Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

49777473 .. 49781900

Gene Structure 4428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG333700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGCACTCCAGCAGTGGAAAACGACGCACTGGAGAAAGCCGGTAGTGCCACCGAAGCTCTTTACTTAACTCGAGATACCTACTTTCCGGCGAACCCCGACGACAAAATCGCCAGACTAAAATCAGAATCCGATCTCGCTCTCAACCTCCTCGATTCCATTCCTCCCGAGCAAAGGAAGCTTCTAACGCAGCGTGCAAGGTACGAATATCTGAGAGGGAAGATATTGGATGTATTGCCGGAGTATAAAAGAGAGGCTGAGGATCATCTCTCGAAAGCGGTTAAGTTGAATCCATCTCTTGCGGATGCGTGGCTGTGCTTAGGTAACTGCATTTGGAAGAAGGGAGATCTGTCTTCGGCCAACAACTGCTTTACTCTTGCACTAAGCAAAGGTCCAAACAAACAGATACTATGTCAACTCTCAATGCTCGAAAGGAAAATGGCCCAAGGTGCCGATAATCAGGCAGAACTTGTTGATGAAAGCATAAAACATGCCAAGGAAGCTATAACTTTGGATGTCAAGGATGGGAATTCATGGTACAATCTTGGAAATGCATGTCTTACAAGTTTTTTTGTGACCGGAGCCTGGGACCACGCCAAACTTCTGCAGTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACCGAAGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTGTTAAGGGTAATGCATTTTTCATTCGTAAATGTGGTATCTTGGGGTCTTGAGTATGTGTTTCCCCCAATTTTAGTAGTACCATGGTTTACTAGTTGCAAGCCACCATTTTGCGGACTGCATTTGATGAGATTGAGAAACTGGAGACTAAAACAAGGACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

326

Amino Acids

36.82

Weight (kDa)

