Rh6AG088100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000927
Physical Location & Seq
Forward (+)
13198071 .. 13199024
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG088100.1

Sequence Viewer

Length: 198 bp
ATGAGCTTCTCCGGCCCCAAAGATGACTCTATTGGCTTAAATCGGGCCTTCACTTTCCAGCACCGATGGAGCTCCAGGGAGAAGCCTTTTCTGTATGAAATTGTGGCAAATGGGCGTAATGGTTTGATTATCTTGTCCGTGACAGCCGAGATTGTGGACTGGGATGCAACTTTGAGTTTAAAAGGTTGGATGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.39

Weight (kDa)

6.53

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 2 cut(s) 6, 72
AluI AGCT 2 cut(s) 6, 72
Alw21I GWGCWC 1 cut(s) 74
AoxI GGCC 2 cut(s) 13, 45
AspS9I GGNCC 2 cut(s) 14, 45
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BccI CCATC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 14, 45
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 76
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 164
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 169, 195
BseNI ACTGG 1 cut(s) 164
BshFI GGCC 2 cut(s) 15, 47
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 12
BsnI GGCC 2 cut(s) 15, 47
Bsp1286I GDGCHC 1 cut(s) 74
BspANI GGCC 2 cut(s) 15, 47
BspLI GGNNCC 1 cut(s) 16
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 76
BstF5I GGATG 2 cut(s) 169, 195
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 74
BsuRI GGCC 2 cut(s) 15, 47
BtsCI GGATG 2 cut(s) 169, 195
Cfr13I GGNCC 2 cut(s) 14, 45
CviJI RGCY 7 cut(s) 6, 15, 36, 47, 72, 85, 146
CviKI_1 RGCY 7 cut(s) 6, 15, 36, 47, 72, 85, 146
DraI TTTAAA 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 74
Eco53kI GAGCTC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 74
FaiI YATR 1 cut(s) 96
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 58
HaeIII GGCC 2 cut(s) 15, 47
HapII CCGG 1 cut(s) 12
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 69, 77
LpnPI CCDG 5 cut(s) 25, 61, 71, 88, 145
LweI GCATC 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 1 cut(s) 99
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 167
MseI TTAA 2 cut(s) 38, 179
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 1 cut(s) 12
NlaIV GGNNCC 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 139
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 2 cut(s) 14, 45
SacI GAGCTC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 38, 179
Sau96I GGNCC 2 cut(s) 14, 45
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 1 cut(s) 74
SetI ASST 3 cut(s) 8, 74, 187
SfaNI GCATC 1 cut(s) 154
SgeI CNNG 9 cut(s) 24, 56, 70, 87, 88, 145, 151, 160, 172
Sse9I AATT 1 cut(s) 99
SstI GAGCTC 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 74
TasI AATT 1 cut(s) 99
Tru1I TTAA 2 cut(s) 38, 179
Tru9I TTAA 2 cut(s) 38, 179
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 111
TspGWI ACGGA 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.