Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

63758644 .. 63762928

Gene Structure 4285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG326100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAGCACTCCAGCAGTGGAAAACGACGCCCTGGAGAAAGCCGGTAGTGCCACCGAAGCTCTTTACTTAACTCGAGATACCTACTTTCCGGCGAACCCCGACGACAAAATCGCCAGACTAAAATCAGATTCCGATCTCGCTCTCAACCTCCTCGATTCCATTCCTCCCGAGCAAAGGAAGCTTCTAACGCAGCGTGCAAGGTACGAATATCTGAGAGGAAAGATATTGGATGTATTGCCGGAGTATAAAAGAGAGGCTGAGGATCATCTCTCGAAAGCGGTTAAGCTGAATCCATCTCTTGCGGATGCGTGGCTGTGCTTAGGTAACTGCATTTGGAAGAAGGGAGATCTGTCTTCGGCCAAGAACTGCTTTACTCTTGCACTAAGCAAAGGTCCAAACAAACAGATACTATGTCAACTCTCAATGCTCGAAAGGAAAATGGCCCAAGGTGCTGATAATCAGGCAGAACTTGTTGATGAAAGCATAAAACATGCCAAGGAAGCTATAACTTTGGATGTCAAGGATGGGAATTCATGGTACAATCTTGGAAATGCATGTCTTACAAGTTTTTTTGTGACCGGAGCCTGGGACCACGCCAAACTTCTGCAGTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACTGAAGAGGTTCAAAAGATTGTAAACCTCCTTGACAAGCTAGATAATTTGTTAAGGGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGGCTGTGGTAAATTTGAATTCGTCATATAAAAGAGCTACTGTAAATCTTTTATCAGAGGGTCTGAACAAAGCAGTAGCATTAGTGGGGAAAGTGCTATTCTTCATTAAGCATGAAAATGTTGCTCCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

333

Amino Acids

36.92

Weight (kDa)

7.57

Isoelectric Point (pI)

