Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

55603900 .. 55604769

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG392100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACCGAAGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTGTTAAGGATTCAATTTGTTAATGGACGTGTACCACAATCTATATCAGAAATACGAGGGTTGGTGTGTGAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTTTGCCAGTTGATGTTGTAAATATGGTTATCTTAGCAAGCATAAAGGAGTTAAGGCTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

101

Amino Acids

10.8

Weight (kDa)

4.32

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	3 cut(s)	32, 45, 224
AfaI	GTAC	1 cut(s)	135
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	20, 68, 116
AjiI	CACGTC	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	4 cut(s)	23, 94, 212, 302
AluI	AGCT	4 cut(s)	23, 94, 212, 302
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	3 cut(s)	32, 45, 224
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	23, 26
Asp700I	GAANNNNTTC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	4
AsuNHI	GCTAGC	2 cut(s)	212, 298
BamHI	GGATCC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	10, 13
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	4 cut(s)	95, 191, 213, 299
BisI	GCNGC	2 cut(s)	24, 27
BlsI	GCNGC	2 cut(s)	25, 28
Bme1390I	CCNGG	1 cut(s)	42
BmgBI	CACGTC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	42
BmrI	ACTGGG	1 cut(s)	192
BmtI	GCTAGC	2 cut(s)	216, 302
BmuI	ACTGGG	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	50
Bse1I	ACTGG	3 cut(s)	16, 187, 248
BseBI	CCWGG	1 cut(s)	42
BseNI	ACTGG	3 cut(s)	16, 187, 248
BseXI	GCAGC	2 cut(s)	10, 13
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	37, 229
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	39
BspOI	GCTAGC	2 cut(s)	216, 302
BspPI	GGATC	3 cut(s)	32, 45, 224
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	16, 187, 248
BssMI	GATC	2 cut(s)	37, 229
Bst2UI	CCWGG	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	214, 280, 300
BstDEI	CTNAG	1 cut(s)	274
BstKTI	GATC	2 cut(s)	40, 232
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	2 cut(s)	37, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	10, 13
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	131
Cac8I	GCNNGC	3 cut(s)	214, 280, 300
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	134
CviJI	RGCY	6 cut(s)	5, 23, 94, 212, 298, 302
CviKI_1	RGCY	6 cut(s)	5, 23, 94, 212, 298, 302
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	274
DpnI	GATC	2 cut(s)	39, 231
DpnII	GATC	2 cut(s)	37, 229
DraI	TTTAAA	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	40
FaiI	YATR	4 cut(s)	146, 179, 266, 284
FalI	AAGNNNNNCTT	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	24, 27
Fsp4HI	GCNGC	2 cut(s)	24, 27
FspBI	CTAG	4 cut(s)	95, 191, 213, 299
GluI	GCNGC	2 cut(s)	24, 27
HaeIII	GGCC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	112
HpaI	GTTAAC	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	79, 134
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	86, 191
Hpy8I	GTNNAC	2 cut(s)	79, 134
HpyAV	CCTTC	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	274
HpySE526I	ACGT	1 cut(s)	130
KspAI	GTTAAC	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	37, 229
LpnPI	CCDG	6 cut(s)	27, 54, 168, 222, 249, 261
Lsp1109I	GCAGC	2 cut(s)	10, 13
MaeI	CTAG	4 cut(s)	95, 191, 213, 299
MaeII	ACGT	1 cut(s)	130
MalI	GATC	2 cut(s)	39, 231
MboI	GATC	2 cut(s)	37, 229
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	37
MluCI	AATT	3 cut(s)	100, 116, 217
MnlI	CCTC	4 cut(s)	55, 152, 166, 187
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	6 cut(s)	32, 78, 107, 123, 293, 304
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	2 cut(s)	37, 229
NheI	GCTAGC	2 cut(s)	212, 298
NlaIV	GGNNCC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	25, 28
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	6 cut(s)	32, 78, 107, 123, 293, 304
SatI	GCNGC	2 cut(s)	24, 27
Sau3AI	GATC	2 cut(s)	37, 229
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	7 cut(s)	25, 66, 84, 96, 133, 214, 304
Sse9I	AATT	3 cut(s)	100, 116, 217
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	4 cut(s)	95, 191, 213, 299
StyD4I	CCNGG	1 cut(s)	40
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	225
TasI	AATT	3 cut(s)	100, 116, 217
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	6 cut(s)	32, 78, 107, 123, 293, 304
Tru9I	TTAA	6 cut(s)	32, 78, 107, 123, 293, 304
TseI	GCWGC	2 cut(s)	23, 26
XbaI	TCTAGA	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	4 cut(s)	95, 191, 213, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.