Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

3768111 .. 3772523

Gene Structure 4413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGATCTCGGCGCAGTACCTCGGGACTCAAAAGCTGCTGCCATTGTTAGCGTTGGACTGGGACATAATCGGGGGTTTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTCCTACGGGTTACACGTATTGCAAGTCTATTCAAGTTGCGCAAAACGTGAAGCTTCCCGAGAGATGCCACCGTATGCAATTGCAAAGGAAGTTGTGTAGATTCCAAGACCTACCAATGTGTCAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

85

Amino Acids

9.56

Weight (kDa)

6.52

Isoelectric Point (pI)

26.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	168
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	161
AluBI	AGCT	3 cut(s)	34, 98, 181
AluI	AGCT	3 cut(s)	34, 98, 181
AlwI	GGATC	1 cut(s)	110
Ama87I	CYCGRG	2 cut(s)	20, 185
ApeKI	GCWGC	2 cut(s)	34, 37
AspLEI	GCGC	2 cut(s)	13, 169
AsuNHI	GCTAGC	1 cut(s)	98
AvaI	CYCGRG	2 cut(s)	20, 185
BbvI	GCAGC	2 cut(s)	21, 24
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BfaI	CTAG	1 cut(s)	99
BisI	GCNGC	2 cut(s)	35, 38
BlsI	GCNGC	2 cut(s)	36, 39
BmeT110I	CYCGRG	2 cut(s)	20, 185
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	182
BmtI	GCTAGC	1 cut(s)	102
BmuI	ACTGGG	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	21, 24
BsiHKCI	CYCGRG	2 cut(s)	20, 185
BslFI	GGGAC	2 cut(s)	37, 74
BsmFI	GGGAC	2 cut(s)	37, 74
BsoBI	CYCGRG	2 cut(s)	20, 185
Bsp143I	GATC	2 cut(s)	3, 115
BspACI	CCGC	1 cut(s)	119
BspOI	GCTAGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	3, 115
Bst4CI	ACNGT	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	13, 169
BstKTI	GATC	2 cut(s)	6, 118
BstMBI	GATC	2 cut(s)	3, 115
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	21, 24
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	2 cut(s)	13, 169
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	3 cut(s)	34, 98, 181
CviKI_1	RGCY	3 cut(s)	34, 98, 181
CviQI	GTAC	1 cut(s)	16
DpnI	GATC	2 cut(s)	5, 117
DpnII	GATC	2 cut(s)	3, 115
EciI	GGCGGA	1 cut(s)	108
Eco88I	CYCGRG	2 cut(s)	20, 185
FaiI	YATR	2 cut(s)	65, 203
FaqI	GGGAC	2 cut(s)	37, 74
Fnu4HI	GCNGC	2 cut(s)	35, 38
Fsp4HI	GCNGC	2 cut(s)	35, 38
FspBI	CTAG	1 cut(s)	99
FspI	TGCGCA	1 cut(s)	168
GlaI	GCGC	2 cut(s)	12, 168
GluI	GCNGC	2 cut(s)	35, 38
HhaI	GCGC	2 cut(s)	13, 169
Hin6I	GCGC	2 cut(s)	11, 167
HinP1I	GCGC	2 cut(s)	11, 167
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	2 cut(s)	25, 228
Hpy188III	TCNNGA	2 cut(s)	22, 185
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	2 cut(s)	143, 174
HpyCH4V	TGCA	3 cut(s)	150, 205, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpySE526I	ACGT	2 cut(s)	143, 174
HspAI	GCGC	2 cut(s)	11, 167
Kzo9I	GATC	2 cut(s)	3, 115
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	3 cut(s)	43, 108, 135
Lsp1109I	GCAGC	2 cut(s)	21, 24
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	2 cut(s)	143, 174
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	2 cut(s)	5, 117
MboI	GATC	2 cut(s)	3, 115
MfeI	CAATTG	1 cut(s)	206
MluCI	AATT	2 cut(s)	103, 206
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	29, 73
MseI	TTAA	1 cut(s)	256
MunI	CAATTG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	2 cut(s)	3, 115
NheI	GCTAGC	1 cut(s)	98
NsbI	TGCGCA	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	36, 39
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Ppu21I	YACGTR	1 cut(s)	144
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	256
SatI	GCNGC	2 cut(s)	35, 38
Sau3AI	GATC	2 cut(s)	3, 115
SchI	GAGTC	1 cut(s)	19
SetI	ASST	7 cut(s)	21, 36, 100, 146, 177, 183, 240
SfaNI	GCATC	1 cut(s)	182
Sse9I	AATT	2 cut(s)	103, 206
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	2 cut(s)	146, 177
TaqI	TCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	103, 206
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	256
Tru9I	TTAA	1 cut(s)	256
TseI	GCWGC	2 cut(s)	34, 37
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.