Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

58386002 .. 58394151

Gene Structure 8150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG309600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGATTCAACCTTTACTGTCAGACAATCTTGGAAATGCATGTCTTACAAGTTTTTTTGTCACCGGAGCCTGGGACCACGCCAAACTTCTGCAGTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCAAGAGGTCTTGAGTATGTGTTTCCAAAGTGGTTTCTAGGATCAAGGGGCCTTGGGCTATCATCTATTGGCAGGTTGGTGTGCGAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCCATTTGGTCGATGATCCGCCTGTTGCTTTGTCAGTTGATGTTGTAAATATGACAGTGAGATTGGATTCTGTTGATGGTCGTCTCCTCCTCAAAGAAGCTGAACGAGTTGATGGCGAGGGATGTTGGTTTCAGGACCCTGGCGTTCTCGATCTGGATAAGAGCTCCAGGGAGAAGCCTTTTCTGTATGAAATTGTGGCAACTGGGCGTAATGGTATGGAAGCCTTTTCATCATCTGTGTTGCTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

208

Amino Acids

22.84

Weight (kDa)

4.62

Isoelectric Point (pI)

24.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	312
AciI	CCGC	1 cut(s)	395
AclWI	GGATC	4 cut(s)	230, 243, 298, 386
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	8, 218
AjnI	CCWGG	4 cut(s)	68, 238, 514, 542
AluBI	AGCT	4 cut(s)	221, 374, 476, 540
AluI	AGCT	4 cut(s)	221, 374, 476, 540
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	3 cut(s)	99, 248, 464
AlwI	GGATC	4 cut(s)	230, 243, 298, 386
AoxI	GGCC	2 cut(s)	201, 298
ApeKI	GCWGC	2 cut(s)	221, 224
AspS9I	GGNCC	4 cut(s)	73, 202, 298, 511
AsuHPI	GGTGA	1 cut(s)	52
AsuNHI	GCTAGC	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	73, 511
BamHI	GGATCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	2 cut(s)	208, 211
BccI	CCATC	2 cut(s)	446, 482
BciT130I	CCWGG	4 cut(s)	70, 240, 516, 544
BcoDI	GTCTC	3 cut(s)	99, 248, 464
BfaI	CTAG	4 cut(s)	185, 287, 353, 375
BfmI	CTRYAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	312
BisI	GCNGC	2 cut(s)	222, 225
BlsI	GCNGC	2 cut(s)	223, 226
Bme1390I	CCNGG	4 cut(s)	70, 240, 516, 544
Bme18I	GGWCC	2 cut(s)	73, 511
BmgT120I	GGNCC	4 cut(s)	73, 202, 298, 511
BmiI	GGNNCC	5 cut(s)	67, 74, 237, 299, 513
BmrFI	CCNGG	4 cut(s)	70, 240, 516, 544
BmrI	ACTGGG	2 cut(s)	354, 588
BmtI	GCTAGC	1 cut(s)	378
BmuI	ACTGGG	2 cut(s)	354, 588
BpmI	CTGGAG	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	4 cut(s)	69, 301, 514, 543
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	3 cut(s)	214, 349, 583
BseBI	CCWGG	4 cut(s)	70, 240, 516, 544
BseDI	CCNNGG	4 cut(s)	69, 301, 514, 543
BseGI	GGATG	2 cut(s)	138, 503
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseNI	ACTGG	3 cut(s)	214, 349, 583
BseRI	GAGGAG	2 cut(s)	452, 455
BseXI	GCAGC	2 cut(s)	208, 211
BshFI	GGCC	2 cut(s)	203, 300
BsiHKAI	GWGCWC	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	3 cut(s)	99, 248, 464
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	203, 300
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	4 cut(s)	235, 290, 391, 526
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	2 cut(s)	203, 300
BspLI	GGNNCC	5 cut(s)	67, 74, 237, 299, 513
BspMAI	CTGCAG	1 cut(s)	93
BspMI	ACCTGC	1 cut(s)	312
BspOI	GCTAGC	1 cut(s)	378
BspPI	GGATC	4 cut(s)	230, 243, 298, 386
BspTNI	GGTCTC	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	214, 349, 583
BssECI	CCNNGG	4 cut(s)	69, 301, 514, 543
BssMI	GATC	4 cut(s)	235, 290, 391, 526
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	4 cut(s)	70, 240, 516, 544
Bst4CI	ACNGT	4 cut(s)	18, 164, 172, 433
BstC8I	GCNNGC	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	138, 503
BstKTI	GATC	4 cut(s)	238, 293, 394, 529
BstMAI	GTCTC	3 cut(s)	99, 248, 464
BstMBI	GATC	4 cut(s)	235, 290, 391, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	4 cut(s)	70, 240, 516, 544
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	4 cut(s)	68, 238, 514, 542
BstSFI	CTRYAG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	208, 211
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	203, 300
