Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

64394286 .. 64400839

Gene Structure 6554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG454700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGATTCAACCTTTACTGTCAGACAATCTTGGAAATGCATGTCTTACAAGTGTTTTTGTGACCGGAGTCTGGGACCAAGCCAAACTTCTGCAGTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCATGGTCTCTATGCTACCGAAGAGGTTCAAAAGATTGTTAACCATCTTGACAAGCTAGATAATTTGTTAAGGGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGGCTGTGAAGGAGGATTTGCGTAGAGTGATGGACTTGCTATTTCTGAGGGACTTGGTTATATTCCGCCTGATGCCCCAGCCTGATGTCCATGGCTACTACGCACACCATTGGGCTGATCTCGCCCACTACATAATTCAGAGTTATAAGTTCTTTGGAGGCAAGAAAAAGGGGAATTGTGCTGGAAGAGAGCTGTGGACATTGCTTTTGCAACGGCTGTTGGTGTGCGAGGACATAACTGGGGGTCTAGAGGATATTTCCCTTCCAGCTAGCAATTTGGTCGATGATCTGCCTGTTGCTCCTACTGGCAAGTTGATCATGTTCATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

227

Amino Acids

25.66

Weight (kDa)

6.17

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AciI	CCGC	1 cut(s)	418
AclWI	GGATC	1 cut(s)	243
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	3 cut(s)	8, 218, 266
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	4 cut(s)	221, 292, 544, 620
AluI	AGCT	4 cut(s)	221, 292, 544, 620
Alw26I	GTCTC	2 cut(s)	99, 248
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	221, 224
ArsI	GACNNNNNNTTYG	2 cut(s)	541, 573
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	73, 202
AsuNHI	GCTAGC	1 cut(s)	620
AvaII	GGWCC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	208, 211
BccI	CCATC	2 cut(s)	288, 376
BceAI	ACGGC	1 cut(s)	581
BcgI	CGANNNNNNTGC	2 cut(s)	613, 647
BclI	TGATCA	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	99, 248
BfaI	CTAG	4 cut(s)	185, 293, 599, 621
BfmI	CTRYAG	1 cut(s)	89
BglII	AGATCT	1 cut(s)	320
BisI	GCNGC	2 cut(s)	222, 225
BlsI	GCNGC	2 cut(s)	223, 226
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	73, 202
BmiI	GGNNCC	1 cut(s)	74
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	3 cut(s)	344, 353, 414
BmtI	GCTAGC	1 cut(s)	624
BmuI	ACTGGG	1 cut(s)	600
BoxI	GACNNNNGTC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	442
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	3 cut(s)	214, 595, 661
Bse3DI	GCAATG	1 cut(s)	551
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	3 cut(s)	214, 595, 661
BseXI	GCAGC	2 cut(s)	208, 211
BseYI	CCCAGC	1 cut(s)	429
BshFI	GGCC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	3 cut(s)	86, 324, 416
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	2 cut(s)	99, 248
BsmFI	GGGAC	3 cut(s)	86, 324, 416
BsnI	GGCC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	248
Bsp143I	GATC	5 cut(s)	235, 320, 469, 637, 666
Bsp19I	CCATGG	1 cut(s)	442
BspACI	CCGC	1 cut(s)	418
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	93
BspOI	GCTAGC	1 cut(s)	624
BspPI	GGATC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	551
BsrI	ACTGG	3 cut(s)	214, 595, 661
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	5 cut(s)	235, 320, 469, 637, 666
BssT1I	CCWWGG	1 cut(s)	442
Bst4CI	ACNGT	3 cut(s)	18, 164, 172
Bst6I	CTCTTC	2 cut(s)	252, 532
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	1 cut(s)	398
BstDSI	CCRYGG	1 cut(s)	442
BstF5I	GGATG	1 cut(s)	138
BstKTI	GATC	5 cut(s)	238, 323, 472, 640, 669
BstMAI	GTCTC	2 cut(s)	99, 248
BstMBI	GATC	5 cut(s)	235, 320, 469, 637, 666
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 473
BstNSI	RCATGY	2 cut(s)	42, 317
BstPAI	GACNNNNGTC	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	208, 211
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	622
Cfr13I	GGNCC	2 cut(s)	73, 202
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	6 cut(s)	39, 239, 314, 443, 670, 676
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	5 cut(s)	237, 322, 471, 639, 668
