MD16G1031500.v1.1

tetratricopeptide repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
2236039 .. 2240004
3966 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1031500.v1.1.491

Sequence Viewer

Length: 1257 bp
ATGAGCAGTCGAGCAGTGGAAGACGACGCACTGGCCAAAGCCGCAAGAGCTGCCGAAGCTCTTTACCTCCTCCGAGACACCTACTTTCCGGCCGACCCGGATGACAAAATCTCCAGATTAAACGCCGATTCCGATCTTGCCCTCAACCTCCTCGATTCCATTCCTCTTGAGCAAAGAAAACATCCGGCTCAACGTGCGAAATATGAATATCTGAGAGGAAAGATACTGGATGTTTTACCGAATTATAGAAAAGAAGCAGAGGATCATCTCTCAAAAGCTGTTAAGTTGAATCCATCTCTTGCAGATGCTTGGCTATGTTTAGGTAACTGCATTTGGAAGAAGGGAGATCTATCTTCAGCCAAGAACTGCTTTACTCTTGCCCTAAGCAAGGGTCCAAACAGGCAGATACTTTGTCAACTTTCGATGCTTGAAAGAAAAATGGCTCAAGGTACCGACAATGAGGCAGAACTTGTTGATGAAAGCATTCAACATGCCAAGGAAGCCGTAACTCTTGATGTCAAGGATGGGAATTCATGGTACAATCTTGGAAATGCATGTCTTACAAGTTTTTTTGTGACTGGAGCTTGGGACCATTCCAAACTTCTGCAATCTTTGAAGGCATACCAAAATGCTGAAAAGGATGAAAGAATGCAGTCCAATCCAGACCTATATTTTAACTGTGCCACTGTAAACAGATATCTGGAAAACTATGAAAGGGCCCTTTCTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACAGAGGAGGTTCAAAAGATTGTTAGCCTTCTTGACAGGCTGGATAATCTGTTAAGGGGGCATGCTAGATCTAAACGACTTCTGTCTTTAGCATCATCTCCGGCTGGTGTAAACTTGAACTCCTCATATCAAAGAGCTACTGTAGATATTCTATCAGAGGGTCTGAACAAATCAGTAGCACTAGTGGGAAAAGTGCTATTCTTTATTAAGCATGACAACGTTGCTCCACTGTACTACTTGGCATGCGATTCAAATCAAATATGCTTTGTTGTGTCAGTTTATGGCATTCAATATGATTCGATCAAAGAAGGAGATCAGCTAACAATACTGGAACCTTTTCATCGGCGTTTCAAGTTTTCTTGGAAAGAAAAGTTCTACGACTTCAAATCATTTCGTGTGGATTTCATAGAACAGTTGCTTGTGAACGGAAAGGCCCTTACTCCTCACCAAGCTGTCCGTACCTCAATTTATGCACAGCACAAACCATGA

Protein Analysis

419

Amino Acids

47.1

Weight (kDa)

7.1

Isoelectric Point (pI)

