RLG00000006731

tetratricopeptide repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
10001624 .. 10005482
3859 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006731

Sequence Viewer

Length: 1257 bp
ATGAGCACTCCAGCAGTGGAAAACGACGCACTGGAGAAAGCCGGTAGTGCCACCGAAGCTCTTTACTTAACTCGAGATACCTACTTTCCGGCGAACCCCGACGACAAAATCGCCAGACTAAAATCAGAATCCGATCTCGCTCTCAACCTCCTCGATTCCATTCCTCCCGAGCAAAGGAAGCTTCTAACGCAGCGTGCAAGGTACGAATATCTGAGAGGGAAGATATTGGATGTATTGCCGGAGTATAAAAGAGAGGCTGAGGATCATCTCTCGAAAGCGGTTAAGTTGAATCCATCTCTTGCGGATGCGTGGCTGTGCTTAGGTAACTGCATTTGGAAGAAGGGAGATCTGTCTTCGGCCAAGAACTGCTTGACTCTTGCACTAAGCAAAGGTCCAAACAAACAGATACTATGTCAACTCTCAATGCTCGAAAGGAAAATGGCCCAAGGTGCCGATAATCAGGCAGAACTTGTTGATGAGAGCATAAAACATGCCAAGGAAGCTATAACTTTGGATGTCAAGGATGGGAATTCATGGTACAATCTTGGAAATGCATGTCTTACAAGTTTTTTTGTGACCGGAGCCTGGGACCACGCCAAACTTCTGCAGTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACCGAAGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTGTTAAGGGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGGCTGTGGTAAATTTGAATTCGTCATATAAAAGGGCTACTGTAAATCTTTTATCAGAGGGTCTGAACAAAGCAGTAGCATTAGTTGGGAAAGTGCTATTCTTCATTAAGCATGAAAATGTTGCTCCACTGTACTATTTGGCATGCGATCCAGATCAAGTATGCTTTGTTCTGTCAGTCTATGGCATTCAATATGATTCAATCAAAGAAGGAGACCTGATAACACTAGTGGATCCCTTATACCGGCAGGTCGAATTTTCTTGGAAAGCAAAGTTTTACCAGTTCAAATCATTTCGTGTGGATTTCAAAGAACAATTGCTTGTGAATGGAAAGGCTCTGACTCCTCACCAAGCAGTCCGCACCTCAATTCATGCACAGCATAAACCATGA

Protein Analysis

419

Amino Acids

46.83

Weight (kDa)

7.97

Isoelectric Point (pI)

