s)	99
AfaI	GTAC	3 cut(s)	182, 627, 737
AfiI	CCNNNNNNNGG	1 cut(s)	599
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	7 cut(s)	117, 245, 293, 419, 563, 584, 667
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	4 cut(s)	63, 248, 319, 439
AluI	AGCT	4 cut(s)	63, 248, 319, 439
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	1 cut(s)	275
Alw44I	GTGCAC	1 cut(s)	536
AlwI	GGATC	2 cut(s)	257, 270
AoxI	GGCC	3 cut(s)	99, 228, 590
ApaLI	GTGCAC	1 cut(s)	536
ApeKI	GCWGC	1 cut(s)	248
AseI	ATTAAT	1 cut(s)	557
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	3 cut(s)	229, 590, 608
AvaII	GGWCC	1 cut(s)	608
BaeGI	GKGCMC	1 cut(s)	540
BalI	TGGCCA	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	3 cut(s)	91, 103, 539
BceAI	ACGGC	1 cut(s)	532
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	212, 320
BfmI	CTRYAG	1 cut(s)	384
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	608
BmgT120I	GGNCC	3 cut(s)	229, 590, 608
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	6 cut(s)	371, 380, 439, 449, 682, 691
BpiI	GAAGAC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	628
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	102, 567
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse1I	ACTGG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	102, 567
BseGI	GGATG	3 cut(s)	165, 464, 577
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMII	CTCAG	2 cut(s)	99, 646
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	540
BseXI	GCAGC	1 cut(s)	235
BshFI	GGCC	3 cut(s)	101, 230, 592
BsiHKAI	GWGCWC	1 cut(s)	540
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	101, 230, 592
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	540, 644
Bsp1407I	TGTACA	1 cut(s)	735
Bsp143I	GATC	3 cut(s)	76, 262, 347
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	3 cut(s)	101, 230, 592
BspCNI	CTCAG	2 cut(s)	98, 645
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	257, 270
BspTNI	GGTCTC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	13
BsrGI	TGTACA	1 cut(s)	735
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	2 cut(s)	102, 567
BssMI	GATC	3 cut(s)	76, 262, 347
BssT1I	CCWWGG	2 cut(s)	102, 567
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	199, 542, 625
Bst6I	CTCTTC	2 cut(s)	42, 279
BstAUI	TGTACA	1 cut(s)	735
BstDEI	CTNAG	2 cut(s)	85, 632
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	3 cut(s)	165, 464, 577
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	3 cut(s)	79, 265, 350
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	3 cut(s)	76, 262, 347
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 701
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	2 cut(s)	344, 403
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	540
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	2 cut(s)	262, 347
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstYI	RGATCY	2 cut(s)	262, 347
BsuRI	GGCC	3 cut(s)	101, 230, 592
BtgI	CCRYGG	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	55
BtsCI	GGATG	3 cut(s)	165, 464, 577
BtsIMutI	CAGTG	2 cut(s)	453, 538
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	3 cut(s)	229, 590, 608
Csp6I	GTAC	3 cut(s)	181, 626, 736
CviAII	CATG	3 cut(s)	103, 341, 400
CviQI	GTAC	3 cut(s)	181, 626, 736
DdeI	CTNAG	2 cut(s)	85, 632
DpnI	GATC	3 cut(s)	78, 264, 349
DpnII	GATC	3 cut(s)	76, 262, 347
DraI	TTTAAA	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	42, 279
EarI	CTCTTC	2 cut(s)	42, 279
Eco130I	CCWWGG	2 cut(s)	102, 567
Eco24I	GRGCYC	1 cut(s)	644
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	2 cut(s)	102, 567
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	2 cut(s)	102, 567
FaeI	CATG	3 cut(s)	106, 344, 403
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	3 cut(s)	102, 340, 399
FauNDI	CATATG	1 cut(s)	532
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	3 cut(s)	172, 471, 584