31.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TTC5_OB PF16669 298 - 410 3.1e-37 Tetratricopeptide repeat protein 5 OB fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 449
AccB1I GGYRCC 1 cut(s) 449
AciI CCGC 1 cut(s) 42
AclI AACGTT 1 cut(s) 987
AclWI GGATC 3 cut(s) 270, 746, 759
AcoI YGGCCR 2 cut(s) 33, 90
AcsI RAATTY 1 cut(s) 529
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 4 cut(s) 451, 539, 1001, 1228
AfiI CCNNNNNNNGG 1 cut(s) 388
AhlI ACTAGT 1 cut(s) 949
AjnI CCWGG 1 cut(s) 754
AluBI AGCT 8 cut(s) 50, 59, 278, 584, 737, 905, 1087, 1220
AluI AGCT 8 cut(s) 50, 59, 278, 584, 737, 905, 1087, 1220
Alw26I GTCTC 2 cut(s) 69, 764
AlwI GGATC 3 cut(s) 270, 746, 759
AoxI GGCC 4 cut(s) 33, 90, 717, 1200
ApaI GGGCCC 1 cut(s) 721
ApeKI GCWGC 3 cut(s) 50, 737, 740
ApoI RAATTY 1 cut(s) 529
Asp700I GAANNNNTTC 2 cut(s) 483, 1104
Asp718I GGTACC 1 cut(s) 449
AspS9I GGNCC 5 cut(s) 392, 589, 717, 718, 1201
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 1205
AvaII GGWCC 2 cut(s) 392, 589
BaeGI GKGCMC 1 cut(s) 721
BalI TGGCCA 1 cut(s) 35
BamHI GGATCC 1 cut(s) 751
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 721
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 3 cut(s) 37, 724, 727
BccI CCATC 2 cut(s) 301, 518
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 1 cut(s) 756
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 69, 764
BcuI ACTAGT 1 cut(s) 949
BfaI CTAG 2 cut(s) 834, 950
BfmI CTRYAG 2 cut(s) 768, 909
BglII AGATCT 2 cut(s) 346, 836
BisI GCNGC 4 cut(s) 42, 51, 738, 741
BlsI GCNGC 4 cut(s) 43, 52, 739, 742
Bme1390I CCNGG 2 cut(s) 98, 756
Bme18I GGWCC 2 cut(s) 392, 589
BmgT120I GGNCC 5 cut(s) 392, 589, 717, 718, 1201
BmiI GGNNCC 6 cut(s) 393, 451, 590, 719, 753, 1101
BmrFI CCNGG 2 cut(s) 98, 756
BmsI GCATC 3 cut(s) 295, 414, 869
BoxI GACNNNNGTC 1 cut(s) 850
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 2 cut(s) 97, 600
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 2 cut(s) 188, 429
BpuMI CCSGG 1 cut(s) 98
BsaBI GATNNNNATC 2 cut(s) 132, 1020
BsaI GGTCTC 1 cut(s) 764
BsaJI CCNNGG 1 cut(s) 495
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 872, 902
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse1I ACTGG 4 cut(s) 36, 231, 583, 1101
Bse8I GATNNNNATC 2 cut(s) 132, 1020
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 5 cut(s) 106, 181, 235, 529, 646
BseJI GATNNNNATC 2 cut(s) 132, 1020
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 4 cut(s) 36, 231, 583, 1101
BseRI GAGGAG 5 cut(s) 59, 140, 788, 880, 1200
BseSI GKGCMC 1 cut(s) 721
BseX3I CGGCCG 1 cut(s) 90
BseXI GCAGC 3 cut(s) 37, 724, 727
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 4 cut(s) 35, 92, 719, 1202
BshNI GGYRCC 1 cut(s) 449
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 4 cut(s) 89, 98, 185, 869
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 2 cut(s) 69, 764
BsmFI GGGAC 1 cut(s) 602
BsmI GAATGC 3 cut(s) 483, 654, 1053
BsnI GGCC 4 cut(s) 35, 92, 719, 1202
Bso31I GGTCTC 1 cut(s) 764
Bsp120I GGGCCC 1 cut(s) 717
Bsp1286I GDGCHC 1 cut(s) 721
Bsp143I GATC 7 cut(s) 133, 262, 346, 751, 836, 1068, 1081
BspACI CCGC 1 cut(s) 42
BspANI GGCC 4 cut(s) 35, 92, 719, 1202
BspCNI CTCAG 1 cut(s) 204
BspLI GGNNCC 6 cut(s) 393, 451, 590, 719, 753, 1101
BspPI GGATC 3 cut(s) 270, 746, 759
BspT107I GGYRCC 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 764
BsrI ACTGG 4 cut(s) 36, 231, 583, 1101
