Rroxscaffold_6G00389040

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
2411221 .. 2415187
3967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389040.1

Sequence Viewer

Length: 222 bp
ATGGTTGGTGTGCGAGGCAATAGCGGGAGTCTAGAGGATATTGCCATTCCGGCTAGCAATTTGGTCGATGATCCGCTTTGTTGCTCCTACGGGTTACACGTATTGCAAGTCTATTCAAGTTGCGCAAAACGTGAAGCTTCCCGAGAGATGCCACCGGATGTAATTGCAAAGGAAGTTTTTTTGTGCCGAGTCTACAGATTAGTTGAGGTCGGGCGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.96

Weight (kDa)

5.68

Isoelectric Point (pI)

27.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 124
AccI GTMKAC 1 cut(s) 192
AciI CCGC 2 cut(s) 24, 74
AclWI GGATC 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 1 cut(s) 117
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwI GGATC 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 141
AspLEI GCGC 1 cut(s) 125
AsuNHI GCTAGC 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 141
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BfaI CTAG 2 cut(s) 32, 54
BfmI CTRYAG 1 cut(s) 193
BglI GCCNNNNNGGC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 141
BmsI GCATC 1 cut(s) 138
BmtI GCTAGC 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 154
BseGI GGATG 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 2 cut(s) 50, 155
BsoBI CYCGRG 1 cut(s) 141
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 2 cut(s) 24, 74
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 1 cut(s) 65
BssMI GATC 1 cut(s) 70
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 55, 216
BstF5I GGATG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 55, 216
CfoI GCGC 1 cut(s) 125
CviJI RGCY 2 cut(s) 53, 137
CviKI_1 RGCY 2 cut(s) 53, 137
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 141
FaiI YATR 1 cut(s) 220
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 1 cut(s) 192
FokI GGATG 1 cut(s) 170
FspBI CTAG 2 cut(s) 32, 54
FspI TGCGCA 1 cut(s) 124
GlaI GCGC 1 cut(s) 124
HapII CCGG 2 cut(s) 50, 155
HhaI GCGC 1 cut(s) 125
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 2 cut(s) 28, 189
HpaII CCGG 2 cut(s) 50, 155
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 32, 141
Hpy8I GTNNAC 1 cut(s) 193
HpyCH4IV ACGT 2 cut(s) 99, 130
HpyCH4V TGCA 3 cut(s) 106, 167, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpySE526I ACGT 2 cut(s) 99, 130
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 2 cut(s) 63, 168
LweI GCATC 1 cut(s) 138
MaeI CTAG 2 cut(s) 32, 54
MaeII ACGT 2 cut(s) 99, 130
MaeIII GTNAC 1 cut(s) 93
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MluCI AATT 2 cut(s) 58, 162
MlyI GAGTC 2 cut(s) 37, 198
MnlI CCTC 3 cut(s) 8, 28, 199
MspI CCGG 2 cut(s) 50, 155
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 1 cut(s) 70
NheI GCTAGC 1 cut(s) 53
NmeAIII GCCGAG 1 cut(s) 212
NsbI TGCGCA 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PleI GAGTC 2 cut(s) 36, 197
PpsI GAGTC 2 cut(s) 36, 197
Ppu21I YACGTR 1 cut(s) 100
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 2 cut(s) 37, 198
SetI ASST 4 cut(s) 102, 133, 139, 210
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 193
Sse9I AATT 2 cut(s) 58, 162
SsiI CCGC 2 cut(s) 24, 74
SspMI CTAG 2 cut(s) 32, 54
TaiI ACGT 2 cut(s) 102, 133
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 58, 162
XbaI TCTAGA 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 2 cut(s) 32, 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.