Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

59820499 .. 59824071

Gene Structure 3573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21076

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGATGGTTGTTTTTGTGACCGGAGCCTGGGACCACGCCAAACTTCTGCAGTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGATAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACCGAAGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTTTTAAGGGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGGCTGTGGTAAATTGTTACATGTATTGCAAGTCTATTCAAGTTGCGCAAAACGTGAAGCTTCCTAGAGATGCCACTGGATGCAATTGCAAAGGAAGTTGTGTAGATTCCAAGACCTGCCAATGTGCCAAACTTAACGGCTCTGACTTTCCATATGTGCACTGTGATGGTGGCCGATTAATTGAAGCCAAAGATGTAGTGTTTGAATGTGGGCCAAAATGTGGTTGTGGACCTTCTGTGTCAACCGTACTTCTCAGACGGGGCTCAAGTACCGATTTGAGGTTGTGTTTCACTACAGCTATTTTGGATGTCTTGCAAATACTAATGTTAAGAGGTACTGGACTCTTCTTCACTGCATTTGCGCTTCATTTCAAGTGTGCTTCATGGACGTTGAAAATGGAGGAAGACAGACCAAATGATGCATGTGATGCCTACCATACATATTTTGGTGTAGCAGGACCTTCCCTCCTTGAATATCAAATGGTGAAACCCACAAGTCCAGCTTATGCTTTGCCAGTTGATGTTGTAAATATGGTTATCTTAGCAAGCATAAAAGAGTTAAGGCTTAAAGCTGCTGGTGCATTGTTTTCACTTATTTGTGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

305

Amino Acids

33.49

Weight (kDa)