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 7 cut(s) 133, 262, 346, 751, 836, 1068, 1081
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 5 cut(s) 680, 688, 910, 999, 1182
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 831, 1012
BstDEI CTNAG 2 cut(s) 212, 383
BstENI CCTNNNNNAGG 1 cut(s) 386
BstF5I GGATG 5 cut(s) 106, 181, 235, 529, 646
BstKTI GATC 7 cut(s) 136, 265, 349, 754, 839, 1071, 1084
BstMAI GTCTC 2 cut(s) 69, 764
BstMBI GATC 7 cut(s) 133, 262, 346, 751, 836, 1068, 1081
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 6 cut(s) 41, 47, 50, 56, 194, 500
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 4 cut(s) 494, 558, 833, 1014
BstPAI GACNNNNGTC 1 cut(s) 850
BstSCI CCNGG 2 cut(s) 96, 754
BstSFI CTRYAG 2 cut(s) 768, 909
BstSLI GKGCMC 1 cut(s) 721
BstV1I GCAGC 3 cut(s) 37, 724, 727
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 3 cut(s) 346, 751, 836
BstYI RGATCY 3 cut(s) 346, 751, 836
BstZI CGGCCG 1 cut(s) 90
BsuRI GGCC 4 cut(s) 35, 92, 719, 1202
BtsCI GGATG 5 cut(s) 106, 181, 235, 529, 646
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 4 cut(s) 21, 29, 684, 995
Cac8I GCNNGC 2 cut(s) 831, 1012
Cfr13I GGNCC 5 cut(s) 392, 589, 717, 718, 1201
CseI GACGC 1 cut(s) 35
Csp6I GTAC 4 cut(s) 450, 538, 1000, 1227
CviAII CATG 7 cut(s) 491, 534, 555, 830, 980, 1011, 1254
CviQI GTAC 4 cut(s) 450, 538, 1000, 1227
DdeI CTNAG 2 cut(s) 212, 383
DpnI GATC 7 cut(s) 135, 264, 348, 753, 838, 1070, 1083
DpnII GATC 7 cut(s) 133, 262, 346, 751, 836, 1068, 1081
DraI TTTAAA 1 cut(s) 747
EaeI YGGCCR 2 cut(s) 33, 90
EagI CGGCCG 1 cut(s) 90
EclXI CGGCCG 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 721
Eco31I GGTCTC 1 cut(s) 764
Eco32I GATATC 1 cut(s) 698
Eco47I GGWCC 2 cut(s) 392, 589
Eco52I CGGCCG 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 339
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoO109I RGGNCCY 3 cut(s) 717, 718, 1201
EcoRI GAATTC 1 cut(s) 529
EcoRII CCWGG 1 cut(s) 754
EcoRV GATATC 1 cut(s) 698
EcoT14I CCWWGG 1 cut(s) 495
EcoT22I ATGCAT 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 721
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 7 cut(s) 494, 537, 558, 833, 983, 1014, 1257
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 1 cut(s) 602
FatI CATG 7 cut(s) 490, 533, 554, 829, 979, 1010, 1253
Fnu4HI GCNGC 4 cut(s) 42, 51, 738, 741
FokI GGATG 5 cut(s) 113, 168, 242, 536, 653
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 4 cut(s) 42, 51, 738, 741
FspBI CTAG 2 cut(s) 834, 950
GluI GCNGC 4 cut(s) 42, 51, 738, 741
GsuI CTGGAG 2 cut(s) 97, 600
HaeIII GGCC 4 cut(s) 35, 92, 719, 1202
HapII CCGG 4 cut(s) 89, 98, 185, 869
HgaI GACGC 1 cut(s) 35
Hin1II CATG 7 cut(s) 494, 537, 558, 833, 983, 1014, 1257
HincII GTYRAC 1 cut(s) 416
HindII GTYRAC 1 cut(s) 416
HinfI GANTC 5 cut(s) 128, 155, 289, 1016, 1064
HpaII CCGG 4 cut(s) 89, 98, 185, 869
HphI GGTGA 1 cut(s) 1205
Hpy166II GTNNAC 4 cut(s) 416, 691, 880, 1192
Hpy188I TCNGA 5 cut(s) 74, 133, 213, 925, 933
Hpy188III TCNNGA 7 cut(s) 114, 167, 512, 662, 701, 726, 800
Hpy8I GTNNAC 4 cut(s) 416, 691, 880, 1192
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 4 cut(s) 334, 610, 806, 1070
HpyCH4III ACNGT 5 cut(s) 680, 688, 910, 999, 1182
HpyCH4IV ACGT 2 cut(s) 193, 987
HpyCH4V TGCA 6 cut(s) 302, 330, 554, 607, 652, 1241
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 47, 50, 56, 194, 500
HpyF3I CTNAG 2 cut(s) 212, 383
HpySE526I ACGT 2 cut(s) 193, 987