26.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TTC5_OB PF16669 298 - 410 1.6e-36 Tetratricopeptide repeat protein 5 OB fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1105
AccB1I GGYRCC 1 cut(s) 449
AciI CCGC 3 cut(s) 278, 302, 1225
AclWI GGATC 6 cut(s) 270, 746, 759, 1010, 1094, 1107
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 4 cut(s) 529, 880, 886, 1121
AfaI GTAC 4 cut(s) 203, 539, 671, 1001
AfiI CCNNNNNNNGG 3 cut(s) 174, 585, 1110
AgsI TTSAA 8 cut(s) 289, 734, 782, 886, 1058, 1068, 1153, 1174
AhlI ACTAGT 1 cut(s) 1093
AjnI CCWGG 2 cut(s) 584, 754
AluBI AGCT 5 cut(s) 59, 181, 503, 737, 808
AluI AGCT 5 cut(s) 59, 181, 503, 737, 808
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 615, 764, 1074
AlwI GGATC 6 cut(s) 270, 746, 759, 1010, 1094, 1107
Ama87I CYCGRG 2 cut(s) 72, 167
AoxI GGCC 3 cut(s) 357, 441, 717
ApeKI GCWGC 3 cut(s) 190, 737, 740
ApoI RAATTY 4 cut(s) 529, 880, 886, 1121
Asp700I GAANNNNTTC 1 cut(s) 777
AspS9I GGNCC 4 cut(s) 392, 442, 589, 718
AsuHPI GGTGA 1 cut(s) 1205
AvaI CYCGRG 2 cut(s) 72, 167
AvaII GGWCC 2 cut(s) 392, 589
BamHI GGATCC 2 cut(s) 751, 1099
BanI GGYRCC 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 3 cut(s) 202, 724, 727
BccI CCATC 2 cut(s) 301, 518
BciT130I CCWGG 2 cut(s) 586, 756
BcoDI GTCTC 3 cut(s) 615, 764, 1074
BcuI ACTAGT 1 cut(s) 1093
BfaI CTAG 3 cut(s) 701, 809, 1094
BfmI CTRYAG 1 cut(s) 605
BfuAI ACCTGC 1 cut(s) 1105
BglII AGATCT 2 cut(s) 346, 836
BisI GCNGC 3 cut(s) 191, 738, 741
BlsI GCNGC 3 cut(s) 192, 739, 742
Bme1390I CCNGG 2 cut(s) 586, 756
Bme18I GGWCC 2 cut(s) 392, 589
BmeT110I CYCGRG 2 cut(s) 72, 167
BmgT120I GGNCC 4 cut(s) 392, 442, 589, 718
BmiI GGNNCC 5 cut(s) 451, 583, 590, 753, 1101
BmrFI CCNGG 2 cut(s) 586, 756
BmsI GCATC 3 cut(s) 295, 860, 869
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 2 cut(s) 258, 319
BsaBI GATNNNNATC 1 cut(s) 1020
BsaI GGTCTC 2 cut(s) 764, 1074
BsaJI CCNNGG 3 cut(s) 445, 495, 585
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 585, 1110
Bse118I RCCGGY 2 cut(s) 41, 1110
Bse1I ACTGG 3 cut(s) 36, 730, 1147
Bse8I GATNNNNATC 1 cut(s) 1020
BseBI CCWGG 2 cut(s) 586, 756
BseDI CCNNGG 3 cut(s) 445, 495, 585
BseGI GGATG 5 cut(s) 235, 310, 520, 529, 654
BseJI GATNNNNATC 1 cut(s) 1020
BseLI CCNNNNNNNGG 3 cut(s) 174, 585, 1110
BseMII CTCAG 2 cut(s) 203, 249
BseNI ACTGG 3 cut(s) 36, 730, 1147
BseRI GAGGAG 2 cut(s) 140, 1200
BseXI GCAGC 3 cut(s) 202, 724, 727
BshFI GGCC 3 cut(s) 359, 443, 719
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 2 cut(s) 72, 167
BsiSI CCGG 5 cut(s) 42, 89, 239, 579, 1111
BslFI GGGAC 2 cut(s) 602, 840
BslI CCNNNNNNNGG 3 cut(s) 174, 585, 1110
BsmAI GTCTC 3 cut(s) 615, 764, 1074
BsmFI GGGAC 2 cut(s) 602, 840
BsmI GAATGC 1 cut(s) 1053
BsnI GGCC 3 cut(s) 359, 443, 719
Bso31I GGTCTC 2 cut(s) 764, 1074
BsoBI CYCGRG 2 cut(s) 72, 167
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 8 cut(s) 133, 262, 346, 751, 836, 1015, 1021, 1099
BspACI CCGC 3 cut(s) 278, 302, 1225
BspANI GGCC 3 cut(s) 359, 443, 719
BspCNI CTCAG 2 cut(s) 204, 250
BspLI GGNNCC 5 cut(s) 451, 583, 590, 753, 1101
BspMAI CTGCAG 1 cut(s) 609
BspMI ACCTGC 1 cut(s) 1105
BspPI GGATC 6 cut(s) 270, 746, 759, 1010, 1094, 1107
BspT107I GGYRCC 1 cut(s) 449
BspTNI GGTCTC 2 cut(s) 764, 1074
BsrFI RCCGGY 2 cut(s) 41, 1110
BsrI ACTGG 3 cut(s) 36, 730, 1147
BssAI RCCGGY 2 cut(s) 41, 1110
