Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

31012091 .. 31015466

Gene Structure 3376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAATGTTCTTGTTTATAATGGTGAGATCTTTGGGGGAATTGAGATTGCTAGTGAGGAGAATGATGGTGAAGTTCTAATGGGGTTGCTGGGAGGGTGTGAAAGTTATGTGCCGAATGTGGCAGAACTTGTTGATGAAAGCATAAAAGATGCCAAGGAAGCTATAACTTTGGATGTCAAGGATGGGAATTCATGGTACAATCTTGGAAATGCATGTCTTACAAGTTTTTTTGTGACCGGAGCCTGGGACCACGCCAAACTTCTGCAGTTTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGATCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACCGAAGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTGTTAAGGGGACATGCCAGATCTAAACGACTCGCATCTTTAGCATCATCTCTGGTTGTGGTAAATTTGAATTCGTCATATAAAAGGGCTACTGTAAATCTTTTATCAGAGGGTCTGAACAAAGCAGTAGCATTAGTTGGGAAAGTGCTATTCTTCATTAAGCATGAAAATGTTGCTCCATTTGAGGAGAATGATGGTGAAGTTCTAATAGGGTTGCTGGGAGGGTGTGAAAGTTGTGTGCCGAATGTGGTTTCTAGGTTCAAGGGGCCTTGGGCTATCATCTATTGGCAGATTCAATTTGTTAATGGACGTGTACCACAATCTATATCAGAAATACGAGGGTTGGTGTGCGAGGACATAACTGGGGGTCTAGAGGATATTGTCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTTTGCCAGTTGATGTTGTAAATATGGTTATCTTAGCAAGCATAAAGGAGTTAAGGCTTAAAGCTACTGGTGCATTGTTTTCACTTATTTGTGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

332

Amino Acids

36.1

Weight (kDa)

