Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

54886211 .. 54895186

Gene Structure 8976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAGCACTTCAGCAGTGGAAAACGACGCACTGGAGAAAGCAGATAGTACCACCGAAGCTCTTTACTTAACTCGAGATACCTACTTTCCGGCGAACCCCGACGACAAAATCGCCATACTAAAATCAGAATCCGATCTCGCTCTCAACCTCCTCAATACCATTCCTCCCGAGCAAAGGAAGCTTCTAACGCAGCGTGCAAGGTACGAATATCTGAGAGGAAAGATATTGGATGTATTGTCGGAGTATAAAAGAGAGGCTGAGGATCATATCTCGAAAGCGGTTAAGCTGAATCCATCTCTTGCGGATGCGTGGCTGTGCTTAGGTAACTGCATTTGGAAGAAGGGAGATCTGTCTTCGGCCAAGAACTGCTTTACTCTTGCACTAAGCAAAGGTCCAAACAAACAGATACTATGTCAACTCTCAATGCTCGAAAGGAAAATGGCCCAAGGTGCCGATAATCAGGCAGAACTTGTTGATGAAAGCATAAAGCATGCCAAGGAAGCTATAACTTTGGATGTCAAGGATGGGAATTCATGGTACAATCTTAGAAATGCATGTCTTACAAGTTTTTGTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTGCTGTAAACAAATATCTAGAAAACTATGAAATGGCCCGTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACAGAAGAGGTTCAAAAGATTGTAAACCTCCTTGACAAGCTAGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGGCTGTGGTAAATTTGAATTCGTCATATAAAAGAGCTACTGTAAATCTTTTATCAGAGGGTCTGAACAAAGCGGTAACATTAGTGAGGAAAGTGTTATTCTTCATTAAGCATGAAAATGTTGCTCCACTGTACTATTTGGCATGCGATCCAGATCAAGTATGCTTTGTTCTGTCAGTCTATGGCATTCAATATGATTCGTTAAGAATCAAAGAAGGAGACCTGATAACATTATTGGATCCCTTATACCGGCAGGTCGAATTTTCTTGGAAAGAAAAGTTTTACCAGTTCAAATCATTTCGTGTGGATTTCAAAGAACAATTGCTTGTGAATGGACAGGCTCTGACTCCTCACCAAGCAGTCCGCACCTCAATTCATGCACAGCATAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

395

Amino Acids

44.63

Weight (kDa)

7.95

Isoelectric Point (pI)