BssECI CCNNGG 3 cut(s) 445, 495, 585
BssMI GATC 8 cut(s) 133, 262, 346, 751, 836, 1015, 1021, 1099
BssT1I CCWWGG 2 cut(s) 445, 495
Bst2UI CCWGG 2 cut(s) 586, 756
Bst4CI ACNGT 4 cut(s) 680, 688, 910, 999
Bst6I CTCTTC 1 cut(s) 768
BstC8I GCNNGC 2 cut(s) 195, 1012
BstDEI CTNAG 4 cut(s) 212, 258, 319, 383
BstF5I GGATG 5 cut(s) 235, 310, 520, 529, 654
BstKTI GATC 8 cut(s) 136, 265, 349, 754, 839, 1018, 1024, 1102
BstMAI GTCTC 3 cut(s) 615, 764, 1074
BstMBI GATC 8 cut(s) 133, 262, 346, 751, 836, 1015, 1021, 1099
BstMWI GCNNNNNNNGC 7 cut(s) 47, 56, 178, 187, 449, 500, 857
BstNI CCWGG 2 cut(s) 586, 756
BstNSI RCATGY 4 cut(s) 494, 558, 833, 1014
BstSCI CCNGG 2 cut(s) 584, 754
BstSFI CTRYAG 1 cut(s) 605
BstV1I GCAGC 3 cut(s) 202, 724, 727
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 4 cut(s) 346, 751, 836, 1099
BstYI RGATCY 4 cut(s) 346, 751, 836, 1099
BsuRI GGCC 3 cut(s) 359, 443, 719
BtsCI GGATG 5 cut(s) 235, 310, 520, 529, 654
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 3 cut(s) 21, 29, 995
BveI ACCTGC 1 cut(s) 1105
Cac8I GCNNGC 2 cut(s) 195, 1012
Cfr10I RCCGGY 2 cut(s) 41, 1110
Cfr13I GGNCC 4 cut(s) 392, 442, 589, 718
CseI GACGC 1 cut(s) 35
Csp6I GTAC 4 cut(s) 202, 538, 670, 1000
CviAII CATG 8 cut(s) 491, 534, 555, 830, 980, 1011, 1238, 1254
CviQI GTAC 4 cut(s) 202, 538, 670, 1000
DdeI CTNAG 4 cut(s) 212, 258, 319, 383
DpnI GATC 8 cut(s) 135, 264, 348, 753, 838, 1017, 1023, 1101
DpnII GATC 8 cut(s) 133, 262, 346, 751, 836, 1015, 1021, 1099
DraI TTTAAA 1 cut(s) 747
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 768
EarI CTCTTC 1 cut(s) 768
Eco130I CCWWGG 2 cut(s) 445, 495
Eco31I GGTCTC 2 cut(s) 764, 1074
Eco47I GGWCC 2 cut(s) 392, 589
Eco88I CYCGRG 2 cut(s) 72, 167
EcoRI GAATTC 2 cut(s) 529, 886
EcoRII CCWGG 2 cut(s) 584, 754
EcoT14I CCWWGG 2 cut(s) 445, 495
EcoT22I ATGCAT 1 cut(s) 556
ErhI CCWWGG 2 cut(s) 445, 495
FaeI CATG 8 cut(s) 494, 537, 558, 833, 983, 1014, 1241, 1257
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 2 cut(s) 602, 840
FatI CATG 8 cut(s) 490, 533, 554, 829, 979, 1010, 1237, 1253
Fnu4HI GCNGC 3 cut(s) 191, 738, 741
FokI GGATG 5 cut(s) 242, 317, 527, 536, 661
Fsp4HI GCNGC 3 cut(s) 191, 738, 741
FspBI CTAG 3 cut(s) 701, 809, 1094
GluI GCNGC 3 cut(s) 191, 738, 741
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 3 cut(s) 359, 443, 719
HapII CCGG 5 cut(s) 42, 89, 239, 579, 1111
HgaI GACGC 1 cut(s) 35
Hin1II CATG 8 cut(s) 494, 537, 558, 833, 983, 1014, 1241, 1257
HincII GTYRAC 2 cut(s) 416, 793
HindII GTYRAC 2 cut(s) 416, 793
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 6 cut(s) 128, 155, 289, 373, 1064, 1207
HpaI GTTAAC 1 cut(s) 793
HpaII CCGG 5 cut(s) 42, 89, 239, 579, 1111
HphI GGTGA 1 cut(s) 1205
Hpy166II GTNNAC 3 cut(s) 416, 691, 793
Hpy188I TCNGA 6 cut(s) 127, 133, 213, 925, 933, 1206
Hpy188III TCNNGA 7 cut(s) 74, 167, 271, 662, 701, 800, 1019
Hpy8I GTNNAC 3 cut(s) 416, 691, 793
Hpy99I CGWCG 2 cut(s) 29, 104
HpyAV CCTTC 3 cut(s) 334, 806, 1070
HpyCH4III ACNGT 4 cut(s) 680, 688, 910, 999
HpyCH4V TGCA 7 cut(s) 197, 330, 380, 554, 607, 851, 1241
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 56, 178, 187, 449, 500, 857
HpyF3I CTNAG 4 cut(s) 212, 258, 319, 383
Hsp92II CATG 8 cut(s) 494, 537, 558, 833, 983, 1014, 1241, 1257
KspAI GTTAAC 1 cut(s) 793
Kzo9I GATC 8 cut(s) 133, 262, 346, 751, 836, 1015, 1021, 1099
LmnI GCTCC 2 cut(s) 581, 997
