Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

41830179 .. 41855397

Gene Structure 25219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG324700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAGGATTTGTATTCCAAAAGATGAGCAGACAGTGAGATTGGATTCTGTTGATGGTCGTCTCCTCTTCAAAGAAGCTGAACGAGTTGATGGCGAGGGATGTTGGTTTGAGGACCCTGACGTTCTCGTTCTGGATAAGAGCTCGAGGGAGAAGCCTTTTCTGTATGAAATTGTGGCAAATGGGCGTAATGGTATGGAAGCCTTTTCATCATCCGTGTTGCGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

75

Amino Acids

8.58

Weight (kDa)

4.73

Isoelectric Point (pI)

22.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	2 cut(s)	77, 141
AluI	AGCT	2 cut(s)	77, 141
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	143
BccI	CCATC	2 cut(s)	47, 83
BcoDI	GTCTC	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	114
BseGI	GGATG	2 cut(s)	104, 209
BseRI	GAGGAG	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	104, 209
BstHHI	GCGC	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	104, 209
BtsIMutI	CAGTG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	112
CviJI	RGCY	4 cut(s)	77, 141, 154, 200
CviKI_1	RGCY	4 cut(s)	77, 141, 154, 200
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	65
FaiI	YATR	2 cut(s)	165, 194
FokI	GGATG	2 cut(s)	111, 196
FriOI	GRGCYC	1 cut(s)	143
FspI	TGCGCA	1 cut(s)	221
GlaI	GCGC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	222
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	120
HspAI	GCGC	1 cut(s)	220
LpnPI	CCDG	2 cut(s)	116, 129
MaeII	ACGT	1 cut(s)	120
MboII	GAAGA	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	4 cut(s)	74, 88, 103, 138
NlaIV	GGNNCC	1 cut(s)	114
NsbI	TGCGCA	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	112
PspPPI	RGGWCCY	1 cut(s)	112
PspXI	VCTCGAGB	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	143
Sau96I	GGNCC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	3 cut(s)	79, 123, 143
Sfr274I	CTCGAG	1 cut(s)	142
SgeI	CNNG	7 cut(s)	95, 106, 128, 137, 143, 154, 156
SinI	GGWCC	1 cut(s)	112
SlaI	CTCGAG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	143
TasI	AATT	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	44
TscAI	CASTG	1 cut(s)	39
TspDTI	ATGAA	2 cut(s)	180, 195
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	112
XhoI	CTCGAG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.