28.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TTC5_OB	PF16669	273 - 387	2.6e-34	Tetratricopeptide repeat protein 5 OB fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1036
AccB1I	GGYRCC	1 cut(s)	449
AciI	CCGC	4 cut(s)	278, 302, 866, 1156
AclWI	GGATC	6 cut(s)	270, 686, 699, 935, 1025, 1038
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	4 cut(s)	529, 805, 811, 1052
AfaI	GTAC	6 cut(s)	49, 203, 539, 611, 664, 926
AfiI	CCNNNNNNNGG	2 cut(s)	174, 1041
AgsI	TTSAA	6 cut(s)	674, 722, 811, 983, 1084, 1105
AjnI	CCWGG	1 cut(s)	694
AluBI	AGCT	7 cut(s)	59, 181, 286, 503, 677, 748, 830
AluI	AGCT	7 cut(s)	59, 181, 286, 503, 677, 748, 830
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	704, 1005
AlwI	GGATC	6 cut(s)	270, 686, 699, 935, 1025, 1038
AlwNI	CAGNNNCTG	1 cut(s)	1135
Ama87I	CYCGRG	2 cut(s)	72, 167
AoxI	GGCC	3 cut(s)	357, 441, 657
ApeKI	GCWGC	4 cut(s)	190, 623, 677, 680
ApoI	RAATTY	4 cut(s)	529, 805, 811, 1052
Asp700I	GAANNNNTTC	1 cut(s)	717
AspS9I	GGNCC	3 cut(s)	392, 442, 658
AsuHPI	GGTGA	1 cut(s)	1136
AvaI	CYCGRG	2 cut(s)	72, 167
AvaII	GGWCC	1 cut(s)	392
BamHI	GGATCC	2 cut(s)	691, 1030
BanI	GGYRCC	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	4 cut(s)	202, 610, 664, 667
BccI	CCATC	2 cut(s)	301, 518
BciT130I	CCWGG	1 cut(s)	696
BcoDI	GTCTC	2 cut(s)	704, 1005
BfaI	CTAG	2 cut(s)	641, 749
BfmI	CTRYAG	1 cut(s)	708
BfuAI	ACCTGC	1 cut(s)	1036
BglII	AGATCT	2 cut(s)	346, 761
BisI	GCNGC	4 cut(s)	191, 624, 678, 681
BlsI	GCNGC	4 cut(s)	192, 625, 679, 682
Bme1390I	CCNGG	1 cut(s)	696
Bme18I	GGWCC	1 cut(s)	392
BmeT110I	CYCGRG	2 cut(s)	72, 167
BmgT120I	GGNCC	3 cut(s)	392, 442, 658
BmiI	GGNNCC	3 cut(s)	451, 693, 1032
BmrFI	CCNGG	1 cut(s)	696
BmsI	GCATC	3 cut(s)	295, 785, 794
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	2 cut(s)	258, 319
BsaBI	GATNNNNATC	1 cut(s)	945
BsaI	GGTCTC	2 cut(s)	704, 1005
BsaJI	CCNNGG	2 cut(s)	445, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 1041
Bse118I	RCCGGY	1 cut(s)	1041
Bse1I	ACTGG	3 cut(s)	36, 670, 1078
Bse8I	GATNNNNATC	1 cut(s)	945
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	445, 495
BseGI	GGATG	5 cut(s)	235, 310, 520, 529, 594
BseJI	GATNNNNATC	1 cut(s)	945
BseLI	CCNNNNNNNGG	2 cut(s)	174, 1041
BseMII	CTCAG	2 cut(s)	203, 249
BseNI	ACTGG	3 cut(s)	36, 670, 1078
BseRI	GAGGAG	2 cut(s)	140, 1131
BseXI	GCAGC	4 cut(s)	202, 610, 664, 667
BshFI	GGCC	3 cut(s)	359, 443, 659
BshNI	GGYRCC	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	72, 167
BsiSI	CCGG	2 cut(s)	89, 1042
BslI	CCNNNNNNNGG	2 cut(s)	174, 1041
BsmAI	GTCTC	2 cut(s)	704, 1005
BsmI	GAATGC	1 cut(s)	978
BsnI	GGCC	3 cut(s)	359, 443, 659
Bso31I	GGTCTC	2 cut(s)	704, 1005
BsoBI	CYCGRG	2 cut(s)	72, 167
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	8 cut(s)	133, 262, 346, 691, 761, 940, 946, 1030
BspACI	CCGC	4 cut(s)	278, 302, 866, 1156
BspANI	GGCC	3 cut(s)	359, 443, 659
BspCNI	CTCAG	2 cut(s)	204, 250
BspLI	GGNNCC	3 cut(s)	451, 693, 1032
BspMI	ACCTGC	1 cut(s)	1036
BspPI	GGATC	6 cut(s)	270, 686, 699, 935, 1025, 1038
BspT107I	GGYRCC	1 cut(s)	449
BspTNI	GGTCTC	2 cut(s)	704, 1005
BsrFI	RCCGGY	1 cut(s)	1041
BsrI	ACTGG	3 cut(s)	36, 670, 1078
BssAI	RCCGGY	1 cut(s)	1041
BssECI	CCNNGG	2 cut(s)	445, 495
