Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

41201453 .. 41204565

Gene Structure 3113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45648

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCAAGGATGGGAATTCATGGTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTATACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGATGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACCAAAGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTGTTAAGGGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGGCTGTGGTAAATTGTTACATGTATTGCAAGTCTATTCAAGTTGCTCAAAACGTGAAGCTTCCCAGAGATGCCACTGGATGCAATTGCAAAGGAAGTTGTGTAGATTCCAAGACCTGCCAATGTGCCAAACTTAACGGCTCTGACTTCCCATATGTGCACCGTGATGGTGGCAGATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGGTTGTGGACCTTCTATGTCAACCGTACTTCTCAGACGGAGCTCAAGTACCGATTTGAGGTTGTGTTTCACTACAGCTATTTTGGATGTCTTGCAAATACTAATGTTAAGAGGTACTGGACTCTTCTTCACTGCATTTGCGCTTCATTTCAAGTGTGATTCATGGACGTTGAAAATGAAGGAAGACAGACCAGATGATGTCTGTGATGCCTACCATACATATTTTGGTGTAGTAGGTATAATAGTAGATGCCCAATTGGAGCCTCTGCTTTTACATAAGATGCATATAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

257

Amino Acids

28.52

Weight (kDa)

8.34

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-SET	PF05033	91 - 163	6.1e-11	Pre-SET motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	479
AclWI	GGATC	2 cut(s)	137, 150
AcsI	RAATTY	1 cut(s)	15
AfaI	GTAC	3 cut(s)	507, 529, 595
AfiI	CCNNNNNNNGG	2 cut(s)	479, 537
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	6 cut(s)	173, 299, 443, 464, 631, 652
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	4 cut(s)	199, 319, 522, 557
AluI	AGCT	4 cut(s)	199, 319, 522, 557
Alw21I	GWGCWC	2 cut(s)	420, 524
Alw26I	GTCTC	1 cut(s)	155
Alw44I	GTGCAC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	137, 150
AoxI	GGCC	2 cut(s)	108, 470
ApaLI	GTGCAC	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	128, 131
ApoI	RAATTY	1 cut(s)	15
AseI	ATTAAT	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	3 cut(s)	109, 470, 488
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	420
BamHI	GGATCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	2 cut(s)	420, 524
BbvI	GCAGC	2 cut(s)	115, 118
BccI	CCATC	2 cut(s)	4, 419
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	92, 200
BfmI	CTRYAG	1 cut(s)	552
BfuAI	ACCTGC	1 cut(s)	383
BglII	AGATCT	1 cut(s)	227
BisI	GCNGC	2 cut(s)	129, 132
BlsI	GCNGC	2 cut(s)	130, 133
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	3 cut(s)	109, 470, 488
BmiI	GGNNCC	2 cut(s)	144, 741
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	8 cut(s)	115, 251, 260, 319, 329, 676, 718, 750
BpiI	GAAGAC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	508
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 537
Bse1I	ACTGG	3 cut(s)	121, 340, 601
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	5 cut(s)	15, 45, 344, 457, 571
BseLI	CCNNNNNNNGG	2 cut(s)	479, 537
BseMII	CTCAG	1 cut(s)	526
BseNI	ACTGG	3 cut(s)	121, 340, 601
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	2 cut(s)	115, 118
BshFI	GGCC	2 cut(s)	110, 472
BsiHKAI	GWGCWC	2 cut(s)	420, 524
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	479, 537
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	110, 472
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	420, 524
Bsp143I	GATC	2 cut(s)	142, 227
BspANI	GGCC	2 cut(s)	110, 472
BspCNI	CTCAG	1 cut(s)	525
BspLI	GGNNCC	2 cut(s)	144, 741
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	137, 150
BspTNI	GGTCTC	1 cut(s)	155
BsrI	ACTGG	3 cut(s)	121, 340, 601
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	2 cut(s)	142, 227
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	4 cut(s)	71, 79, 422, 505
Bst6I	CTCTTC	1 cut(s)	608
BstDEI	CTNAG	1 cut(s)	512
BstF5I	GGATG	5 cut(s)	15, 45, 344, 457, 571
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	2 cut(s)	145, 230
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	142, 227
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	2 cut(s)	224, 283
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	552
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	2 cut(s)	115, 118
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	2 cut(s)	142, 227
BstYI	RGATCY	2 cut(s)	142, 227
BsuRI	GGCC	2 cut(s)	110, 472
BtsCI	GGATG	5 cut(s)	15, 45, 344, 457, 571
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	2 cut(s)	333, 609
BveI	ACCTGC	1 cut(s)	383
CfoI	GCGC	1 cut(s)	622
Cfr13I	GGNCC	3 cut(s)	109, 470, 488
Csp6I	GTAC	3 cut(s)	506, 528, 594
CviAII	CATG	5 cut(s)	20, 221, 280, 642, 771
