Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

2916923 .. 2919241

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022530

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTGAACCAGTTGGTGTGCGAGGACTTAACTGGGGGTCTAGAAAATATTGCCATTCTAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTCCTACAGGTTACACGTATTGCAAGTCTAATCAAGTTGCGCAAAATGTGAAGCTTCCCAGAGATGCCACTGGATGCAACTGCAAAGGAAGTTGTGTAGATTCCAAGACCTGCCAATGTGCCAAACTTAACGGCTCTGACTTTCCATATGTGCACCGTGATGGTGGCAGATTAATTGAAGCCAAGACGGGGCTCAAGTACAGATTTGAGGTTGTGTTTCACTACAGCTATTTTGGATGTCTTGCAAATACTGTTGTCAAGAGGATGTTGAAAATGGAGGAAGACAGACCAGATGATGCCTGTGATGCCTACCATACATATTTTGGTGTAGCAGGGCCTTCCCTCCTTGAATATCAAATGGTGAAACCCACAAGTCCAGCCTATGCTTTGCCAGTTGATGTTGTAAATATGGTTATCTTAGCAAGCATAAAGGAGTTAAGGCTTAAAGCTGCTGGTGCATTGTTTTCACTTATTTGTGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

192

Amino Acids

20.89

Weight (kDa)

5.91

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-SET	PF05033	13 - 87	3e-09	Pre-SET motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	209
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	279
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	269, 361, 440
AluBI	AGCT	4 cut(s)	62, 145, 318, 539
AluI	AGCT	4 cut(s)	62, 145, 318, 539
Alw21I	GWGCWC	1 cut(s)	246
Alw44I	GTGCAC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	425
ApaLI	GTGCAC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	539
AseI	ATTAAT	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	2 cut(s)	16, 463
AsuNHI	GCTAGC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BfaI	CTAG	3 cut(s)	41, 59, 63
BfmI	CTRYAG	2 cut(s)	96, 313
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	425
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	4 cut(s)	145, 155, 376, 385
BmtI	GCTAGC	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	4 cut(s)	10, 37, 166, 482
BseGI	GGATG	3 cut(s)	170, 332, 360
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseNI	ACTGG	4 cut(s)	10, 37, 166, 482
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	526
BshFI	GGCC	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	279
BsnI	GGCC	1 cut(s)	427
Bsp1286I	GDGCHC	2 cut(s)	246, 285
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	209
BspOI	GCTAGC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	74
BsrI	ACTGG	4 cut(s)	10, 37, 166, 482
BssMI	GATC	1 cut(s)	79
Bst4CI	ACNGT	2 cut(s)	248, 343
BstBAI	YACGTR	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	64, 514
BstDEI	CTNAG	1 cut(s)	508
BstF5I	GGATG	3 cut(s)	170, 332, 360
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 395, 545
BstSFI	CTRYAG	2 cut(s)	96, 313
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	526
BstV2I	GAAGAC	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	427
BtsCI	GGATG	3 cut(s)	170, 332, 360
BtsIMutI	CAGTG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	64, 514
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	289
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	508
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	285
FaiI	YATR	7 cut(s)	238, 240, 405, 409, 474, 500, 518
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	3 cut(s)	177, 339, 367
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	540
FspBI	CTAG	3 cut(s)	41, 59, 63
FspI	TGCGCA	1 cut(s)	132
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	427
HhaI	GCGC	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	2 cut(s)	16, 463
Hpy166II	GTNNAC	2 cut(s)	7, 244
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	41, 349
Hpy8I	GTNNAC	2 cut(s)	7, 244
HpyAV	CCTTC	1 cut(s)	438
HpyCH4III	ACNGT	2 cut(s)	248, 343
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	6 cut(s)	114, 168, 174, 244, 335, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 395, 545
HpyF3I	CTNAG	1 cut(s)	508
HpySE526I	ACGT	1 cut(s)	107
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	4 cut(s)	145, 155, 376, 385
MaeI	CTAG	3 cut(s)	41, 59, 63
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	1 cut(s)	383
MhlI	GDGCHC	2 cut(s)	246, 285
MluCI	AATT	2 cut(s)	67, 264
MnlI	CCTC	6 cut(s)	16, 292, 345, 361, 443, 562
MseI	TTAA	5 cut(s)	29, 219, 263, 527, 534
MslI	CAYNNNNRTG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	59, 395, 545
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	1 cut(s)	79
NheI	GCTAGC	1 cut(s)	62
NsbI	TGCGCA	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	541
Ppu21I	YACGTR	1 cut(s)	108
PshBI	ATTAAT	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	425
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	5 cut(s)	29, 219, 263, 527, 534
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	425
SduI	GDGCHC	2 cut(s)	246, 285
SetI	ASST	9 cut(s)	64, 103, 110, 147, 203, 303, 320, 541, 573
SfaNI	GCATC	4 cut(s)	145, 155, 376, 385
SfcI	CTRYAG	2 cut(s)	96, 313
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	67, 264
SsiI	CCGC	1 cut(s)	83
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	3 cut(s)	41, 59, 63
TaaI	ACNGT	2 cut(s)	248, 343
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	67, 264
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	5 cut(s)	29, 219, 263, 527, 534
Tru9I	TTAA	5 cut(s)	29, 219, 263, 527, 534
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	1 cut(s)	539
TspRI	CASTG	1 cut(s)	166
VneI	GTGCAC	1 cut(s)	242
VspI	ATTAAT	1 cut(s)	263
XbaI	TCTAGA	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XspI	CTAG	3 cut(s)	41, 59, 63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.