BssMI	GATC	8 cut(s)	133, 262, 346, 691, 761, 940, 946, 1030
BssT1I	CCWWGG	2 cut(s)	445, 495
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	3 cut(s)	620, 835, 924
Bst6I	CTCTTC	1 cut(s)	708
BstC8I	GCNNGC	3 cut(s)	195, 492, 937
BstDEI	CTNAG	5 cut(s)	212, 258, 319, 383, 545
BstF5I	GGATG	5 cut(s)	235, 310, 520, 529, 594
BstKTI	GATC	8 cut(s)	136, 265, 349, 694, 764, 943, 949, 1033
BstMAI	GTCTC	2 cut(s)	704, 1005
BstMBI	GATC	8 cut(s)	133, 262, 346, 691, 761, 940, 946, 1030
BstMWI	GCNNNNNNNGC	5 cut(s)	178, 187, 449, 500, 782
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	4 cut(s)	494, 558, 758, 939
BstSCI	CCNGG	1 cut(s)	694
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	4 cut(s)	202, 610, 664, 667
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	4 cut(s)	346, 691, 761, 1030
BstYI	RGATCY	4 cut(s)	346, 691, 761, 1030
BsuRI	GGCC	3 cut(s)	359, 443, 659
BtsCI	GGATG	5 cut(s)	235, 310, 520, 529, 594
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	21, 29, 920
BveI	ACCTGC	1 cut(s)	1036
Cac8I	GCNNGC	3 cut(s)	195, 492, 937
CaiI	CAGNNNCTG	1 cut(s)	1135
Cfr10I	RCCGGY	1 cut(s)	1041
Cfr13I	GGNCC	3 cut(s)	392, 442, 658
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	6 cut(s)	48, 202, 538, 610, 663, 925
CviAII	CATG	8 cut(s)	491, 534, 555, 755, 905, 936, 1169, 1185
CviQI	GTAC	6 cut(s)	48, 202, 538, 610, 663, 925
DdeI	CTNAG	5 cut(s)	212, 258, 319, 383, 545
DpnI	GATC	8 cut(s)	135, 264, 348, 693, 763, 942, 948, 1032
DpnII	GATC	8 cut(s)	133, 262, 346, 691, 761, 940, 946, 1030
DraI	TTTAAA	1 cut(s)	687
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco130I	CCWWGG	2 cut(s)	445, 495
Eco31I	GGTCTC	2 cut(s)	704, 1005
Eco47I	GGWCC	1 cut(s)	392
Eco88I	CYCGRG	2 cut(s)	72, 167
EcoRI	GAATTC	2 cut(s)	529, 811
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	2 cut(s)	445, 495
EcoT22I	ATGCAT	1 cut(s)	556
ErhI	CCWWGG	2 cut(s)	445, 495
FaeI	CATG	8 cut(s)	494, 537, 558, 758, 908, 939, 1172, 1188
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	8 cut(s)	490, 533, 554, 754, 904, 935, 1168, 1184
Fnu4HI	GCNGC	4 cut(s)	191, 624, 678, 681
FokI	GGATG	5 cut(s)	242, 317, 527, 536, 601
Fsp4HI	GCNGC	4 cut(s)	191, 624, 678, 681
FspBI	CTAG	2 cut(s)	641, 749
GluI	GCNGC	4 cut(s)	191, 624, 678, 681
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	359, 443, 659
HapII	CCGG	2 cut(s)	89, 1042
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	8 cut(s)	494, 537, 558, 758, 908, 939, 1172, 1188
HincII	GTYRAC	1 cut(s)	416
HindII	GTYRAC	1 cut(s)	416
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	5 cut(s)	128, 289, 989, 999, 1138
HpaII	CCGG	2 cut(s)	89, 1042
HphI	GGTGA	1 cut(s)	1136
Hpy166II	GTNNAC	3 cut(s)	416, 631, 733
Hpy188I	TCNGA	7 cut(s)	127, 133, 213, 241, 850, 858, 1137
Hpy188III	TCNNGA	6 cut(s)	74, 167, 271, 602, 641, 944
Hpy8I	GTNNAC	3 cut(s)	416, 631, 733
Hpy99I	CGWCG	2 cut(s)	29, 104
HpyAV	CCTTC	2 cut(s)	334, 1001
HpyCH4III	ACNGT	3 cut(s)	620, 835, 924
HpyCH4V	TGCA	6 cut(s)	197, 330, 380, 554, 776, 1172
HpyF10VI	GCNNNNNNNGC	5 cut(s)	178, 187, 449, 500, 782
HpyF3I	CTNAG	5 cut(s)	212, 258, 319, 383, 545
Hsp92II	CATG	8 cut(s)	494, 537, 558, 758, 908, 939, 1172, 1188