4.69

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TTC5_OB	PF16669	184 - 219	6.8e-06	Tetratricopeptide repeat protein 5 OB fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AciI	CCGC	1 cut(s)	887
AclWI	GGATC	3 cut(s)	404, 417, 878
AcsI	RAATTY	3 cut(s)	187, 538, 544
AfaI	GTAC	3 cut(s)	197, 329, 789
AfiI	CCNNNNNNNGG	1 cut(s)	243
AflIII	ACRYGT	1 cut(s)	784
AgsI	TTSAA	5 cut(s)	392, 440, 544, 736, 770
AjiI	CACGTC	1 cut(s)	785
AjnI	CCWGG	2 cut(s)	242, 412
AluBI	AGCT	5 cut(s)	161, 395, 466, 866, 959
AluI	AGCT	5 cut(s)	161, 395, 466, 866, 959
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	3 cut(s)	404, 417, 878
AoxI	GGCC	2 cut(s)	375, 740
ApeKI	GCWGC	2 cut(s)	395, 398
ApoI	RAATTY	3 cut(s)	187, 538, 544
Asp700I	GAANNNNTTC	1 cut(s)	435
AspS9I	GGNCC	3 cut(s)	247, 376, 740
AsuHPI	GGTGA	3 cut(s)	35, 80, 683
AsuNHI	GCTAGC	1 cut(s)	866
AvaII	GGWCC	1 cut(s)	247
BamHI	GGATCC	1 cut(s)	409
BbvI	GCAGC	2 cut(s)	382, 385
BccI	CCATC	3 cut(s)	59, 176, 662
BcgI	CGANNNNNNTGC	2 cut(s)	859, 893
BciT130I	CCWGG	2 cut(s)	244, 414
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	6 cut(s)	51, 359, 467, 729, 845, 867
BfmI	CTRYAG	1 cut(s)	263
BglII	AGATCT	3 cut(s)	27, 322, 494
BisI	GCNGC	2 cut(s)	396, 399
BlsI	GCNGC	2 cut(s)	397, 400
Bme1390I	CCNGG	2 cut(s)	244, 414
Bme18I	GGWCC	1 cut(s)	247
BmgBI	CACGTC	1 cut(s)	785
BmgT120I	GGNCC	3 cut(s)	247, 376, 740
BmiI	GGNNCC	4 cut(s)	241, 248, 411, 741
BmrFI	CCNGG	2 cut(s)	244, 414
BmrI	ACTGGG	1 cut(s)	846
BmsI	GCATC	3 cut(s)	139, 518, 527
BmtI	GCTAGC	1 cut(s)	870
BmuI	ACTGGG	1 cut(s)	846
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	153, 243, 743
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	4 cut(s)	388, 841, 902, 967
BseBI	CCWGG	2 cut(s)	244, 414
BseDI	CCNNGG	3 cut(s)	153, 243, 743
BseGI	GGATG	3 cut(s)	178, 187, 312
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseNI	ACTGG	4 cut(s)	388, 841, 902, 967
BseRI	GAGGAG	2 cut(s)	71, 674
BseXI	GCAGC	2 cut(s)	382, 385
BseYI	CCCAGC	2 cut(s)	88, 691
BshFI	GGCC	2 cut(s)	377, 742
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	2 cut(s)	260, 498
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	2 cut(s)	260, 498
BsnI	GGCC	2 cut(s)	377, 742
Bso31I	GGTCTC	1 cut(s)	422
Bsp143I	GATC	5 cut(s)	27, 322, 409, 494, 883
BspACI	CCGC	1 cut(s)	887
BspANI	GGCC	2 cut(s)	377, 742
BspLI	GGNNCC	4 cut(s)	241, 248, 411, 741
BspMAI	CTGCAG	1 cut(s)	267
BspOI	GCTAGC	1 cut(s)	870
BspPI	GGATC	3 cut(s)	404, 417, 878
BspTNI	GGTCTC	1 cut(s)	422
BsrI	ACTGG	4 cut(s)	388, 841, 902, 967
BssECI	CCNNGG	3 cut(s)	153, 243, 743
BssMI	GATC	5 cut(s)	27, 322, 409, 494, 883
BssT1I	CCWWGG	2 cut(s)	153, 743
Bst2UI	CCWGG	2 cut(s)	244, 414
Bst4CI	ACNGT	3 cut(s)	338, 346, 568
Bst6I	CTCTTC	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	868, 934
BstDEI	CTNAG	1 cut(s)	928
BstF5I	GGATG	3 cut(s)	178, 187, 312
BstKTI	GATC	5 cut(s)	30, 325, 412, 497, 886
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	5 cut(s)	27, 322, 409, 494, 883
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 515, 965
BstNI	CCWGG	2 cut(s)	244, 414
BstNSI	RCATGY	2 cut(s)	216, 491
BstSCI	CCNGG	2 cut(s)	242, 412
BstSFI	CTRYAG	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	382, 385
BstX2I	RGATCY	4 cut(s)	27, 322, 409, 494
BstYI	RGATCY	4 cut(s)	27, 322, 409, 494
BsuRI	GGCC	2 cut(s)	377, 742
BtrI	CACGTC	1 cut(s)	785
BtsCI	GGATG	3 cut(s)	178, 187, 312
Cac8I	GCNNGC	2 cut(s)	868, 934
Cfr13I	GGNCC	3 cut(s)	247, 376, 740
Csp6I	GTAC	3 cut(s)	196, 328, 788
CviAII	CATG	4 cut(s)	192, 213, 488, 638
CviQI	GTAC	3 cut(s)	196, 328, 788
DdeI	CTNAG	1 cut(s)	928
DpnI	GATC	5 cut(s)	29, 324, 411, 496, 885
DpnII	GATC	5 cut(s)	27, 322, 409, 494, 883
DraI	TTTAAA	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	876
Eco130I	CCWWGG	2 cut(s)	153, 743
Eco31I	GGTCTC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	740
EcoRI	GAATTC	2 cut(s)	187, 544
EcoRII	CCWGG	2 cut(s)	242, 412
