Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

69257627 .. 69261952

Gene Structure 4326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG399500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGACTTAAAGACGGGAAAACGGTTTGGAGATGGAGTCATGCCTGGATTCAATTTGTTAATGGACATGTACCACAATCTATATCAGAAATACGAGGGTTACACGTATTGCAAGTCTATTCAAGTTGGGCAAAACGTGAAGCTTCCCAGAGATGCCACTGGATGCAATTGCAAAGAAAGTTGTGTAGATTCCAAGACCTGCCAATGTGCCAAACTTAACGGCTCTGACTTTCCATATGTGCACCGTGATGGTGGCAGATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGGTTGTGGACCTTTTGTGTCAACCGTACTTCTCAGACGGGGCTCAAGTACCGATTTGAGTAGAGAACCTGAAGTGAACTATCCCAGGGTGAGAGATCTTGCTGATAGAGTCAAGCAAAATAACTTAAGGATGTTAAAGTTCTATTTGACGATTTTTATCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

155

Amino Acids

17.57

Weight (kDa)

8.84

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-SET	PF05033	30 - 104	2.5e-12	Pre-SET motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	3 cut(s)	71, 330, 352
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflII	CTTAAG	1 cut(s)	427
AflIII	ACRYGT	2 cut(s)	66, 102
AgsI	TTSAA	4 cut(s)	52, 122, 266, 287
AjnI	CCWGG	2 cut(s)	43, 386
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	243
Alw44I	GTGCAC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	293
ApaLI	GTGCAC	1 cut(s)	239
AseI	ATTAAT	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	293, 311
AsuHPI	GGTGA	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	243
BccI	CCATC	2 cut(s)	26, 242
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	2 cut(s)	45, 388
BfaI	CTAG	1 cut(s)	466
BfrI	CTTAAG	1 cut(s)	427
BfuAI	ACCTGC	1 cut(s)	206
BglII	AGATCT	1 cut(s)	397
Bme1390I	CCNGG	2 cut(s)	45, 388
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	293, 311
BmrFI	CCNGG	2 cut(s)	45, 388
BmsI	GCATC	2 cut(s)	142, 152
BpuEI	CTTGAG	1 cut(s)	331
BsaAI	YACGTR	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	270, 386, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	458
BseBI	CCWGG	2 cut(s)	45, 388
BseDI	CCNNGG	3 cut(s)	270, 386, 387
BseGI	GGATG	3 cut(s)	167, 280, 438
BseJI	GATNNNNATC	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	349
BseNI	ACTGG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	243
BshFI	GGCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	302
BsnI	GGCC	1 cut(s)	295
Bsp1286I	GDGCHC	2 cut(s)	243, 347
Bsp143I	GATC	1 cut(s)	397
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	206
BspTI	CTTAAG	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	3 cut(s)	270, 386, 387
BssMI	GATC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	45, 388
Bst4CI	ACNGT	3 cut(s)	24, 245, 328
BstAFI	CTTAAG	1 cut(s)	427
BstBAI	YACGTR	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	167, 280, 438
BstKTI	GATC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	397
BstNI	CCWGG	2 cut(s)	45, 388
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	43, 386
BstSLI	GKGCMC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	295
BtsCI	GGATG	3 cut(s)	167, 280, 438
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	293, 311
Csp6I	GTAC	3 cut(s)	70, 329, 351
CviAII	CATG	2 cut(s)	40, 67
CviJI	RGCY	5 cut(s)	142, 222, 269, 295, 345
CviKI_1	RGCY	5 cut(s)	142, 222, 269, 295, 345
CviQI	GTAC	3 cut(s)	70, 329, 351
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	393
EcoRII	CCWGG	2 cut(s)	43, 386
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	43, 70
FaiI	YATR	5 cut(s)	41, 68, 82, 235, 237
FatI	CATG	2 cut(s)	39, 66
FauNDI	CATATG	1 cut(s)	235
FokI	GGATG	3 cut(s)	174, 287, 445
FriOI	GRGCYC	1 cut(s)	347
FspBI	CTAG	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	43, 70
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	4 cut(s)	36, 48, 188, 411
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	4 cut(s)	241, 311, 324, 379
Hpy188I	TCNGA	3 cut(s)	87, 226, 338
Hpy8I	GTNNAC	4 cut(s)	241, 311, 324, 379
HpyCH4III	ACNGT	3 cut(s)	24, 245, 328
HpyCH4IV	ACGT	2 cut(s)	104, 135
HpyCH4V	TGCA	4 cut(s)	111, 165, 171, 241
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	2 cut(s)	104, 135
Hsp92II	CATG	2 cut(s)	43, 70
Kzo9I	GATC	1 cut(s)	397
LpnPI	CCDG	8 cut(s)	30, 57, 144, 160, 211, 373, 384, 400
LweI	GCATC	2 cut(s)	142, 152
MaeI	CTAG	1 cut(s)	466
MaeII	ACGT	2 cut(s)	104, 135
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MfeI	CAATTG	1 cut(s)	166
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	2 cut(s)	243, 347
MluCI	AATT	3 cut(s)	52, 166, 261
MlyI	GAGTC	2 cut(s)	45, 420
MnlI	CCTC	1 cut(s)	88
MseI	TTAA	6 cut(s)	8, 59, 216, 260, 428, 437
MslI	CAYNNNNRTG	1 cut(s)	246
MspCI	CTTAAG	1 cut(s)	427
MspR9I	CCNGG	2 cut(s)	45, 388
MunI	CAATTG	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	45, 388
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	2 cut(s)	43, 70
NspI	RCATGY	1 cut(s)	70
PasI	CCCWGGG	1 cut(s)	387
PciI	ACATGT	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	48, 188
PflMI	CCANNNNNTGG	1 cut(s)	302
PleI	GAGTC	2 cut(s)	44, 419
PpsI	GAGTC	2 cut(s)	44, 419
Ppu21I	YACGTR	1 cut(s)	105
PscI	ACATGT	1 cut(s)	66
PshBI	ATTAAT	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	43, 386
PspGI	CCWGG	2 cut(s)	43, 386
PspPI	GGNCC	2 cut(s)	293, 311
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	3 cut(s)	71, 330, 352
RsaNI	GTAC	3 cut(s)	70, 329, 351
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	6 cut(s)	8, 59, 216, 260, 428, 437
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	2 cut(s)	293, 311
SchI	GAGTC	2 cut(s)	45, 420
ScrFI	CCNGG	2 cut(s)	45, 388
SduI	GDGCHC	2 cut(s)	243, 347
SetI	ASST	6 cut(s)	107, 138, 144, 200, 316, 373
SfaNI	GCATC	2 cut(s)	142, 152
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	346, 427
SmoI	CTYRAG	2 cut(s)	346, 427
Sse9I	AATT	3 cut(s)	52, 166, 261
SspMI	CTAG	1 cut(s)	466
StyD4I	CCNGG	2 cut(s)	43, 386
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	24, 245, 328
TaiI	ACGT	2 cut(s)	107, 138
TasI	AATT	3 cut(s)	52, 166, 261
TfiI	GAWTC	2 cut(s)	48, 188
Tru1I	TTAA	6 cut(s)	8, 59, 216, 260, 428, 437
Tru9I	TTAA	6 cut(s)	8, 59, 216, 260, 428, 437
TscAI	CASTG	1 cut(s)	163
TspRI	CASTG	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	302
Vha464I	CTTAAG	1 cut(s)	427
VneI	GTGCAC	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	311
VspI	ATTAAT	1 cut(s)	260
XceI	RCATGY	1 cut(s)	70
XspI	CTAG	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.