6.34

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	449
AciI	CCGC	3 cut(s)	278, 302, 930
AclWI	GGATC	3 cut(s)	270, 746, 759
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	529
AfaI	GTAC	4 cut(s)	203, 539, 671, 897
AfiI	CCNNNNNNNGG	3 cut(s)	174, 585, 929
AgsI	TTSAA	3 cut(s)	289, 734, 782
AhlI	ACTAGT	1 cut(s)	908
AjnI	CCWGG	2 cut(s)	584, 754
AluBI	AGCT	5 cut(s)	59, 181, 503, 737, 808
AluI	AGCT	5 cut(s)	59, 181, 503, 737, 808
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	615, 764, 955
AlwI	GGATC	3 cut(s)	270, 746, 759
Ama87I	CYCGRG	2 cut(s)	72, 167
AoxI	GGCC	3 cut(s)	357, 441, 717
ApeKI	GCWGC	3 cut(s)	190, 737, 740
ApoI	RAATTY	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	777
AspS9I	GGNCC	4 cut(s)	392, 442, 589, 718
AvaI	CYCGRG	2 cut(s)	72, 167
AvaII	GGWCC	2 cut(s)	392, 589
BamHI	GGATCC	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	202, 724, 727
BccI	CCATC	2 cut(s)	301, 518
BciT130I	CCWGG	2 cut(s)	586, 756
BcoDI	GTCTC	3 cut(s)	615, 764, 955
BcuI	ACTAGT	1 cut(s)	908
BfaI	CTAG	3 cut(s)	701, 809, 909
BfmI	CTRYAG	1 cut(s)	605
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	3 cut(s)	191, 738, 741
BlsI	GCNGC	3 cut(s)	192, 739, 742
Bme1390I	CCNGG	2 cut(s)	586, 756
Bme18I	GGWCC	2 cut(s)	392, 589
BmeT110I	CYCGRG	2 cut(s)	72, 167
BmgT120I	GGNCC	4 cut(s)	392, 442, 589, 718
BmiI	GGNNCC	4 cut(s)	451, 583, 590, 753
BmrFI	CCNGG	2 cut(s)	586, 756
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	2 cut(s)	53, 979
Bpu10I	CCTNAGC	2 cut(s)	258, 319
BpuEI	CTTGAG	1 cut(s)	887
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	4 cut(s)	445, 495, 585, 899
BsaWI	WCCGGW	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 585, 929
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	3 cut(s)	36, 730, 962
BseBI	CCWGG	2 cut(s)	586, 756
BseDI	CCNNGG	4 cut(s)	445, 495, 585, 899
BseGI	GGATG	5 cut(s)	235, 310, 520, 529, 654
BseLI	CCNNNNNNNGG	3 cut(s)	174, 585, 929
BseMII	CTCAG	2 cut(s)	203, 249
BseNI	ACTGG	3 cut(s)	36, 730, 962
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	202, 724, 727
BshFI	GGCC	3 cut(s)	359, 443, 719
BshNI	GGYRCC	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	72, 167
BsiSI	CCGG	4 cut(s)	42, 89, 239, 579
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	3 cut(s)	174, 585, 929
BsmAI	GTCTC	3 cut(s)	615, 764, 955
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	3 cut(s)	359, 443, 719
Bso31I	GGTCTC	1 cut(s)	764
BsoBI	CYCGRG	2 cut(s)	72, 167
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	133, 262, 346, 751
Bsp19I	CCATGG	1 cut(s)	899
BspACI	CCGC	3 cut(s)	278, 302, 930
BspANI	GGCC	3 cut(s)	359, 443, 719
BspCNI	CTCAG	2 cut(s)	204, 250
BspLI	GGNNCC	4 cut(s)	451, 583, 590, 753
BspMAI	CTGCAG	1 cut(s)	609
BspPI	GGATC	3 cut(s)	270, 746, 759
BspT107I	GGYRCC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	764
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	3 cut(s)	36, 730, 962
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	445, 495, 585, 899
BssMI	GATC	4 cut(s)	133, 262, 346, 751
BssT1I	CCWWGG	3 cut(s)	445, 495, 899
Bst2UI	CCWGG	2 cut(s)	586, 756
Bst4CI	ACNGT	2 cut(s)	680, 688
Bst6I	CTCTTC	1 cut(s)	768
BstC8I	GCNNGC	2 cut(s)	195, 917
BstDEI	CTNAG	4 cut(s)	212, 258, 319, 383
BstDSI	CCRYGG	1 cut(s)	899
BstF5I	GGATG	5 cut(s)	235, 310, 520, 529, 654
BstKTI	GATC	4 cut(s)	136, 265, 349, 754
BstMAI	GTCTC	3 cut(s)	615, 764, 955
BstMBI	GATC	4 cut(s)	133, 262, 346, 751
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 56, 178, 187, 449, 500
BstNI	CCWGG	2 cut(s)	586, 756
BstNSI	RCATGY	2 cut(s)	494, 558
BstSCI	CCNGG	2 cut(s)	584, 754
BstSFI	CTRYAG	1 cut(s)	605
BstV1I	GCAGC	3 cut(s)	202, 724, 727
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	2 cut(s)	346, 751
BstYI	RGATCY	2 cut(s)	346, 751
BsuRI	GGCC	3 cut(s)	359, 443, 719
BtgI	CCRYGG	1 cut(s)	899
BtsCI	GGATG	5 cut(s)	235, 310, 520, 529, 654
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 29
Cac8I	GCNNGC	2 cut(s)	195, 917
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	4 cut(s)	392, 442, 589, 718
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	4 cut(s)	202, 538, 670, 896
CviAII	CATG	4 cut(s)	491, 534, 555, 900
CviQI	GTAC	4 cut(s)	202, 538, 670, 896
DdeI	CTNAG	4 cut(s)	212, 258, 319, 383
DpnI	GATC	4 cut(s)	135, 264, 348, 753
DpnII	GATC	4 cut(s)	133, 262, 346, 751
DraI	TTTAAA	1 cut(s)	747
