Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

10451134 .. 10455231

Gene Structure 4098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG049900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAAGGGTCAATACAGAAGCCCACCGAACTGGGTGAAGATCTCTACTCCCGATACAATCTTGGAAATGCATGTCTTACAAGTGTTTTTGTGACCGGAGTCTGGGACCAAGCCAAACTTCTGCAGTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCATGGTCTCTATGCTACCGAAGAGGTTCAAAAGATTGTTAACCATCTTGACAAGCTAGATAATTTGTTAAGGGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGGCTGTGGATCAAGGGGCCTTGGGCTATCATCTATTGGCAGGTTACATGTATTGCAAGTCTATTCAAGTTGCGCAAAACGTGAAGCTTCCCAGAGATGCCACTGGATGCAATTGCAAAGGCAGTTGTGTAGATTCCAAGACCTGCCAATGTGCCAAACTTAACGGCTCTGACTTTCCATATGTGCACCGTGATGGTGGCAGATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGGTTGTGGACCTTCTGTGTCAACCGTACTTCTCAGACGGGGCTCAAGTACCTATTTGAGGACGTTGAAAATGGAGGAAGACAGACCAGATGATGCCTGTGATGCCTACCATACATATTTAGGTGTAGCAGGTATAATAGTAGATGCCCAGTTGAAGCCTCTGCTTTTACATAAGATGCATATAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

273

Amino Acids

30.11

Weight (kDa)