BtsCI	GGATG	2 cut(s)	138, 503
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	376
Cfr13I	GGNCC	4 cut(s)	73, 202, 298, 511
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	39
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	4 cut(s)	237, 292, 393, 528
DpnII	GATC	4 cut(s)	235, 290, 391, 526
DraI	TTTAAA	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	384
Ecl136II	GAGCTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	73, 511
Eco53kI	GAGCTC	1 cut(s)	540
EcoICRI	GAGCTC	1 cut(s)	540
EcoO109I	RGGNCCY	2 cut(s)	298, 511
EcoRII	CCWGG	4 cut(s)	68, 238, 514, 542
EcoT14I	CCWWGG	1 cut(s)	301
EcoT22I	ATGCAT	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	1 cut(s)	42
FaiI	YATR	8 cut(s)	40, 106, 195, 267, 341, 428, 564, 593
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	1 cut(s)	38
Fnu4HI	GCNGC	2 cut(s)	222, 225
FokI	GGATG	2 cut(s)	145, 510
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	2 cut(s)	222, 225
FspBI	CTAG	4 cut(s)	185, 287, 353, 375
GluI	GCNGC	2 cut(s)	222, 225
GsuI	CTGGAG	1 cut(s)	526
HaeIII	GGCC	2 cut(s)	203, 300
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	1 cut(s)	42
HinfI	GANTC	2 cut(s)	4, 443
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	22, 626
Hpy188III	TCNNGA	7 cut(s)	146, 185, 260, 353, 509, 524, 530
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4III	ACNGT	4 cut(s)	18, 164, 172, 433
HpyCH4V	TGCA	3 cut(s)	38, 91, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
Hsp92II	CATG	1 cut(s)	42
Kzo9I	GATC	4 cut(s)	235, 290, 391, 526
LmnI	GCTCC	2 cut(s)	65, 545
Lsp1109I	GCAGC	2 cut(s)	208, 211
MaeI	CTAG	4 cut(s)	185, 287, 353, 375
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	4 cut(s)	237, 292, 393, 528
MboI	GATC	4 cut(s)	235, 290, 391, 526
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	1 cut(s)	567
MnlI	CCTC	6 cut(s)	248, 328, 349, 473, 476, 487
Mph1103I	ATGCAT	1 cut(s)	40
MseI	TTAA	2 cut(s)	159, 230
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	4 cut(s)	70, 240, 516, 544
MvaI	CCWGG	4 cut(s)	70, 240, 516, 544
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeII	GATC	4 cut(s)	235, 290, 391, 526
NheI	GCTAGC	1 cut(s)	374
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	5 cut(s)	67, 74, 237, 299, 513
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	40
NspI	RCATGY	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	4, 443
PkrI	GCNGC	2 cut(s)	223, 226
PpuMI	RGGWCCY	1 cut(s)	511
Psp124BI	GAGCTC	1 cut(s)	542
Psp5II	RGGWCCY	1 cut(s)	511
Psp6I	CCWGG	4 cut(s)	68, 238, 514, 542
PspGI	CCWGG	4 cut(s)	68, 238, 514, 542
PspN4I	GGNNCC	5 cut(s)	67, 74, 237, 299, 513
PspPI	GGNCC	4 cut(s)	73, 202, 298, 511
PspPPI	RGGWCCY	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	542
SaqAI	TTAA	2 cut(s)	159, 230
SatI	GCNGC	2 cut(s)	222, 225
Sau3AI	GATC	4 cut(s)	235, 290, 391, 526
Sau96I	GGNCC	4 cut(s)	73, 202, 298, 511
ScrFI	CCNGG	4 cut(s)	70, 240, 516, 544
SduI	GDGCHC	1 cut(s)	542
SetI	ASST	8 cut(s)	13, 153, 223, 259, 326, 376, 478, 542
SfcI	CTRYAG	1 cut(s)	89
SinI	GGWCC	2 cut(s)	73, 511
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	567
SsiI	CCGC	1 cut(s)	395
SspMI	CTAG	4 cut(s)	185, 287, 353, 375
SstI	GAGCTC	1 cut(s)	542
StyD4I	CCNGG	4 cut(s)	68, 238, 514, 542
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	4 cut(s)	18, 164, 172, 433
TaqI	TCGA	2 cut(s)	387, 525
TasI	AATT	1 cut(s)	567
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	4, 443
Tru1I	TTAA	2 cut(s)	159, 230
Tru9I	TTAA	2 cut(s)	159, 230
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	2 cut(s)	221, 224
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	5 cut(s)	141, 149, 210, 579, 594
TspRI	CASTG	1 cut(s)	438
VpaK11BI	GGWCC	2 cut(s)	73, 511
XbaI	TCTAGA	2 cut(s)	184, 352
XceI	RCATGY	1 cut(s)	42
XspI	CTAG	4 cut(s)	185, 287, 353, 375
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.