Hsp92II CATG 7 cut(s) 494, 537, 558, 833, 983, 1014, 1257
KpnI GGTACC 1 cut(s) 453
Kzo9I GATC 7 cut(s) 133, 262, 346, 751, 836, 1068, 1081
LmnI GCTCC 2 cut(s) 581, 997
Lsp1109I GCAGC 3 cut(s) 37, 724, 727
LweI GCATC 3 cut(s) 295, 414, 869
MaeI CTAG 2 cut(s) 834, 950
MaeII ACGT 2 cut(s) 193, 987
MaeIII GTNAC 3 cut(s) 323, 505, 574
MalI GATC 7 cut(s) 135, 264, 348, 753, 838, 1070, 1083
MboI GATC 7 cut(s) 133, 262, 346, 751, 836, 1068, 1081
MboII GAAGA 3 cut(s) 32, 345, 349
MflI RGATCY 3 cut(s) 346, 751, 836
MhlI GDGCHC 1 cut(s) 721
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 3 cut(s) 241, 529, 1233
MluNI TGGCCA 1 cut(s) 35
Mox20I TGGCCA 1 cut(s) 35
Mph1103I ATGCAT 1 cut(s) 556
MroXI GAANNNNTTC 2 cut(s) 483, 1104
MscI TGGCCA 1 cut(s) 35
MseI TTAA 6 cut(s) 119, 282, 675, 746, 821, 975
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 4 cut(s) 89, 98, 185, 869
MspR9I CCNGG 2 cut(s) 98, 756
Mva1269I GAATGC 3 cut(s) 483, 654, 1053
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 6 cut(s) 41, 47, 50, 56, 194, 500
NciI CCSGG 1 cut(s) 98
NdeII GATC 7 cut(s) 133, 262, 346, 751, 836, 1068, 1081
NlaIII CATG 7 cut(s) 494, 537, 558, 833, 983, 1014, 1257
NlaIV GGNNCC 6 cut(s) 393, 451, 590, 719, 753, 1101
NmuCI GTSAC 1 cut(s) 574
NsiI ATGCAT 1 cut(s) 556
NspI RCATGY 4 cut(s) 494, 558, 833, 1014
PaeI GCATGC 2 cut(s) 833, 1014
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PctI GAATGC 3 cut(s) 483, 654, 1053
PdmI GAANNNNTTC 2 cut(s) 483, 1104
PfeI GAWTC 5 cut(s) 128, 155, 289, 1016, 1064
PkrI GCNGC 4 cut(s) 43, 52, 739, 742
PshAI GACNNNNGTC 1 cut(s) 850
Psp1406I AACGTT 1 cut(s) 987
Psp6I CCWGG 1 cut(s) 754
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 6 cut(s) 393, 451, 590, 719, 753, 1101
PspOMI GGGCCC 1 cut(s) 717
PspPI GGNCC 5 cut(s) 392, 589, 717, 718, 1201
PsuI RGATCY 3 cut(s) 346, 751, 836
RsaI GTAC 4 cut(s) 451, 539, 1001, 1228
RsaNI GTAC 4 cut(s) 450, 538, 1000, 1227
SaqAI TTAA 6 cut(s) 119, 282, 675, 746, 821, 975
SatI GCNGC 4 cut(s) 42, 51, 738, 741
Sau3AI GATC 7 cut(s) 133, 262, 346, 751, 836, 1068, 1081
Sau96I GGNCC 5 cut(s) 392, 589, 717, 718, 1201
ScrFI CCNGG 2 cut(s) 98, 756
SduI GDGCHC 1 cut(s) 721
SfaNI GCATC 3 cut(s) 295, 414, 869
SfcI CTRYAG 2 cut(s) 768, 909
SinI GGWCC 2 cut(s) 392, 589
SmlI CTYRAG 2 cut(s) 167, 444
SmoI CTYRAG 2 cut(s) 167, 444
SpeI ACTAGT 1 cut(s) 949
SphI GCATGC 2 cut(s) 833, 1014
Sse9I AATT 3 cut(s) 241, 529, 1233
SsiI CCGC 1 cut(s) 42
SspMI CTAG 2 cut(s) 834, 950
StyD4I CCNGG 2 cut(s) 96, 754
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 5 cut(s) 680, 688, 910, 999, 1182
TaiI ACGT 2 cut(s) 196, 990
TaqI TCGA 4 cut(s) 10, 153, 422, 1067
TasI AATT 3 cut(s) 241, 529, 1233
TatI WGTACW 1 cut(s) 999
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 5 cut(s) 128, 155, 289, 1016, 1064
Tru1I TTAA 6 cut(s) 119, 282, 675, 746, 821, 975
Tru9I TTAA 6 cut(s) 119, 282, 675, 746, 821, 975
TscAI CASTG 4 cut(s) 21, 36, 691, 1002
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 3 cut(s) 50, 737, 740
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 7 cut(s) 219, 492, 522, 657, 726, 1097, 1162
TspGWI ACGGA 2 cut(s) 1209, 1214
TspRI CASTG 4 cut(s) 21, 36, 691, 1002
VpaK11BI GGWCC 2 cut(s) 392, 589
XagI CCTNNNNNAGG 1 cut(s) 386
XapI RAATTY 1 cut(s) 529
XceI RCATGY 4 cut(s) 494, 558, 833, 1014
XmnI GAANNNNTTC 2 cut(s) 483, 1104
XspI CTAG 2 cut(s) 834, 950
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.