DpnII	GATC	5 cut(s)	235, 320, 469, 637, 666
DraI	TTTAAA	1 cut(s)	231
Eam1104I	CTCTTC	2 cut(s)	252, 532
EarI	CTCTTC	2 cut(s)	252, 532
EciI	GGCGGA	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	442
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	442
EcoT22I	ATGCAT	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	6 cut(s)	42, 242, 317, 446, 673, 679
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	3 cut(s)	86, 324, 416
FatI	CATG	6 cut(s)	38, 238, 313, 442, 669, 675
FbaI	TGATCA	1 cut(s)	666
Fnu4HI	GCNGC	2 cut(s)	222, 225
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	222, 225
FspBI	CTAG	4 cut(s)	185, 293, 599, 621
GluI	GCNGC	2 cut(s)	222, 225
GsaI	CCCAGC	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	6 cut(s)	42, 242, 317, 446, 673, 679
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	2 cut(s)	4, 66
HpaI	GTTAAC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	63
Hpy166II	GTNNAC	3 cut(s)	175, 277, 549
Hpy188I	TCNGA	3 cut(s)	22, 399, 492
Hpy188III	TCNNGA	4 cut(s)	146, 185, 284, 599
Hpy8I	GTNNAC	3 cut(s)	175, 277, 549
HpyAV	CCTTC	2 cut(s)	355, 623
HpyCH4III	ACNGT	3 cut(s)	18, 164, 172
HpyCH4V	TGCA	4 cut(s)	38, 91, 335, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 473
HpyF3I	CTNAG	1 cut(s)	398
Hsp92II	CATG	6 cut(s)	42, 242, 317, 446, 673, 679
Ksp22I	TGATCA	1 cut(s)	666
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	235, 320, 469, 637, 666
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	2 cut(s)	208, 211
LweI	GCATC	3 cut(s)	344, 353, 414
MaeI	CTAG	4 cut(s)	185, 293, 599, 621
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	5 cut(s)	237, 322, 471, 639, 668
MboI	GATC	5 cut(s)	235, 320, 469, 637, 666
MboII	GAAGA	2 cut(s)	269, 549
MflI	RGATCY	1 cut(s)	320
MluCI	AATT	4 cut(s)	298, 486, 526, 625
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	6 cut(s)	253, 358, 393, 503, 574, 595
Mph1103I	ATGCAT	1 cut(s)	40
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	4 cut(s)	159, 230, 276, 305
MslI	CAYNNNNRTG	1 cut(s)	674
MspI	CCGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	341, 473
NcoI	CCATGG	1 cut(s)	442
NdeII	GATC	5 cut(s)	235, 320, 469, 637, 666
NheI	GCTAGC	1 cut(s)	620
NlaIII	CATG	6 cut(s)	42, 242, 317, 446, 673, 679
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	40
NspI	RCATGY	2 cut(s)	42, 317
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	223, 226
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PshAI	GACNNNNGTC	1 cut(s)	65
PsiI	TTATAA	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	2 cut(s)	73, 202
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	320
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	674
SaqAI	TTAA	4 cut(s)	159, 230, 276, 305
SatI	GCNGC	2 cut(s)	222, 225
Sau3AI	GATC	5 cut(s)	235, 320, 469, 637, 666
Sau96I	GGNCC	2 cut(s)	73, 202
SchI	GAGTC	1 cut(s)	75
SetI	ASST	7 cut(s)	13, 153, 223, 264, 294, 546, 622
SfaNI	GCATC	3 cut(s)	344, 353, 414
SfcI	CTRYAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	674
Sse9I	AATT	4 cut(s)	298, 486, 526, 625
SsiI	CCGC	1 cut(s)	418
SspMI	CTAG	4 cut(s)	185, 293, 599, 621
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	3 cut(s)	18, 164, 172
TaqI	TCGA	1 cut(s)	633
TasI	AATT	4 cut(s)	298, 486, 526, 625
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	4 cut(s)	159, 230, 276, 305
Tru9I	TTAA	4 cut(s)	159, 230, 276, 305
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	2 cut(s)	221, 224
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	4 cut(s)	141, 149, 210, 664
VpaK11BI	GGWCC	1 cut(s)	73
XbaI	TCTAGA	2 cut(s)	184, 598
XceI	RCATGY	2 cut(s)	42, 317
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	4 cut(s)	185, 293, 599, 621
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.