Kzo9I	GATC	8 cut(s)	133, 262, 346, 691, 761, 940, 946, 1030
LmnI	GCTCC	1 cut(s)	922
Lsp1109I	GCAGC	4 cut(s)	202, 610, 664, 667
LweI	GCATC	3 cut(s)	295, 785, 794
MaeI	CTAG	2 cut(s)	641, 749
MaeIII	GTNAC	2 cut(s)	323, 868
MalI	GATC	8 cut(s)	135, 264, 348, 693, 763, 942, 948, 1032
MboI	GATC	8 cut(s)	133, 262, 346, 691, 761, 940, 946, 1030
MboII	GAAGA	4 cut(s)	345, 349, 725, 886
MfeI	CAATTG	1 cut(s)	1112
MflI	RGATCY	4 cut(s)	346, 691, 761, 1030
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	6 cut(s)	529, 805, 811, 1052, 1112, 1164
MlyI	GAGTC	1 cut(s)	1132
MmeI	TCCRAC	1 cut(s)	219
Mph1103I	ATGCAT	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	717
MseI	TTAA	6 cut(s)	68, 282, 615, 686, 900, 995
MslI	CAYNNNNRTG	1 cut(s)	909
MspI	CCGG	2 cut(s)	89, 1042
MspR9I	CCNGG	1 cut(s)	696
MunI	CAATTG	1 cut(s)	1112
Mva1269I	GAATGC	1 cut(s)	978
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	5 cut(s)	178, 187, 449, 500, 782
NdeII	GATC	8 cut(s)	133, 262, 346, 691, 761, 940, 946, 1030
NlaIII	CATG	8 cut(s)	494, 537, 558, 758, 908, 939, 1172, 1188
NlaIV	GGNNCC	3 cut(s)	451, 693, 1032
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	4 cut(s)	494, 558, 758, 939
PaeI	GCATGC	2 cut(s)	494, 939
PaeR7I	CTCGAG	1 cut(s)	72
PctI	GAATGC	1 cut(s)	978
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	4 cut(s)	128, 289, 989, 999
PkrI	GCNGC	4 cut(s)	192, 625, 679, 682
PleI	GAGTC	1 cut(s)	1132
PpsI	GAGTC	1 cut(s)	1132
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	3 cut(s)	451, 693, 1032
PspPI	GGNCC	3 cut(s)	392, 442, 658
PsrI	GAACNNNNNNTAC	2 cut(s)	945, 977
PstNI	CAGNNNCTG	1 cut(s)	1135
PsuI	RGATCY	4 cut(s)	346, 691, 761, 1030
RsaI	GTAC	6 cut(s)	49, 203, 539, 611, 664, 926
RsaNI	GTAC	6 cut(s)	48, 202, 538, 610, 663, 925
RseI	CAYNNNNRTG	1 cut(s)	909
SaqAI	TTAA	6 cut(s)	68, 282, 615, 686, 900, 995
SatI	GCNGC	4 cut(s)	191, 624, 678, 681
Sau3AI	GATC	8 cut(s)	133, 262, 346, 691, 761, 940, 946, 1030
Sau96I	GGNCC	3 cut(s)	392, 442, 658
SchI	GAGTC	1 cut(s)	1132
ScrFI	CCNGG	1 cut(s)	696
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	295, 785, 794
SfcI	CTRYAG	1 cut(s)	708
Sfr274I	CTCGAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	909
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
SphI	GCATGC	2 cut(s)	494, 939
Sse9I	AATT	6 cut(s)	529, 805, 811, 1052, 1112, 1164
SsiI	CCGC	4 cut(s)	278, 302, 866, 1156
SspMI	CTAG	2 cut(s)	641, 749
StyD4I	CCNGG	1 cut(s)	694
StyI	CCWWGG	2 cut(s)	445, 495
TaaI	ACNGT	3 cut(s)	620, 835, 924
TaqI	TCGA	4 cut(s)	73, 272, 429, 1050
TasI	AATT	6 cut(s)	529, 805, 811, 1052, 1112, 1164
TatI	WGTACW	2 cut(s)	609, 924
TfiI	GAWTC	4 cut(s)	128, 289, 989, 999
Tru1I	TTAA	6 cut(s)	68, 282, 615, 686, 900, 995
Tru9I	TTAA	6 cut(s)	68, 282, 615, 686, 900, 995
TscAI	CASTG	3 cut(s)	21, 36, 927
TseI	GCWGC	4 cut(s)	190, 623, 677, 680
TspDTI	ATGAA	8 cut(s)	492, 522, 597, 605, 666, 886, 921, 1157
TspRI	CASTG	3 cut(s)	21, 36, 927
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	4 cut(s)	529, 805, 811, 1052
XbaI	TCTAGA	1 cut(s)	640
XceI	RCATGY	4 cut(s)	494, 558, 758, 939
XhoI	CTCGAG	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	2 cut(s)	641, 749
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.