7.82

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-SET	PF05033	108 - 180	5.2e-10	Pre-SET motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	357
Acc36I	ACCTGC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	530
AclWI	GGATC	2 cut(s)	188, 201
AcoI	YGGCCR	1 cut(s)	481
AfaI	GTAC	4 cut(s)	113, 558, 580, 646
AfiI	CCNNNNNNNGG	3 cut(s)	27, 530, 588
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	8 cut(s)	176, 224, 350, 494, 515, 682, 703, 782
AjnI	CCWGG	2 cut(s)	26, 196
AluBI	AGCT	6 cut(s)	179, 250, 370, 608, 812, 881
AluI	AGCT	6 cut(s)	179, 250, 370, 608, 812, 881
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	2 cut(s)	57, 206
Alw44I	GTGCAC	1 cut(s)	467
AlwI	GGATC	2 cut(s)	188, 201
AoxI	GGCC	3 cut(s)	159, 481, 521
ApaLI	GTGCAC	1 cut(s)	467
ApeKI	GCWGC	3 cut(s)	179, 182, 881
AseI	ATTAAT	1 cut(s)	488
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	2 cut(s)	358, 673
AspS9I	GGNCC	5 cut(s)	31, 160, 521, 539, 767
AsuHPI	GGTGA	1 cut(s)	805
AvaII	GGWCC	3 cut(s)	31, 539, 767
BaeGI	GKGCMC	1 cut(s)	471
BamHI	GGATCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	720
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	3 cut(s)	166, 169, 868
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	2 cut(s)	28, 198
BcoDI	GTCTC	2 cut(s)	57, 206
BfaI	CTAG	3 cut(s)	143, 251, 375
BfmI	CTRYAG	2 cut(s)	47, 603
BfuAI	ACCTGC	1 cut(s)	434
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	3 cut(s)	180, 183, 882
BlsI	GCNGC	3 cut(s)	181, 184, 883
Bme1390I	CCNGG	2 cut(s)	28, 198
Bme18I	GGWCC	3 cut(s)	31, 539, 767
BmgT120I	GGNCC	5 cut(s)	31, 160, 521, 539, 767
BmiI	GGNNCC	3 cut(s)	25, 32, 195
BmrFI	CCNGG	2 cut(s)	28, 198
BmsI	GCATC	6 cut(s)	302, 311, 370, 380, 718, 727
BpiI	GAAGAC	1 cut(s)	720
BpuEI	CTTGAG	1 cut(s)	559
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	20
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 530, 588
Bse1I	ACTGG	4 cut(s)	172, 391, 652, 824
BseBI	CCWGG	2 cut(s)	28, 198
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	3 cut(s)	96, 395, 622
BseLI	CCNNNNNNNGG	3 cut(s)	27, 530, 588
BseMII	CTCAG	1 cut(s)	577
BseNI	ACTGG	4 cut(s)	172, 391, 652, 824
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	3 cut(s)	166, 169, 868
BshFI	GGCC	3 cut(s)	161, 483, 523
BsiHKAI	GWGCWC	1 cut(s)	471
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	2 cut(s)	44, 282
BslI	CCNNNNNNNGG	3 cut(s)	27, 530, 588
BsmAI	GTCTC	2 cut(s)	57, 206
BsmFI	GGGAC	2 cut(s)	44, 282
BsnI	GGCC	3 cut(s)	161, 483, 523
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	471, 575
Bsp143I	GATC	2 cut(s)	193, 278
BspANI	GGCC	3 cut(s)	161, 483, 523
BspCNI	CTCAG	1 cut(s)	576
BspLI	GGNNCC	3 cut(s)	25, 32, 195
BspMAI	CTGCAG	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	434
BspPI	GGATC	2 cut(s)	188, 201
BspTNI	GGTCTC	1 cut(s)	206
BsrI	ACTGG	4 cut(s)	172, 391, 652, 824
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	193, 278
Bst2UI	CCWGG	2 cut(s)	28, 198
Bst4CI	ACNGT	4 cut(s)	122, 130, 473, 556
Bst6I	CTCTTC	2 cut(s)	210, 659
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	1 cut(s)	856
BstDEI	CTNAG	2 cut(s)	563, 850
BstF5I	GGATG	3 cut(s)	96, 395, 622
BstHHI	GCGC	2 cut(s)	358, 673
BstKTI	GATC	2 cut(s)	196, 281
BstMAI	GTCTC	2 cut(s)	57, 206
BstMBI	GATC	2 cut(s)	193, 278
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 737, 887
BstNI	CCWGG	2 cut(s)	28, 198
BstNSI	RCATGY	3 cut(s)	275, 334, 735
BstSCI	CCNGG	2 cut(s)	26, 196
BstSFI	CTRYAG	2 cut(s)	47, 603
BstSLI	GKGCMC	1 cut(s)	471
BstV1I	GCAGC	3 cut(s)	166, 169, 868
BstV2I	GAAGAC	1 cut(s)	720
BstX2I	RGATCY	2 cut(s)	193, 278
BstYI	RGATCY	2 cut(s)	193, 278
BsuRI	GGCC	3 cut(s)	161, 483, 523
BtsCI	GGATG	3 cut(s)	96, 395, 622
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	3 cut(s)	384, 469, 660
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	1 cut(s)	856
CfoI	GCGC	2 cut(s)	358, 673
Cfr13I	GGNCC	5 cut(s)	31, 160, 521, 539, 767
Csp6I	GTAC	4 cut(s)	112, 557, 579, 645
CviAII	CATG	4 cut(s)	272, 331, 693, 732
CviQI	GTAC	4 cut(s)	112, 557, 579, 645
DdeI	CTNAG	2 cut(s)	563, 850
DpnI	GATC	2 cut(s)	195, 280
DpnII	GATC	2 cut(s)	193, 278
DraI	TTTAAA	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	2 cut(s)	210, 659
EarI	CTCTTC	2 cut(s)	210, 659
Eco24I	GRGCYC	1 cut(s)	575
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	3 cut(s)	31, 539, 767
EcoO109I	RGGNCCY	1 cut(s)	767
EcoRII	CCWGG	2 cut(s)	26, 196
EcoT22I	ATGCAT	1 cut(s)	733
EcoT38I	GRGCYC	1 cut(s)	575
FaeI	CATG	4 cut(s)	275, 334, 696, 735
