Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

8645997 .. 8650211

Gene Structure 4215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00006660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCTATGCTACCGAAGAGGTTCAAAAGATTGTTAACCATCTTGACAAGCTAGATAATTTGTTAAGGATTCAATTTGTTAATGGACGTGTACCACAATCTATATCAGAAATACGAGGGTTGGTGTGCGAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCTGCCTGTTGCTCCTACTGGCAAGTTGATCATGTTCATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

113

Amino Acids

12.5

Weight (kDa)

4.49

Isoelectric Point (pI)

29.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	98, 111
AfaI	GTAC	2 cut(s)	23, 201
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	86, 134, 182
AjiI	CACGTC	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	3 cut(s)	89, 160, 278
AluI	AGCT	3 cut(s)	89, 160, 278
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	98, 111
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	89, 92
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	70
AsuNHI	GCTAGC	1 cut(s)	278
BamHI	GGATCC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	76, 79
BccI	CCATC	1 cut(s)	156
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	108
BclI	TGATCA	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	4 cut(s)	53, 161, 257, 279
BisI	GCNGC	2 cut(s)	90, 93
BlsI	GCNGC	2 cut(s)	91, 94
Bme1390I	CCNGG	1 cut(s)	108
BmgBI	CACGTC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	108
BmrI	ACTGGG	1 cut(s)	258
BmtI	GCTAGC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	116
Bse1I	ACTGG	3 cut(s)	82, 253, 319
BseBI	CCWGG	1 cut(s)	108
BseNI	ACTGG	3 cut(s)	82, 253, 319
BseXI	GCAGC	2 cut(s)	76, 79
BshFI	GGCC	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	71
Bso31I	GGTCTC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	103, 295, 324
BspANI	GGCC	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	105
BspOI	GCTAGC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	98, 111
BspTNI	GGTCTC	1 cut(s)	116
BsrI	ACTGG	3 cut(s)	82, 253, 319
BssMI	GATC	3 cut(s)	103, 295, 324
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	32, 40
Bst6I	CTCTTC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	280
BstKTI	GATC	3 cut(s)	106, 298, 327
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	103, 295, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	76, 79
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	71
BtrI	CACGTC	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	22, 200
CviAII	CATG	2 cut(s)	328, 334
CviJI	RGCY	4 cut(s)	71, 89, 160, 278
CviKI_1	RGCY	4 cut(s)	71, 89, 160, 278
CviQI	GTAC	2 cut(s)	22, 200
DpnI	GATC	3 cut(s)	105, 297, 326
DpnII	GATC	3 cut(s)	103, 295, 324
DraI	TTTAAA	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	106
FaeI	CATG	2 cut(s)	331, 337
FaiI	YATR	6 cut(s)	63, 117, 212, 245, 329, 335
FatI	CATG	2 cut(s)	327, 333
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	90, 93
Fsp4HI	GCNGC	2 cut(s)	90, 93
FspBI	CTAG	4 cut(s)	53, 161, 257, 279
GluI	GCNGC	2 cut(s)	90, 93
HaeIII	GGCC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	331, 337
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	178
HpaI	GTTAAC	1 cut(s)	145
Hpy166II	GTNNAC	3 cut(s)	43, 145, 200
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	4 cut(s)	14, 53, 152, 257
Hpy8I	GTNNAC	3 cut(s)	43, 145, 200
HpyCH4III	ACNGT	2 cut(s)	32, 40
HpyCH4IV	ACGT	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	2 cut(s)	331, 337
Ksp22I	TGATCA	1 cut(s)	324
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	103, 295, 324
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	9 cut(s)	27, 32, 63, 93, 120, 234, 288, 300, 315
Lsp1109I	GCAGC	2 cut(s)	76, 79
MaeI	CTAG	4 cut(s)	53, 161, 257, 279
MaeII	ACGT	1 cut(s)	196
MalI	GATC	3 cut(s)	105, 297, 326
MboI	GATC	3 cut(s)	103, 295, 324
MboII	GAAGA	1 cut(s)	137
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	3 cut(s)	166, 182, 283
MnlI	CCTC	4 cut(s)	121, 218, 232, 253
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	5 cut(s)	27, 98, 144, 173, 189
MslI	CAYNNNNRTG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	3 cut(s)	103, 295, 324
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	331, 337
NlaIV	GGNNCC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	91, 94
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	2 cut(s)	23, 201
RsaNI	GTAC	2 cut(s)	22, 200
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	5 cut(s)	27, 98, 144, 173, 189
SatI	GCNGC	2 cut(s)	90, 93
Sau3AI	GATC	3 cut(s)	103, 295, 324
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	6 cut(s)	21, 91, 132, 162, 199, 280
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	166, 182, 283
SspMI	CTAG	4 cut(s)	53, 161, 257, 279
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	32, 40
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	291
TasI	AATT	3 cut(s)	166, 182, 283
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	5 cut(s)	27, 98, 144, 173, 189
Tru9I	TTAA	5 cut(s)	27, 98, 144, 173, 189
TseI	GCWGC	2 cut(s)	89, 92
TspDTI	ATGAA	3 cut(s)	17, 78, 322
XbaI	TCTAGA	2 cut(s)	52, 256
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	4 cut(s)	53, 161, 257, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.