CviQI	GTAC	3 cut(s)	506, 528, 594
DdeI	CTNAG	1 cut(s)	512
DpnI	GATC	2 cut(s)	144, 229
DpnII	GATC	2 cut(s)	142, 227
DraI	TTTAAA	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Ecl136II	GAGCTC	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	524
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	488
Eco53kI	GAGCTC	1 cut(s)	522
EcoICRI	GAGCTC	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	447
EcoT22I	ATGCAT	1 cut(s)	765
EcoT38I	GRGCYC	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	5 cut(s)	23, 224, 283, 645, 774
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	5 cut(s)	19, 220, 279, 641, 770
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	129, 132
FokI	GGATG	5 cut(s)	22, 52, 351, 464, 578
FriOI	GRGCYC	1 cut(s)	524
Fsp4HI	GCNGC	2 cut(s)	129, 132
FspBI	CTAG	2 cut(s)	92, 200
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	2 cut(s)	129, 132
HaeIII	GGCC	2 cut(s)	110, 472
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	5 cut(s)	23, 224, 283, 645, 774
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HincII	GTYRAC	2 cut(s)	184, 501
HindII	GTYRAC	2 cut(s)	184, 501
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	3 cut(s)	365, 600, 638
HpaI	GTTAAC	1 cut(s)	184
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	5 cut(s)	82, 184, 418, 488, 501
Hpy188I	TCNGA	2 cut(s)	403, 515
Hpy188III	TCNNGA	3 cut(s)	53, 92, 191
Hpy8I	GTNNAC	5 cut(s)	82, 184, 418, 488, 501
HpyAV	CCTTC	3 cut(s)	197, 501, 652
HpyCH4III	ACNGT	4 cut(s)	71, 79, 422, 505
HpyCH4IV	ACGT	2 cut(s)	312, 647
HpyCH4V	TGCA	8 cut(s)	242, 288, 342, 348, 418, 574, 614, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	512
HpySE526I	ACGT	2 cut(s)	312, 647
Hsp92II	CATG	5 cut(s)	23, 224, 283, 645, 774
HspAI	GCGC	1 cut(s)	620
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	142, 227
LmnI	GCTCC	2 cut(s)	519, 739
Lsp1109I	GCAGC	2 cut(s)	115, 118
LweI	GCATC	8 cut(s)	115, 251, 260, 319, 329, 676, 718, 750
MaeI	CTAG	2 cut(s)	92, 200
MaeII	ACGT	2 cut(s)	312, 647
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	2 cut(s)	144, 229
MboI	GATC	2 cut(s)	142, 227
MboII	GAAGA	3 cut(s)	595, 598, 674
MfeI	CAATTG	2 cut(s)	343, 734
MflI	RGATCY	2 cut(s)	142, 227
MhlI	GDGCHC	2 cut(s)	420, 524
MluCI	AATT	6 cut(s)	15, 205, 271, 343, 438, 734
MlyI	GAGTC	1 cut(s)	594
MnlI	CCTC	4 cut(s)	160, 531, 584, 753
Mph1103I	ATGCAT	1 cut(s)	765
MseI	TTAA	7 cut(s)	66, 137, 183, 212, 393, 437, 587
MslI	CAYNNNNRTG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	147
MunI	CAATTG	2 cut(s)	343, 734
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	2 cut(s)	142, 227
NlaIII	CATG	5 cut(s)	23, 224, 283, 645, 774
NlaIV	GGNNCC	2 cut(s)	144, 741
NsiI	ATGCAT	1 cut(s)	765
NspI	RCATGY	2 cut(s)	224, 283
PciI	ACATGT	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	365, 638
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	130, 133
PleI	GAGTC	1 cut(s)	594
PpsI	GAGTC	1 cut(s)	594
PscI	ACATGT	1 cut(s)	279
PshBI	ATTAAT	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	144, 741
PspPI	GGNCC	3 cut(s)	109, 470, 488
PsuI	RGATCY	2 cut(s)	142, 227
RsaI	GTAC	3 cut(s)	507, 529, 595
RsaNI	GTAC	3 cut(s)	506, 528, 594
RseI	CAYNNNNRTG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	524
SaqAI	TTAA	7 cut(s)	66, 137, 183, 212, 393, 437, 587
SatI	GCNGC	2 cut(s)	129, 132
Sau3AI	GATC	2 cut(s)	142, 227
Sau96I	GGNCC	3 cut(s)	109, 470, 488
SchI	GAGTC	1 cut(s)	594
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	420, 524
SfaNI	GCATC	8 cut(s)	115, 251, 260, 319, 329, 676, 718, 750
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	6 cut(s)	15, 205, 271, 343, 438, 734
SspMI	CTAG	2 cut(s)	92, 200
SstI	GAGCTC	1 cut(s)	524
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	4 cut(s)	71, 79, 422, 505
TaiI	ACGT	2 cut(s)	315, 650
TasI	AATT	6 cut(s)	15, 205, 271, 343, 438, 734
TfiI	GAWTC	2 cut(s)	365, 638
Tru1I	TTAA	7 cut(s)	66, 137, 183, 212, 393, 437, 587
Tru9I	TTAA	7 cut(s)	66, 137, 183, 212, 393, 437, 587
TscAI	CASTG	2 cut(s)	340, 616
TseI	GCWGC	2 cut(s)	128, 131
TspDTI	ATGAA	7 cut(s)	8, 48, 56, 117, 614, 630, 671
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	2 cut(s)	340, 616
Van91I	CCANNNNNTGG	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	488
VspI	ATTAAT	1 cut(s)	437
XapI	RAATTY	1 cut(s)	15
XbaI	TCTAGA	1 cut(s)	91
XceI	RCATGY	2 cut(s)	224, 283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	701
XspI	CTAG	2 cut(s)	92, 200
Zsp2I	ATGCAT	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.