FalI	AAGNNNNNCTT	2 cut(s)	796, 828
FaqI	GGGAC	2 cut(s)	44, 282
FatI	CATG	4 cut(s)	271, 330, 692, 731
FauNDI	CATATG	1 cut(s)	463
Fnu4HI	GCNGC	3 cut(s)	180, 183, 882
FokI	GGATG	3 cut(s)	103, 402, 629
FriOI	GRGCYC	1 cut(s)	575
Fsp4HI	GCNGC	3 cut(s)	180, 183, 882
FspBI	CTAG	3 cut(s)	143, 251, 375
FspI	TGCGCA	1 cut(s)	357
GlaI	GCGC	2 cut(s)	357, 672
GluI	GCNGC	3 cut(s)	180, 183, 882
HaeIII	GGCC	3 cut(s)	161, 483, 523
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	2 cut(s)	358, 673
Hin1II	CATG	4 cut(s)	275, 334, 696, 735
Hin6I	GCGC	2 cut(s)	356, 671
HinP1I	GCGC	2 cut(s)	356, 671
HincII	GTYRAC	2 cut(s)	235, 552
HindII	GTYRAC	2 cut(s)	235, 552
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	416, 651
HpaI	GTTAAC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	805
Hpy166II	GTNNAC	5 cut(s)	133, 235, 469, 539, 552
Hpy188I	TCNGA	2 cut(s)	454, 566
Hpy188III	TCNNGA	3 cut(s)	104, 143, 242
Hpy8I	GTNNAC	5 cut(s)	133, 235, 469, 539, 552
HpyAV	CCTTC	3 cut(s)	248, 552, 780
HpyCH4III	ACNGT	4 cut(s)	122, 130, 473, 556
HpyCH4IV	ACGT	2 cut(s)	363, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 737, 887
HpyF3I	CTNAG	2 cut(s)	563, 850
HpySE526I	ACGT	2 cut(s)	363, 698
Hsp92II	CATG	4 cut(s)	275, 334, 696, 735
HspAI	GCGC	2 cut(s)	356, 671
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	193, 278
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	3 cut(s)	166, 169, 868
LweI	GCATC	6 cut(s)	302, 311, 370, 380, 718, 727
MaeI	CTAG	3 cut(s)	143, 251, 375
MaeII	ACGT	2 cut(s)	363, 698
MaeIII	GTNAC	2 cut(s)	16, 326
MalI	GATC	2 cut(s)	195, 280
MboI	GATC	2 cut(s)	193, 278
MboII	GAAGA	4 cut(s)	227, 646, 649, 725
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	2 cut(s)	193, 278
MhlI	GDGCHC	2 cut(s)	471, 575
MluCI	AATT	4 cut(s)	256, 322, 394, 489
MlyI	GAGTC	1 cut(s)	645
MnlI	CCTC	6 cut(s)	211, 582, 635, 703, 785, 904
Mph1103I	ATGCAT	1 cut(s)	733
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	9 cut(s)	117, 188, 234, 263, 444, 488, 638, 869, 876
MslI	CAYNNNNRTG	1 cut(s)	474
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	28, 198
MunI	CAATTG	1 cut(s)	394
MvaI	CCWGG	2 cut(s)	28, 198
MwoI	GCNNNNNNNGC	3 cut(s)	299, 737, 887
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	2 cut(s)	193, 278
NlaIII	CATG	4 cut(s)	275, 334, 696, 735
NlaIV	GGNNCC	3 cut(s)	25, 32, 195
NmuCI	GTSAC	1 cut(s)	16
NsbI	TGCGCA	1 cut(s)	357
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	3 cut(s)	275, 334, 735
PciI	ACATGT	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	416
PflMI	CCANNNNNTGG	1 cut(s)	530
PkrI	GCNGC	3 cut(s)	181, 184, 883
PleI	GAGTC	1 cut(s)	645
PpsI	GAGTC	1 cut(s)	645
PpuMI	RGGWCCY	1 cut(s)	767
PscI	ACATGT	1 cut(s)	330
PshBI	ATTAAT	1 cut(s)	488
Psp5II	RGGWCCY	1 cut(s)	767
Psp6I	CCWGG	2 cut(s)	26, 196
PspGI	CCWGG	2 cut(s)	26, 196
PspN4I	GGNNCC	3 cut(s)	25, 32, 195
PspPI	GGNCC	5 cut(s)	31, 160, 521, 539, 767
PspPPI	RGGWCCY	1 cut(s)	767
PstI	CTGCAG	1 cut(s)	51
PsuI	RGATCY	2 cut(s)	193, 278
RsaI	GTAC	4 cut(s)	113, 558, 580, 646
RsaNI	GTAC	4 cut(s)	112, 557, 579, 645
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	9 cut(s)	117, 188, 234, 263, 444, 488, 638, 869, 876
SatI	GCNGC	3 cut(s)	180, 183, 882
Sau3AI	GATC	2 cut(s)	193, 278
Sau96I	GGNCC	5 cut(s)	31, 160, 521, 539, 767
SchI	GAGTC	1 cut(s)	645
ScrFI	CCNGG	2 cut(s)	28, 198
SduI	GDGCHC	2 cut(s)	471, 575
SfaNI	GCATC	6 cut(s)	302, 311, 370, 380, 718, 727
SfcI	CTRYAG	2 cut(s)	47, 603
SinI	GGWCC	3 cut(s)	31, 539, 767
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	4 cut(s)	256, 322, 394, 489
SspMI	CTAG	3 cut(s)	143, 251, 375
StyD4I	CCNGG	2 cut(s)	26, 196
TaaI	ACNGT	4 cut(s)	122, 130, 473, 556
TaiI	ACGT	2 cut(s)	366, 701
TasI	AATT	4 cut(s)	256, 322, 394, 489
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	9 cut(s)	117, 188, 234, 263, 444, 488, 638, 869, 876
Tru9I	TTAA	9 cut(s)	117, 188, 234, 263, 444, 488, 638, 869, 876
TscAI	CASTG	3 cut(s)	391, 476, 667
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	3 cut(s)	179, 182, 881
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	5 cut(s)	99, 107, 168, 665, 681
TspRI	CASTG	3 cut(s)	391, 476, 667
Van91I	CCANNNNNTGG	1 cut(s)	530
VneI	GTGCAC	1 cut(s)	467
VpaK11BI	GGWCC	3 cut(s)	31, 539, 767
VspI	ATTAAT	1 cut(s)	488
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	3 cut(s)	275, 334, 735
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	3 cut(s)	143, 251, 375
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.