Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001535.1

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

9536 .. 11496

Gene Structure 1961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001535.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggcctttactggatttgaagctgctgctttaaaggatcctggtctcaatgctaccgaagaggttcaaaagattgttaaccttcttgacaagctagataatttgttaaggttgcaagccaccattttgcagactgcatttgatgagattgagaaactggagactaaaacaaggacactaagaacttgttacatgtattgcaagtctattcaagttgcgcaaaacgtgaagcttcccagagatgccactggatgcaattgcaaaggaagttgtgtagattccaagacctgccaatgtgccaaacttaacggctctgactttccatatgtgcaccgtgatggtggcagtctagagaagcatattgtggaggcaacttggcaaggccgggaaggtggcttcccggcgacagatttgcgacttccagataccgtagcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

145

Amino Acids

15.99

Weight (kDa)

6.11

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	296
AclWI	GGATC	2 cut(s)	32, 45
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	3 cut(s)	20, 68, 212
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	3 cut(s)	23, 94, 232
AluI	AGCT	3 cut(s)	23, 94, 232
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	50, 155
Alw44I	GTGCAC	1 cut(s)	329
AlwI	GGATC	2 cut(s)	32, 45
AoxI	GGCC	2 cut(s)	3, 382
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	23, 26
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	220
AsuC2I	CCSGG	2 cut(s)	386, 401
BaeGI	GKGCMC	1 cut(s)	333
BamHI	GGATCC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	10, 13
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	325
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	1 cut(s)	42
BcnI	CCSGG	2 cut(s)	386, 401
BcoDI	GTCTC	2 cut(s)	50, 155
BfaI	CTAG	2 cut(s)	95, 350
BfuAI	ACCTGC	1 cut(s)	296
BisI	GCNGC	2 cut(s)	24, 27
BlsI	GCNGC	2 cut(s)	25, 28
Bme1390I	CCNGG	3 cut(s)	42, 386, 401
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	3 cut(s)	42, 386, 401
BmsI	GCATC	2 cut(s)	232, 242
BpmI	CTGGAG	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	386, 401
BsaI	GGTCTC	1 cut(s)	50
Bse1I	ACTGG	3 cut(s)	16, 162, 253
BseBI	CCWGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	257
BseNI	ACTGG	3 cut(s)	16, 162, 253
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	10, 13
BshFI	GGCC	2 cut(s)	5, 384
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	385, 401
BsmAI	GTCTC	2 cut(s)	50, 155
BsnI	GGCC	2 cut(s)	5, 384
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	5, 384
BspLI	GGNNCC	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	2 cut(s)	32, 45
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	16, 162, 253
BssMI	GATC	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	335, 430
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	2 cut(s)	50, 155
BstMBI	GATC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	3 cut(s)	40, 384, 399
BstSLI	GKGCMC	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	10, 13
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	5, 384
BtsCI	GGATG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	117
CfoI	GCGC	1 cut(s)	220
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	8 cut(s)	5, 23, 94, 119, 232, 312, 384, 396
CviKI_1	RGCY	8 cut(s)	5, 23, 94, 119, 232, 312, 384, 396
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
DraI	TTTAAA	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	40
FaeI	CATG	1 cut(s)	196
FaiI	YATR	4 cut(s)	194, 325, 327, 360
FatI	CATG	1 cut(s)	192
FauNDI	CATATG	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	24, 27
FokI	GGATG	1 cut(s)	264
Fsp4HI	GCNGC	2 cut(s)	24, 27
FspBI	CTAG	2 cut(s)	95, 350
FspI	TGCGCA	1 cut(s)	219
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	2 cut(s)	24, 27
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	5, 384
HapII	CCGG	2 cut(s)	385, 401
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	1 cut(s)	278
HpaI	GTTAAC	1 cut(s)	79
HpaII	CCGG	2 cut(s)	385, 401
Hpy166II	GTNNAC	2 cut(s)	79, 331
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	3 cut(s)	86, 350, 422
Hpy8I	GTNNAC	2 cut(s)	79, 331
HpyAV	CCTTC	2 cut(s)	92, 383
HpyCH4III	ACNGT	2 cut(s)	335, 430
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	7 cut(s)	115, 130, 137, 201, 255, 261, 331
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	1 cut(s)	218
KspAI	GTTAAC	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	8 cut(s)	27, 54, 143, 234, 250, 301, 398, 414
Lsp1109I	GCAGC	2 cut(s)	10, 13
LweI	GCATC	2 cut(s)	232, 242
MaeI	CTAG	2 cut(s)	95, 350
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	1 cut(s)	71
MfeI	CAATTG	1 cut(s)	256
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	2 cut(s)	100, 256
MnlI	CCTC	2 cut(s)	55, 361
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	4 cut(s)	32, 78, 107, 306
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	2 cut(s)	385, 401
MspR9I	CCNGG	3 cut(s)	42, 386, 401
MunI	CAATTG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	42
NciI	CCSGG	2 cut(s)	386, 401
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	39
NsbI	TGCGCA	1 cut(s)	219
NspI	RCATGY	1 cut(s)	196
PciI	ACATGT	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	25, 28
PscI	ACATGT	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	4 cut(s)	32, 78, 107, 306
SatI	GCNGC	2 cut(s)	24, 27
Sau3AI	GATC	1 cut(s)	37
ScrFI	CCNGG	3 cut(s)	42, 386, 401
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	9 cut(s)	25, 66, 84, 96, 113, 228, 234, 290, 394
SfaNI	GCATC	2 cut(s)	232, 242
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	2 cut(s)	100, 256
SspMI	CTAG	2 cut(s)	95, 350
StyD4I	CCNGG	3 cut(s)	40, 384, 399
TaaI	ACNGT	2 cut(s)	335, 430
TaiI	ACGT	1 cut(s)	228
TasI	AATT	2 cut(s)	100, 256
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	4 cut(s)	32, 78, 107, 306
Tru9I	TTAA	4 cut(s)	32, 78, 107, 306
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	2 cut(s)	23, 26
TspRI	CASTG	1 cut(s)	253
VneI	GTGCAC	1 cut(s)	329
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	2 cut(s)	95, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.