Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

34309547 .. 34309939

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGAACACGAATAAAAGTTGGGTTCTTAAAGTTTTCAATTTCATGGTTGGTGTGCGAGGACATAACTGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTCCTACGGGCAAGTTGATCATGTTCATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

52

Amino Acids

5.8

Weight (kDa)

5.6

Isoelectric Point (pI)

9.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	37
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
AlwI	GGATC	1 cut(s)	107
AsuNHI	GCTAGC	1 cut(s)	95
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BclI	TGATCA	1 cut(s)	141
BfaI	CTAG	2 cut(s)	74, 96
BmrI	ACTGGG	1 cut(s)	76
BmtI	GCTAGC	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	112, 141
BspACI	CCGC	1 cut(s)	116
BspOI	GCTAGC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	71
BssMI	GATC	2 cut(s)	112, 141
BstC8I	GCNNGC	1 cut(s)	97
BstKTI	GATC	2 cut(s)	115, 144
BstMBI	GATC	2 cut(s)	112, 141
BstMWI	GCNNNNNNNGC	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	97
CviAII	CATG	3 cut(s)	43, 145, 151
CviJI	RGCY	1 cut(s)	95
CviKI_1	RGCY	1 cut(s)	95
DpnI	GATC	2 cut(s)	114, 143
DpnII	GATC	2 cut(s)	112, 141
EciI	GGCGGA	1 cut(s)	105
FaeI	CATG	3 cut(s)	46, 148, 154
FaiI	YATR	4 cut(s)	44, 63, 146, 152
FatI	CATG	3 cut(s)	42, 144, 150
FbaI	TGATCA	1 cut(s)	141
FspBI	CTAG	2 cut(s)	74, 96
Hin1II	CATG	3 cut(s)	46, 148, 154
Hpy188III	TCNNGA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
Hsp92II	CATG	3 cut(s)	46, 148, 154
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	112, 141
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	52, 105, 132
MaeI	CTAG	2 cut(s)	74, 96
MalI	GATC	2 cut(s)	114, 143
MboI	GATC	2 cut(s)	112, 141
MluCI	AATT	2 cut(s)	37, 100
MnlI	CCTC	2 cut(s)	50, 70
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	2 cut(s)	112, 141
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	3 cut(s)	46, 148, 154
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	112, 141
SetI	ASST	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	37, 100
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	2 cut(s)	74, 96
TaqI	TCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	37, 100
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TspDTI	ATGAA	3 cut(s)	17, 31, 139
XbaI	TCTAGA	1 cut(s)	73
XspI	CTAG	2 cut(s)	74, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.