EcoT14I	CCWWGG	2 cut(s)	153, 743
EcoT22I	ATGCAT	1 cut(s)	214
ErhI	CCWWGG	2 cut(s)	153, 743
FaeI	CATG	4 cut(s)	195, 216, 491, 641
FaqI	GGGAC	2 cut(s)	260, 498
FatI	CATG	4 cut(s)	191, 212, 487, 637
Fnu4HI	GCNGC	2 cut(s)	396, 399
FokI	GGATG	3 cut(s)	185, 194, 319
Fsp4HI	GCNGC	2 cut(s)	396, 399
FspBI	CTAG	6 cut(s)	51, 359, 467, 729, 845, 867
GluI	GCNGC	2 cut(s)	396, 399
GsaI	CCCAGC	2 cut(s)	92, 695
HaeIII	GGCC	2 cut(s)	377, 742
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	4 cut(s)	195, 216, 491, 641
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	2 cut(s)	504, 766
HpaI	GTTAAC	1 cut(s)	451
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	3 cut(s)	35, 80, 683
Hpy166II	GTNNAC	3 cut(s)	349, 451, 788
Hpy188I	TCNGA	3 cut(s)	583, 591, 805
Hpy188III	TCNNGA	4 cut(s)	320, 359, 458, 845
Hpy8I	GTNNAC	3 cut(s)	349, 451, 788
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	3 cut(s)	338, 346, 568
HpyCH4IV	ACGT	1 cut(s)	784
HpyCH4V	TGCA	3 cut(s)	212, 265, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 515, 965
HpyF3I	CTNAG	1 cut(s)	928
HpySE526I	ACGT	1 cut(s)	784
Hsp92II	CATG	4 cut(s)	195, 216, 491, 641
KspAI	GTTAAC	1 cut(s)	451
Kzo9I	GATC	5 cut(s)	27, 322, 409, 494, 883
LmnI	GCTCC	2 cut(s)	239, 655
Lsp1109I	GCAGC	2 cut(s)	382, 385
LweI	GCATC	3 cut(s)	139, 518, 527
MaeI	CTAG	6 cut(s)	51, 359, 467, 729, 845, 867
MaeII	ACGT	1 cut(s)	784
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	5 cut(s)	29, 324, 411, 496, 885
MboI	GATC	5 cut(s)	27, 322, 409, 494, 883
MboII	GAAGA	2 cut(s)	443, 619
MflI	RGATCY	4 cut(s)	27, 322, 409, 494
MluCI	AATT	7 cut(s)	39, 187, 472, 538, 544, 770, 871
MlyI	GAGTC	1 cut(s)	498
Mph1103I	ATGCAT	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	8 cut(s)	333, 404, 450, 479, 633, 777, 947, 954
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	244, 414
MvaI	CCWGG	2 cut(s)	244, 414
MwoI	GCNNNNNNNGC	3 cut(s)	158, 515, 965
NdeII	GATC	5 cut(s)	27, 322, 409, 494, 883
NheI	GCTAGC	1 cut(s)	866
NlaIII	CATG	4 cut(s)	195, 216, 491, 641
NlaIV	GGNNCC	4 cut(s)	241, 248, 411, 741
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	2 cut(s)	216, 491
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	766
PkrI	GCNGC	2 cut(s)	397, 400
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	242, 412
PspFI	CCCAGC	2 cut(s)	88, 691
PspGI	CCWGG	2 cut(s)	242, 412
PspN4I	GGNNCC	4 cut(s)	241, 248, 411, 741
PspPI	GGNCC	3 cut(s)	247, 376, 740
PstI	CTGCAG	1 cut(s)	267
PsuI	RGATCY	4 cut(s)	27, 322, 409, 494
RsaI	GTAC	3 cut(s)	197, 329, 789
RsaNI	GTAC	3 cut(s)	196, 328, 788
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	8 cut(s)	333, 404, 450, 479, 633, 777, 947, 954
SatI	GCNGC	2 cut(s)	396, 399
Sau3AI	GATC	5 cut(s)	27, 322, 409, 494, 883
Sau96I	GGNCC	3 cut(s)	247, 376, 740
SchI	GAGTC	1 cut(s)	498
ScrFI	CCNGG	2 cut(s)	244, 414
SfaNI	GCATC	3 cut(s)	139, 518, 527
SfcI	CTRYAG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	642
Sse9I	AATT	7 cut(s)	39, 187, 472, 538, 544, 770, 871
SsiI	CCGC	1 cut(s)	887
SspMI	CTAG	6 cut(s)	51, 359, 467, 729, 845, 867
StyD4I	CCNGG	2 cut(s)	242, 412
StyI	CCWWGG	2 cut(s)	153, 743
TaaI	ACNGT	3 cut(s)	338, 346, 568
TaiI	ACGT	1 cut(s)	787
TaqI	TCGA	1 cut(s)	879
TasI	AATT	7 cut(s)	39, 187, 472, 538, 544, 770, 871
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	766
Tru1I	TTAA	8 cut(s)	333, 404, 450, 479, 633, 777, 947, 954
Tru9I	TTAA	8 cut(s)	333, 404, 450, 479, 633, 777, 947, 954
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	2 cut(s)	395, 398
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	8 cut(s)	17, 150, 180, 315, 323, 384, 619, 654
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	3 cut(s)	187, 538, 544
XbaI	TCTAGA	2 cut(s)	358, 844
XceI	RCATGY	2 cut(s)	216, 491
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	6 cut(s)	51, 359, 467, 729, 845, 867
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.