Lsp1109I GCAGC 3 cut(s) 202, 724, 727
LweI GCATC 3 cut(s) 295, 860, 869
MaeI CTAG 3 cut(s) 701, 809, 1094
MaeIII GTNAC 2 cut(s) 323, 574
MalI GATC 8 cut(s) 135, 264, 348, 753, 838, 1017, 1023, 1101
MboI GATC 8 cut(s) 133, 262, 346, 751, 836, 1015, 1021, 1099
MboII GAAGA 5 cut(s) 232, 345, 349, 785, 961
MfeI CAATTG 1 cut(s) 1181
MflI RGATCY 4 cut(s) 346, 751, 836, 1099
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 7 cut(s) 529, 814, 880, 886, 1121, 1181, 1233
MlyI GAGTC 2 cut(s) 367, 1201
Mph1103I ATGCAT 1 cut(s) 556
MroXI GAANNNNTTC 1 cut(s) 777
MseI TTAA 7 cut(s) 68, 282, 675, 746, 792, 821, 975
MslI CAYNNNNRTG 1 cut(s) 984
MspI CCGG 5 cut(s) 42, 89, 239, 579, 1111
MspR9I CCNGG 2 cut(s) 586, 756
MunI CAATTG 1 cut(s) 1181
Mva1269I GAATGC 1 cut(s) 1053
MvaI CCWGG 2 cut(s) 586, 756
MwoI GCNNNNNNNGC 7 cut(s) 47, 56, 178, 187, 449, 500, 857
NdeII GATC 8 cut(s) 133, 262, 346, 751, 836, 1015, 1021, 1099
NlaIII CATG 8 cut(s) 494, 537, 558, 833, 983, 1014, 1241, 1257
NlaIV GGNNCC 5 cut(s) 451, 583, 590, 753, 1101
NmuCI GTSAC 1 cut(s) 574
NsiI ATGCAT 1 cut(s) 556
NspI RCATGY 4 cut(s) 494, 558, 833, 1014
PaeI GCATGC 1 cut(s) 1014
PaeR7I CTCGAG 1 cut(s) 72
PctI GAATGC 1 cut(s) 1053
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 4 cut(s) 128, 155, 289, 1064
PkrI GCNGC 3 cut(s) 192, 739, 742
PleI GAGTC 2 cut(s) 367, 1201
PpsI GAGTC 2 cut(s) 367, 1201
Psp6I CCWGG 2 cut(s) 584, 754
PspGI CCWGG 2 cut(s) 584, 754
PspN4I GGNNCC 5 cut(s) 451, 583, 590, 753, 1101
PspPI GGNCC 4 cut(s) 392, 442, 589, 718
PsrI GAACNNNNNNTAC 2 cut(s) 1020, 1052
PstI CTGCAG 1 cut(s) 609
PsuI RGATCY 4 cut(s) 346, 751, 836, 1099
RsaI GTAC 4 cut(s) 203, 539, 671, 1001
RsaNI GTAC 4 cut(s) 202, 538, 670, 1000
RseI CAYNNNNRTG 1 cut(s) 984
SaqAI TTAA 7 cut(s) 68, 282, 675, 746, 792, 821, 975
SatI GCNGC 3 cut(s) 191, 738, 741
Sau3AI GATC 8 cut(s) 133, 262, 346, 751, 836, 1015, 1021, 1099
Sau96I GGNCC 4 cut(s) 392, 442, 589, 718
SchI GAGTC 2 cut(s) 367, 1201
ScrFI CCNGG 2 cut(s) 586, 756
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 3 cut(s) 295, 860, 869
SfcI CTRYAG 1 cut(s) 605
Sfr274I CTCGAG 1 cut(s) 72
SinI GGWCC 2 cut(s) 392, 589
SlaI CTCGAG 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 984
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
SpeI ACTAGT 1 cut(s) 1093
SphI GCATGC 1 cut(s) 1014
Sse9I AATT 7 cut(s) 529, 814, 880, 886, 1121, 1181, 1233
SsiI CCGC 3 cut(s) 278, 302, 1225
SspMI CTAG 3 cut(s) 701, 809, 1094
StyD4I CCNGG 2 cut(s) 584, 754
StyI CCWWGG 2 cut(s) 445, 495
TaaI ACNGT 4 cut(s) 680, 688, 910, 999
TaqI TCGA 5 cut(s) 73, 153, 272, 429, 1119
TasI AATT 7 cut(s) 529, 814, 880, 886, 1121, 1181, 1233
TatI WGTACW 2 cut(s) 669, 999
TfiI GAWTC 4 cut(s) 128, 155, 289, 1064
Tru1I TTAA 7 cut(s) 68, 282, 675, 746, 792, 821, 975
Tru9I TTAA 7 cut(s) 68, 282, 675, 746, 792, 821, 975
TscAI CASTG 3 cut(s) 21, 36, 1002
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 3 cut(s) 190, 737, 740
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 7 cut(s) 522, 657, 665, 726, 961, 996, 1226
TspRI CASTG 3 cut(s) 21, 36, 1002
VpaK11BI GGWCC 2 cut(s) 392, 589
XapI RAATTY 4 cut(s) 529, 880, 886, 1121
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 4 cut(s) 494, 558, 833, 1014
XhoI CTCGAG 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 3 cut(s) 701, 809, 1094
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.