Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033149.1

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1327

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033149.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 275 bp

gttacacgtattgcaagtctattcaaattgcgcaaaacgtgaagcttcccagagatgccactggatgcaattgcaaaggaagttgtgtagattccaagacctgccaatgtgtcaaacttaacggctctgactttccatatgtgcaccgtgatggtggcaggttggtgtgcgaggacataactgggggtctagaggatattgccattccagctagcaatttggtcgatgatccgcctgttgctcctacaggcaagttgatcatgttcatggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

90

Amino Acids

9.7

Weight (kDa)

5.24

Isoelectric Point (pI)

15.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
Acc36I	ACCTGC	2 cut(s)	109, 149
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	2 cut(s)	45, 211
AluI	AGCT	2 cut(s)	45, 211
Alw21I	GWGCWC	1 cut(s)	146
Alw44I	GTGCAC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	223
ApaLI	GTGCAC	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	33
AsuNHI	GCTAGC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	146
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	138
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BclI	TGATCA	1 cut(s)	257
BfaI	CTAG	2 cut(s)	190, 212
BfmI	CTRYAG	1 cut(s)	245
BfuAI	ACCTGC	2 cut(s)	109, 149
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	2 cut(s)	45, 55
BmtI	GCTAGC	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	66, 186
BseGI	GGATG	1 cut(s)	70
BseNI	ACTGG	2 cut(s)	66, 186
BseSI	GKGCMC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	228, 257
BspACI	CCGC	1 cut(s)	232
BspMI	ACCTGC	2 cut(s)	109, 149
BspOI	GCTAGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	66, 186
BssMI	GATC	2 cut(s)	228, 257
Bst4CI	ACNGT	1 cut(s)	148
BstBAI	YACGTR	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	2 cut(s)	231, 260
BstMBI	GATC	2 cut(s)	228, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	245
BstSLI	GKGCMC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	59
BveI	ACCTGC	2 cut(s)	109, 149
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	33
CviAII	CATG	2 cut(s)	261, 267
CviJI	RGCY	3 cut(s)	45, 125, 211
CviKI_1	RGCY	3 cut(s)	45, 125, 211
DpnI	GATC	2 cut(s)	230, 259
DpnII	GATC	2 cut(s)	228, 257
EciI	GGCGGA	1 cut(s)	221
FaeI	CATG	2 cut(s)	264, 270
FaiI	YATR	5 cut(s)	138, 140, 178, 262, 268
FatI	CATG	2 cut(s)	260, 266
FauNDI	CATATG	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	257
FokI	GGATG	1 cut(s)	77
FspBI	CTAG	2 cut(s)	190, 212
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	264, 270
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	2 cut(s)	7, 38
HpyCH4V	TGCA	4 cut(s)	14, 68, 74, 144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpySE526I	ACGT	2 cut(s)	7, 38
Hsp92II	CATG	2 cut(s)	264, 270
HspAI	GCGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	228, 257
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	8 cut(s)	47, 63, 114, 144, 167, 221, 233, 248
LweI	GCATC	2 cut(s)	45, 55
MaeI	CTAG	2 cut(s)	190, 212
MaeII	ACGT	2 cut(s)	7, 38
MalI	GATC	2 cut(s)	230, 259
MboI	GATC	2 cut(s)	228, 257
MfeI	CAATTG	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	3 cut(s)	26, 69, 216
MnlI	CCTC	2 cut(s)	165, 186
MseI	TTAA	1 cut(s)	119
MslI	CAYNNNNRTG	2 cut(s)	149, 265
MunI	CAATTG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	208
NdeI	CATATG	1 cut(s)	138
NdeII	GATC	2 cut(s)	228, 257
NheI	GCTAGC	1 cut(s)	211
NlaIII	CATG	2 cut(s)	264, 270
NsbI	TGCGCA	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	8
RseI	CAYNNNNRTG	2 cut(s)	149, 265
SaqAI	TTAA	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	228, 257
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	6 cut(s)	10, 41, 47, 103, 163, 213
SfaNI	GCATC	2 cut(s)	45, 55
SfcI	CTRYAG	1 cut(s)	245
SmiMI	CAYNNNNRTG	2 cut(s)	149, 265
Sse9I	AATT	3 cut(s)	26, 69, 216
SsiI	CCGC	1 cut(s)	232
SspMI	CTAG	2 cut(s)	190, 212
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	2 cut(s)	10, 41
TaqI	TCGA	1 cut(s)	224
TasI	AATT	3 cut(s)	26, 69, 216
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	1 cut(s)	66
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	142
XbaI	TCTAGA	1 cut(s)	189
XspI	CTAG	2 cut(s)	190, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.