7.92

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-SET	PF05033	143 - 214	4.1e-12	Pre-SET motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	459
Acc36I	ACCTGC	3 cut(s)	416, 536, 752
AccB7I	CCANNNNNTGG	1 cut(s)	632
AclWI	GGATC	2 cut(s)	276, 402
AfaI	GTAC	3 cut(s)	188, 660, 682
AfiI	CCNNNNNNNGG	3 cut(s)	102, 632, 690
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	7 cut(s)	251, 299, 452, 596, 617, 700, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	3 cut(s)	254, 325, 472
AluI	AGCT	3 cut(s)	254, 325, 472
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	2 cut(s)	132, 281
Alw44I	GTGCAC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	276, 402
AoxI	GGCC	3 cut(s)	234, 402, 623
ApaLI	GTGCAC	1 cut(s)	569
ApeKI	GCWGC	2 cut(s)	254, 257
AseI	ATTAAT	1 cut(s)	590
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	5 cut(s)	106, 235, 402, 623, 641
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	2 cut(s)	106, 641
BaeGI	GKGCMC	1 cut(s)	573
BanII	GRGCYC	1 cut(s)	677
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	2 cut(s)	241, 244
BccI	CCATC	2 cut(s)	321, 572
BceAI	ACGGC	1 cut(s)	565
BcoDI	GTCTC	2 cut(s)	132, 281
BfaI	CTAG	2 cut(s)	218, 326
BfmI	CTRYAG	1 cut(s)	122
BfuAI	ACCTGC	3 cut(s)	416, 536, 752
BglII	AGATCT	2 cut(s)	40, 353
BisI	GCNGC	2 cut(s)	255, 258
BlsI	GCNGC	2 cut(s)	256, 259
Bme18I	GGWCC	2 cut(s)	106, 641
BmgT120I	GGNCC	5 cut(s)	106, 235, 402, 623, 641
BmiI	GGNNCC	2 cut(s)	107, 403
BmrI	ACTGGG	2 cut(s)	41, 775
BmsI	GCATC	8 cut(s)	377, 386, 472, 482, 715, 724, 766, 798
BmuI	ACTGGG	2 cut(s)	41, 775
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	717
BpuEI	CTTGAG	1 cut(s)	661
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	405, 600
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 632, 690
Bse1I	ACTGG	4 cut(s)	36, 247, 493, 781
BseDI	CCNNGG	2 cut(s)	405, 600
BseGI	GGATG	3 cut(s)	171, 497, 610
BseLI	CCNNNNNNNGG	3 cut(s)	102, 632, 690
BseMII	CTCAG	1 cut(s)	679
BseNI	ACTGG	4 cut(s)	36, 247, 493, 781
BseSI	GKGCMC	1 cut(s)	573
BseXI	GCAGC	2 cut(s)	241, 244
BshFI	GGCC	3 cut(s)	236, 404, 625
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	2 cut(s)	119, 357
BslI	CCNNNNNNNGG	3 cut(s)	102, 632, 690
BsmAI	GTCTC	2 cut(s)	132, 281
BsmFI	GGGAC	2 cut(s)	119, 357
BsnI	GGCC	3 cut(s)	236, 404, 625
Bso31I	GGTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	573, 677
Bsp143I	GATC	4 cut(s)	40, 268, 353, 394
BspANI	GGCC	3 cut(s)	236, 404, 625
BspCNI	CTCAG	1 cut(s)	678
BspLI	GGNNCC	2 cut(s)	107, 403
BspMAI	CTGCAG	1 cut(s)	126
BspMI	ACCTGC	3 cut(s)	416, 536, 752
BspPI	GGATC	2 cut(s)	276, 402
BspTNI	GGTCTC	1 cut(s)	281
BsrI	ACTGG	4 cut(s)	36, 247, 493, 781
BssECI	CCNNGG	2 cut(s)	405, 600
BssMI	GATC	4 cut(s)	40, 268, 353, 394
BssT1I	CCWWGG	2 cut(s)	405, 600
Bst4CI	ACNGT	4 cut(s)	197, 205, 575, 658
Bst6I	CTCTTC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	665
BstENI	CCTNNNNNAGG	1 cut(s)	688
BstF5I	GGATG	3 cut(s)	171, 497, 610
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	4 cut(s)	43, 271, 356, 397
BstMAI	GTCTC	2 cut(s)	132, 281
BstMBI	GATC	4 cut(s)	40, 268, 353, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 734
BstNSI	RCATGY	3 cut(s)	75, 350, 436
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	122
BstSLI	GKGCMC	1 cut(s)	573
BstV1I	GCAGC	2 cut(s)	241, 244
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	2 cut(s)	40, 353
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	2 cut(s)	40, 353
BsuRI	GGCC	3 cut(s)	236, 404, 625
BtsCI	GGATG	3 cut(s)	171, 497, 610
BtsIMutI	CAGTG	1 cut(s)	486
BveI	ACCTGC	3 cut(s)	416, 536, 752
CfoI	GCGC	1 cut(s)	460
Cfr13I	GGNCC	5 cut(s)	106, 235, 402, 623, 641
Csp6I	GTAC	3 cut(s)	187, 659, 681
CviAII	CATG	5 cut(s)	72, 272, 347, 433, 819
CviQI	GTAC	3 cut(s)	187, 659, 681
DdeI	CTNAG	1 cut(s)	665
DpnI	GATC	4 cut(s)	42, 270, 355, 396
DpnII	GATC	4 cut(s)	40, 268, 353, 394
DraI	TTTAAA	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	405, 600
Eco24I	GRGCYC	1 cut(s)	677
Eco31I	GGTCTC	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	106, 641
EcoNI	CCTNNNNNAGG	1 cut(s)	688
EcoO109I	RGGNCCY	1 cut(s)	402
EcoT14I	CCWWGG	2 cut(s)	405, 600
EcoT22I	ATGCAT	2 cut(s)	73, 813
EcoT38I	GRGCYC	1 cut(s)	677
ErhI	CCWWGG	2 cut(s)	405, 600