28.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	278, 302
AclWI	GGATC	3 cut(s)	270, 746, 759
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	3 cut(s)	529, 880, 886
AcuI	CTGAAG	1 cut(s)	792
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	3 cut(s)	203, 539, 671
AfiI	CCNNNNNNNGG	2 cut(s)	174, 585
AgsI	TTSAA	3 cut(s)	734, 782, 886
AjnI	CCWGG	3 cut(s)	30, 584, 754
AluBI	AGCT	7 cut(s)	59, 181, 286, 503, 737, 808, 905
AluI	AGCT	7 cut(s)	59, 181, 286, 503, 737, 808, 905
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	615, 764
AlwI	GGATC	3 cut(s)	270, 746, 759
Ama87I	CYCGRG	2 cut(s)	72, 167
AoxI	GGCC	3 cut(s)	357, 441, 717
ApeKI	GCWGC	3 cut(s)	190, 737, 740
ApoI	RAATTY	3 cut(s)	529, 880, 886
Asp700I	GAANNNNTTC	1 cut(s)	777
AspS9I	GGNCC	4 cut(s)	392, 442, 589, 718
AvaI	CYCGRG	2 cut(s)	72, 167
AvaII	GGWCC	2 cut(s)	392, 589
BamHI	GGATCC	1 cut(s)	751
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	202, 724, 727
BccI	CCATC	2 cut(s)	301, 518
BciT130I	CCWGG	3 cut(s)	32, 586, 756
BcoDI	GTCTC	2 cut(s)	615, 764
BfaI	CTAG	2 cut(s)	701, 809
BfmI	CTRYAG	1 cut(s)	605
BglII	AGATCT	2 cut(s)	346, 836
BisI	GCNGC	3 cut(s)	191, 738, 741
BlsI	GCNGC	3 cut(s)	192, 739, 742
Bme1390I	CCNGG	3 cut(s)	32, 586, 756
Bme18I	GGWCC	2 cut(s)	392, 589
BmeT110I	CYCGRG	2 cut(s)	72, 167
BmgT120I	GGNCC	4 cut(s)	392, 442, 589, 718
BmiI	GGNNCC	3 cut(s)	583, 590, 753
BmrFI	CCNGG	3 cut(s)	32, 586, 756
BmsI	GCATC	3 cut(s)	295, 860, 869
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	2 cut(s)	258, 319
BsaBI	GATNNNNATC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	4 cut(s)	30, 445, 495, 585
BsaWI	WCCGGW	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 585
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	730
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	3 cut(s)	32, 586, 756
BseDI	CCNNGG	4 cut(s)	30, 445, 495, 585
BseGI	GGATG	5 cut(s)	235, 310, 520, 529, 654
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	174, 585
BseMII	CTCAG	2 cut(s)	203, 249
BseNI	ACTGG	1 cut(s)	730
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	202, 724, 727
BshFI	GGCC	3 cut(s)	359, 443, 719
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	72, 167
BsiSI	CCGG	4 cut(s)	42, 89, 239, 579
BslFI	GGGAC	2 cut(s)	602, 840
BslI	CCNNNNNNNGG	2 cut(s)	174, 585
BsmAI	GTCTC	2 cut(s)	615, 764
BsmFI	GGGAC	2 cut(s)	602, 840
BsnI	GGCC	3 cut(s)	359, 443, 719
Bso31I	GGTCTC	1 cut(s)	764
BsoBI	CYCGRG	2 cut(s)	72, 167
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	133, 262, 346, 751, 836
BspACI	CCGC	2 cut(s)	278, 302
BspANI	GGCC	3 cut(s)	359, 443, 719
BspCNI	CTCAG	2 cut(s)	204, 250
BspLI	GGNNCC	3 cut(s)	583, 590, 753
BspMAI	CTGCAG	1 cut(s)	609
BspPI	GGATC	3 cut(s)	270, 746, 759
BspTNI	GGTCTC	1 cut(s)	764
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	730
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	30, 445, 495, 585
BssMI	GATC	5 cut(s)	133, 262, 346, 751, 836
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	2 cut(s)	445, 495
Bst2UI	CCWGG	3 cut(s)	32, 586, 756
Bst4CI	ACNGT	4 cut(s)	680, 688, 910, 999
Bst6I	CTCTTC	1 cut(s)	768
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	4 cut(s)	212, 258, 319, 383
BstF5I	GGATG	5 cut(s)	235, 310, 520, 529, 654
BstKTI	GATC	5 cut(s)	136, 265, 349, 754, 839
BstMAI	GTCTC	2 cut(s)	615, 764
BstMBI	GATC	5 cut(s)	133, 262, 346, 751, 836
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 56, 178, 187, 449, 500, 857
BstNI	CCWGG	3 cut(s)	32, 586, 756
BstNSI	RCATGY	3 cut(s)	494, 558, 833
BstSCI	CCNGG	3 cut(s)	30, 584, 754
BstSFI	CTRYAG	1 cut(s)	605
BstV1I	GCAGC	3 cut(s)	202, 724, 727
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	3 cut(s)	346, 751, 836
BstYI	RGATCY	3 cut(s)	346, 751, 836
BsuRI	GGCC	3 cut(s)	359, 443, 719
BtsCI	GGATG	5 cut(s)	235, 310, 520, 529, 654
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 995
Cac8I	GCNNGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	4 cut(s)	392, 442, 589, 718
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	3 cut(s)	202, 538, 670
CviAII	CATG	5 cut(s)	491, 534, 555, 830, 980
CviQI	GTAC	3 cut(s)	202, 538, 670
DdeI	CTNAG	4 cut(s)	212, 258, 319, 383
DpnI	GATC	5 cut(s)	135, 264, 348, 753, 838
DpnII	GATC	5 cut(s)	133, 262, 346, 751, 836
DraI	TTTAAA	1 cut(s)	747
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
Eco130I	CCWWGG	2 cut(s)	445, 495
Eco31I	GGTCTC	1 cut(s)	764