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	212, 320
FspI	TGCGCA	1 cut(s)	426
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	101, 230, 592
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	3 cut(s)	106, 344, 403
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HincII	GTYRAC	2 cut(s)	304, 621
HindII	GTYRAC	2 cut(s)	304, 621
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	1 cut(s)	485
HpaI	GTTAAC	1 cut(s)	304
Hpy166II	GTNNAC	5 cut(s)	202, 304, 538, 608, 621
Hpy188I	TCNGA	5 cut(s)	37, 88, 523, 635, 760
Hpy188III	TCNNGA	4 cut(s)	58, 173, 212, 311
Hpy8I	GTNNAC	5 cut(s)	202, 304, 538, 608, 621
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	317, 621
HpyCH4III	ACNGT	3 cut(s)	199, 542, 625
HpyCH4IV	ACGT	2 cut(s)	432, 662
HpyCH4V	TGCA	5 cut(s)	362, 408, 462, 468, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 701
HpyF3I	CTNAG	2 cut(s)	85, 632
HpySE526I	ACGT	2 cut(s)	432, 662
Hsp92II	CATG	3 cut(s)	106, 344, 403
HspAI	GCGC	1 cut(s)	425
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	76, 262, 347
LpnPI	CCDG	9 cut(s)	186, 191, 252, 279, 358, 365, 441, 457, 699
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	6 cut(s)	371, 380, 439, 449, 682, 691
MaeI	CTAG	2 cut(s)	212, 320
MaeII	ACGT	2 cut(s)	432, 662
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	3 cut(s)	78, 264, 349
MbiI	CCGCTC	1 cut(s)	13
MboI	GATC	3 cut(s)	76, 262, 347
MboII	GAAGA	4 cut(s)	34, 40, 59, 296
MfeI	CAATTG	1 cut(s)	463
MflI	RGATCY	2 cut(s)	262, 347
MhlI	GDGCHC	2 cut(s)	540, 644
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	4 cut(s)	325, 391, 463, 558
MluNI	TGGCCA	1 cut(s)	101
MnlI	CCTC	6 cut(s)	9, 12, 43, 280, 651, 667
Mox20I	TGGCCA	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	6 cut(s)	186, 257, 303, 332, 513, 557
MslI	CAYNNNNRTG	2 cut(s)	107, 543
Msp20I	TGGCCA	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	368, 701
NcoI	CCATGG	1 cut(s)	102
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	3 cut(s)	76, 262, 347
NlaIII	CATG	3 cut(s)	106, 344, 403
NlaIV	GGNNCC	1 cut(s)	264
NsbI	TGCGCA	1 cut(s)	426
NspI	RCATGY	2 cut(s)	344, 403
PciI	ACATGT	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	599
PkrI	GCNGC	1 cut(s)	250
PscI	ACATGT	1 cut(s)	399
PshBI	ATTAAT	1 cut(s)	557
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	3 cut(s)	229, 590, 608
PsuI	RGATCY	2 cut(s)	262, 347
RsaI	GTAC	3 cut(s)	182, 627, 737
RsaNI	GTAC	3 cut(s)	181, 626, 736
RseI	CAYNNNNRTG	2 cut(s)	107, 543
SaqAI	TTAA	6 cut(s)	186, 257, 303, 332, 513, 557
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	3 cut(s)	76, 262, 347
Sau96I	GGNCC	3 cut(s)	229, 590, 608
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	2 cut(s)	540, 644
SfaNI	GCATC	6 cut(s)	371, 380, 439, 449, 682, 691
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	2 cut(s)	107, 543
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
Sse9I	AATT	4 cut(s)	325, 391, 463, 558
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	2 cut(s)	212, 320
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	2 cut(s)	102, 567
TaaI	ACNGT	3 cut(s)	199, 542, 625
TaiI	ACGT	2 cut(s)	435, 665
TaqI	TCGA	2 cut(s)	57, 741
TasI	AATT	4 cut(s)	325, 391, 463, 558
TatI	WGTACW	2 cut(s)	180, 735
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	6 cut(s)	186, 257, 303, 332, 513, 557
Tru9I	TTAA	6 cut(s)	186, 257, 303, 332, 513, 557
TscAI	CASTG	2 cut(s)	460, 545
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	4 cut(s)	41, 168, 176, 237
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	2 cut(s)	460, 545
Van91I	CCANNNNNTGG	1 cut(s)	599
VneI	GTGCAC	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	608
VspI	ATTAAT	1 cut(s)	557
XbaI	TCTAGA	1 cut(s)	211
XceI	RCATGY	2 cut(s)	344, 403
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	2 cut(s)	212, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.