FaeI	CATG	5 cut(s)	75, 275, 350, 436, 822
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	2 cut(s)	119, 357
FatI	CATG	5 cut(s)	71, 271, 346, 432, 818
FauNDI	CATATG	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	255, 258
FokI	GGATG	3 cut(s)	178, 504, 617
FriOI	GRGCYC	1 cut(s)	677
Fsp4HI	GCNGC	2 cut(s)	255, 258
FspBI	CTAG	2 cut(s)	218, 326
FspI	TGCGCA	1 cut(s)	459
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	2 cut(s)	255, 258
HaeIII	GGCC	3 cut(s)	236, 404, 625
HapII	CCGG	1 cut(s)	96
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	5 cut(s)	75, 275, 350, 436, 822
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HincII	GTYRAC	2 cut(s)	310, 654
HindII	GTYRAC	2 cut(s)	310, 654
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	2 cut(s)	99, 518
HpaI	GTTAAC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	5 cut(s)	208, 310, 571, 641, 654
Hpy188I	TCNGA	2 cut(s)	556, 668
Hpy188III	TCNNGA	4 cut(s)	51, 179, 218, 317
Hpy8I	GTNNAC	5 cut(s)	208, 310, 571, 641, 654
HpyAV	CCTTC	1 cut(s)	654
HpyCH4III	ACNGT	4 cut(s)	197, 205, 575, 658
HpyCH4IV	ACGT	2 cut(s)	465, 695
HpyCH4V	TGCA	8 cut(s)	71, 124, 368, 441, 495, 501, 571, 811
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 734
HpyF3I	CTNAG	1 cut(s)	665
HpySE526I	ACGT	2 cut(s)	465, 695
Hsp92II	CATG	5 cut(s)	75, 275, 350, 436, 822
HspAI	GCGC	1 cut(s)	458
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	40, 268, 353, 394
Lsp1109I	GCAGC	2 cut(s)	241, 244
LweI	GCATC	8 cut(s)	377, 386, 472, 482, 715, 724, 766, 798
MaeI	CTAG	2 cut(s)	218, 326
MaeII	ACGT	2 cut(s)	465, 695
MaeIII	GTNAC	2 cut(s)	91, 428
MalI	GATC	4 cut(s)	42, 270, 355, 396
MboI	GATC	4 cut(s)	40, 268, 353, 394
MboII	GAAGA	3 cut(s)	50, 302, 722
MfeI	CAATTG	1 cut(s)	496
MflI	RGATCY	2 cut(s)	40, 353
MhlI	GDGCHC	2 cut(s)	573, 677
MluCI	AATT	3 cut(s)	331, 496, 591
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	4 cut(s)	286, 684, 700, 801
Mph1103I	ATGCAT	2 cut(s)	73, 813
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	6 cut(s)	192, 263, 309, 338, 546, 590
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	496
MwoI	GCNNNNNNNGC	2 cut(s)	374, 734
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	4 cut(s)	40, 268, 353, 394
NlaIII	CATG	5 cut(s)	75, 275, 350, 436, 822
NlaIV	GGNNCC	2 cut(s)	107, 403
NmuCI	GTSAC	1 cut(s)	91
NsbI	TGCGCA	1 cut(s)	459
NsiI	ATGCAT	2 cut(s)	73, 813
NspI	RCATGY	3 cut(s)	75, 350, 436
PciI	ACATGT	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	518
PflMI	CCANNNNNTGG	1 cut(s)	632
PkrI	GCNGC	2 cut(s)	256, 259
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PscI	ACATGT	1 cut(s)	432
PshAI	GACNNNNGTC	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	590
PspN4I	GGNNCC	2 cut(s)	107, 403
PspPI	GGNCC	5 cut(s)	106, 235, 402, 623, 641
PstI	CTGCAG	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	40, 353
RsaI	GTAC	3 cut(s)	188, 660, 682
RsaNI	GTAC	3 cut(s)	187, 659, 681
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	6 cut(s)	192, 263, 309, 338, 546, 590
SatI	GCNGC	2 cut(s)	255, 258
Sau3AI	GATC	4 cut(s)	40, 268, 353, 394
Sau96I	GGNCC	5 cut(s)	106, 235, 402, 623, 641
SchI	GAGTC	1 cut(s)	108
SduI	GDGCHC	2 cut(s)	573, 677
SfaNI	GCATC	8 cut(s)	377, 386, 472, 482, 715, 724, 766, 798
SfcI	CTRYAG	1 cut(s)	122
SinI	GGWCC	2 cut(s)	106, 641
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	3 cut(s)	331, 496, 591
SspMI	CTAG	2 cut(s)	218, 326
StyI	CCWWGG	2 cut(s)	405, 600
TaaI	ACNGT	4 cut(s)	197, 205, 575, 658
TaiI	ACGT	2 cut(s)	468, 698
TasI	AATT	3 cut(s)	331, 496, 591
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	6 cut(s)	192, 263, 309, 338, 546, 590
Tru9I	TTAA	6 cut(s)	192, 263, 309, 338, 546, 590
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	2 cut(s)	254, 257
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	4 cut(s)	17, 174, 182, 243
TspRI	CASTG	1 cut(s)	493
Van91I	CCANNNNNTGG	1 cut(s)	632
VneI	GTGCAC	1 cut(s)	569
VpaK11BI	GGWCC	2 cut(s)	106, 641
VspI	ATTAAT	1 cut(s)	590
XagI	CCTNNNNNAGG	1 cut(s)	688
XbaI	TCTAGA	1 cut(s)	217
XceI	RCATGY	3 cut(s)	75, 350, 436
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	2 cut(s)	218, 326
Zsp2I	ATGCAT	2 cut(s)	73, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.