Eco47I	GGWCC	2 cut(s)	392, 589
Eco57I	CTGAAG	1 cut(s)	792
Eco88I	CYCGRG	2 cut(s)	72, 167
EcoRI	GAATTC	2 cut(s)	529, 886
EcoRII	CCWGG	3 cut(s)	30, 584, 754
EcoT14I	CCWWGG	2 cut(s)	445, 495
EcoT22I	ATGCAT	1 cut(s)	556
ErhI	CCWWGG	2 cut(s)	445, 495
FaeI	CATG	5 cut(s)	494, 537, 558, 833, 983
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	2 cut(s)	602, 840
FatI	CATG	5 cut(s)	490, 533, 554, 829, 979
Fnu4HI	GCNGC	3 cut(s)	191, 738, 741
FokI	GGATG	5 cut(s)	242, 317, 527, 536, 661
Fsp4HI	GCNGC	3 cut(s)	191, 738, 741
FspBI	CTAG	2 cut(s)	701, 809
GluI	GCNGC	3 cut(s)	191, 738, 741
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	359, 443, 719
HapII	CCGG	4 cut(s)	42, 89, 239, 579
HgaI	GACGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	494, 537, 558, 833, 983
HincII	GTYRAC	1 cut(s)	416
HindII	GTYRAC	1 cut(s)	416
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	3 cut(s)	128, 155, 289
HpaII	CCGG	4 cut(s)	42, 89, 239, 579
Hpy166II	GTNNAC	3 cut(s)	416, 691, 793
Hpy188I	TCNGA	5 cut(s)	127, 133, 213, 925, 933
Hpy188III	TCNNGA	5 cut(s)	74, 167, 271, 662, 701
Hpy8I	GTNNAC	3 cut(s)	416, 691, 793
Hpy99I	CGWCG	2 cut(s)	29, 104
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	4 cut(s)	680, 688, 910, 999
HpyCH4V	TGCA	6 cut(s)	197, 330, 380, 554, 607, 851
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 56, 178, 187, 449, 500, 857
HpyF3I	CTNAG	4 cut(s)	212, 258, 319, 383
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	494, 537, 558, 833, 983
Kzo9I	GATC	5 cut(s)	133, 262, 346, 751, 836
LmnI	GCTCC	2 cut(s)	581, 997
Lsp1109I	GCAGC	3 cut(s)	202, 724, 727
LweI	GCATC	3 cut(s)	295, 860, 869
MaeI	CTAG	2 cut(s)	701, 809
MaeIII	GTNAC	2 cut(s)	323, 574
MalI	GATC	5 cut(s)	135, 264, 348, 753, 838
MboI	GATC	5 cut(s)	133, 262, 346, 751, 836
MboII	GAAGA	4 cut(s)	345, 349, 785, 961
MflI	RGATCY	3 cut(s)	346, 751, 836
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	529, 814, 880, 886
MnlI	CCTC	9 cut(s)	158, 161, 174, 209, 247, 253, 769, 806, 919
Mph1103I	ATGCAT	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	777
MseI	TTAA	6 cut(s)	68, 282, 675, 746, 821, 975
MslI	CAYNNNNRTG	1 cut(s)	984
MspI	CCGG	4 cut(s)	42, 89, 239, 579
MspR9I	CCNGG	3 cut(s)	32, 586, 756
MvaI	CCWGG	3 cut(s)	32, 586, 756
MwoI	GCNNNNNNNGC	7 cut(s)	47, 56, 178, 187, 449, 500, 857
NdeII	GATC	5 cut(s)	133, 262, 346, 751, 836
NlaIII	CATG	5 cut(s)	494, 537, 558, 833, 983
NlaIV	GGNNCC	3 cut(s)	583, 590, 753
NmuCI	GTSAC	1 cut(s)	574
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	3 cut(s)	494, 558, 833
PaeR7I	CTCGAG	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	3 cut(s)	128, 155, 289
PkrI	GCNGC	3 cut(s)	192, 739, 742
Psp6I	CCWGG	3 cut(s)	30, 584, 754
PspGI	CCWGG	3 cut(s)	30, 584, 754
PspN4I	GGNNCC	3 cut(s)	583, 590, 753
PspPI	GGNCC	4 cut(s)	392, 442, 589, 718
PstI	CTGCAG	1 cut(s)	609
PsuI	RGATCY	3 cut(s)	346, 751, 836
RsaI	GTAC	3 cut(s)	203, 539, 671
RsaNI	GTAC	3 cut(s)	202, 538, 670
RseI	CAYNNNNRTG	1 cut(s)	984
SaqAI	TTAA	6 cut(s)	68, 282, 675, 746, 821, 975
SatI	GCNGC	3 cut(s)	191, 738, 741
Sau3AI	GATC	5 cut(s)	133, 262, 346, 751, 836
Sau96I	GGNCC	4 cut(s)	392, 442, 589, 718
ScrFI	CCNGG	3 cut(s)	32, 586, 756
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	295, 860, 869
SfcI	CTRYAG	1 cut(s)	605
Sfr274I	CTCGAG	1 cut(s)	72
SinI	GGWCC	2 cut(s)	392, 589
SlaI	CTCGAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	984
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	4 cut(s)	529, 814, 880, 886
SsiI	CCGC	2 cut(s)	278, 302
SspMI	CTAG	2 cut(s)	701, 809
StyD4I	CCNGG	3 cut(s)	30, 584, 754
StyI	CCWWGG	2 cut(s)	445, 495
TaaI	ACNGT	4 cut(s)	680, 688, 910, 999
TaqI	TCGA	4 cut(s)	73, 153, 272, 429
TasI	AATT	4 cut(s)	529, 814, 880, 886
TatI	WGTACW	1 cut(s)	669
TfiI	GAWTC	3 cut(s)	128, 155, 289
Tru1I	TTAA	6 cut(s)	68, 282, 675, 746, 821, 975
Tru9I	TTAA	6 cut(s)	68, 282, 675, 746, 821, 975
TscAI	CASTG	2 cut(s)	21, 1002
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	3 cut(s)	190, 737, 740
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	7 cut(s)	492, 522, 657, 665, 726, 961, 996
TspRI	CASTG	2 cut(s)	21, 1002
VpaK11BI	GGWCC	2 cut(s)	392, 589
XapI	RAATTY	3 cut(s)	529, 880, 886
XbaI	TCTAGA	1 cut(s)	700
XceI	RCATGY	3 cut(s)	494, 558, 833
XhoI	CTCGAG	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	2 cut(s)	701, 809
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.