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
Eco130I	CCWWGG	3 cut(s)	445, 495, 899
Eco31I	GGTCTC	1 cut(s)	764
Eco47I	GGWCC	2 cut(s)	392, 589
Eco88I	CYCGRG	2 cut(s)	72, 167
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	2 cut(s)	584, 754
EcoT14I	CCWWGG	3 cut(s)	445, 495, 899
EcoT22I	ATGCAT	2 cut(s)	556, 834
ErhI	CCWWGG	3 cut(s)	445, 495, 899
FaeI	CATG	4 cut(s)	494, 537, 558, 903
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	4 cut(s)	490, 533, 554, 899
Fnu4HI	GCNGC	3 cut(s)	191, 738, 741
FokI	GGATG	5 cut(s)	242, 317, 527, 536, 661
Fsp4HI	GCNGC	3 cut(s)	191, 738, 741
FspBI	CTAG	3 cut(s)	701, 809, 909
GluI	GCNGC	3 cut(s)	191, 738, 741
GsuI	CTGGAG	2 cut(s)	53, 979
HaeIII	GGCC	3 cut(s)	359, 443, 719
HapII	CCGG	4 cut(s)	42, 89, 239, 579
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	494, 537, 558, 903
HincII	GTYRAC	2 cut(s)	416, 793
HindII	GTYRAC	2 cut(s)	416, 793
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	3 cut(s)	128, 155, 289
HpaI	GTTAAC	1 cut(s)	793
HpaII	CCGG	4 cut(s)	42, 89, 239, 579
Hpy166II	GTNNAC	4 cut(s)	416, 691, 793, 906
Hpy188I	TCNGA	3 cut(s)	127, 133, 213
Hpy188III	TCNNGA	7 cut(s)	74, 167, 271, 662, 701, 800, 866
Hpy8I	GTNNAC	4 cut(s)	416, 691, 793, 906
Hpy99I	CGWCG	2 cut(s)	29, 104
HpyAV	CCTTC	2 cut(s)	334, 806
HpyCH4III	ACNGT	2 cut(s)	680, 688
HpyCH4V	TGCA	8 cut(s)	197, 330, 380, 554, 607, 832, 915, 937
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 56, 178, 187, 449, 500
HpyF3I	CTNAG	4 cut(s)	212, 258, 319, 383
Hsp92II	CATG	4 cut(s)	494, 537, 558, 903
KspAI	GTTAAC	1 cut(s)	793
Kzo9I	GATC	4 cut(s)	133, 262, 346, 751
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	3 cut(s)	202, 724, 727
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	3 cut(s)	701, 809, 909
MaeIII	GTNAC	2 cut(s)	323, 574
MalI	GATC	4 cut(s)	135, 264, 348, 753
MboI	GATC	4 cut(s)	133, 262, 346, 751
MboII	GAAGA	4 cut(s)	232, 345, 349, 785
MflI	RGATCY	2 cut(s)	346, 751
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	529, 814, 885
MnlI	CCTC	7 cut(s)	158, 161, 174, 209, 247, 253, 769
Mph1103I	ATGCAT	2 cut(s)	556, 834
MroXI	GAANNNNTTC	1 cut(s)	777
MseI	TTAA	6 cut(s)	68, 282, 675, 746, 792, 821
MspI	CCGG	4 cut(s)	42, 89, 239, 579
MspR9I	CCNGG	2 cut(s)	586, 756
MvaI	CCWGG	2 cut(s)	586, 756
MwoI	GCNNNNNNNGC	6 cut(s)	47, 56, 178, 187, 449, 500
NcoI	CCATGG	1 cut(s)	899
NdeII	GATC	4 cut(s)	133, 262, 346, 751
NlaIII	CATG	4 cut(s)	494, 537, 558, 903
NlaIV	GGNNCC	4 cut(s)	451, 583, 590, 753
NmuCI	GTSAC	1 cut(s)	574
NsiI	ATGCAT	2 cut(s)	556, 834
NspI	RCATGY	2 cut(s)	494, 558
PaeR7I	CTCGAG	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	3 cut(s)	128, 155, 289
PkrI	GCNGC	3 cut(s)	192, 739, 742
Psp6I	CCWGG	2 cut(s)	584, 754
PspGI	CCWGG	2 cut(s)	584, 754
PspN4I	GGNNCC	4 cut(s)	451, 583, 590, 753
PspPI	GGNCC	4 cut(s)	392, 442, 589, 718
PstI	CTGCAG	1 cut(s)	609
PsuI	RGATCY	2 cut(s)	346, 751
RsaI	GTAC	4 cut(s)	203, 539, 671, 897
RsaNI	GTAC	4 cut(s)	202, 538, 670, 896
SaqAI	TTAA	6 cut(s)	68, 282, 675, 746, 792, 821
SatI	GCNGC	3 cut(s)	191, 738, 741
Sau3AI	GATC	4 cut(s)	133, 262, 346, 751
Sau96I	GGNCC	4 cut(s)	392, 442, 589, 718
ScrFI	CCNGG	2 cut(s)	586, 756
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	605
Sfr274I	CTCGAG	1 cut(s)	72
SinI	GGWCC	2 cut(s)	392, 589
SlaI	CTCGAG	1 cut(s)	72
SmlI	CTYRAG	2 cut(s)	72, 866
SmoI	CTYRAG	2 cut(s)	72, 866
SpeI	ACTAGT	1 cut(s)	908
Sse9I	AATT	3 cut(s)	529, 814, 885
SsiI	CCGC	3 cut(s)	278, 302, 930
SspMI	CTAG	3 cut(s)	701, 809, 909
StyD4I	CCNGG	2 cut(s)	584, 754
StyI	CCWWGG	3 cut(s)	445, 495, 899
TaaI	ACNGT	2 cut(s)	680, 688
TaqI	TCGA	4 cut(s)	73, 153, 272, 429
TasI	AATT	3 cut(s)	529, 814, 885
TatI	WGTACW	1 cut(s)	669
TfiI	GAWTC	3 cut(s)	128, 155, 289
Tru1I	TTAA	6 cut(s)	68, 282, 675, 746, 792, 821
Tru9I	TTAA	6 cut(s)	68, 282, 675, 746, 792, 821
TscAI	CASTG	2 cut(s)	21, 36
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	3 cut(s)	190, 737, 740
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	6 cut(s)	492, 522, 657, 665, 726, 828
TspRI	CASTG	2 cut(s)	21, 36
VpaK11BI	GGWCC	2 cut(s)	392, 589
XapI	RAATTY	1 cut(s)	529
XbaI	TCTAGA	1 cut(s)	700
XceI	RCATGY	2 cut(s)	494, 558
XhoI	CTCGAG	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	3 cut(s)	701, 809, 909
Zsp2I	ATGCAT	2 cut(s)	556, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.