Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

63578063 .. 63587529

Gene Structure 9467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGTTTTGGTAAGACTCATGGCAACAACGAAGGGTTAGGTTATGAAGGTGAGTCTTGCAAGCCTTTAACCTTTGTTAAAGGTGTGGAATATGAAAGTTCATTGGATCAGTCACAATCTTCAAGTAACAATGATTCTGGTCCCAAGTTGCCCAAAAGATCAGAGGCAGATTTAGCCCTTCAAACCCATCAAAAAGATACTCAGGACACATACATCCTAAGTGTAATATACTTCGCAAAGTCACTCAAAATCAGAGAAAAACATCAAAAATTAGCCCAACTGCATCGCTGCAAAATTTCATATCGAAGACCAGCTAGAACACGAGCTTGGTTTTGCACTCTTGCCAAGTCAAATTGGAGGAGTTCAACAACTGCTTCTCCGAGGCAAGTGGTCGAACACCTTATATGCACTTTTTTGGAGCTACTTTGCAGCGATCAGGGGATGGTAAGTTTCGATAATCAGGCAGAACTTGTTGATGAAAGCATAAAACATGCTAAGGAAGCTATAACTTTGGATGTCAAGGATGGGAATTCATGGTTTTTTTTTGTGACCGGAGCCTGGGACTATGCCAAACTTCTGCAGTCTCTAAAGGCATACCAAAATGCTGTAAGTGCACAAACAGTTCCTAAAGATCAGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCTTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACCGAAGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTGTTAAGGGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGGCTGTGGTAAATTTGAATTCGTCATATAAAAGGGCTACTGTAAATCTTTTATCAGAGGGTCTGAACAAAGCAGTAGCATTAGGTTACATGTATTGCAAGTCTATTCAAGTTGCGCAAAACGTGAAGCTTCCCAGAGATGCCACTGGATGCAATTGCAAAGGAACTACATGTTGTCTGACCCAACCTTCTGACAACAACAAGCATATAAGCCCCTATTGTCTGGCACAACCTTCAGACAACAGTAAGCATATAACCTGCTGTTGTTCTTTTTGTTATTCAGACAACAGTCATGCAAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

386

Amino Acids

42.94

Weight (kDa)

8.66

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	972
Acc36I	ACCTGC	1 cut(s)	1121
AciI	CCGC	1 cut(s)	1156
AclWI	GGATC	3 cut(s)	114, 734, 747
AcsI	RAATTY	4 cut(s)	294, 529, 868, 874
AcuI	CTGAAG	1 cut(s)	1074
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	1 cut(s)	558
AflIII	ACRYGT	2 cut(s)	945, 1025
AgsI	TTSAA	7 cut(s)	123, 182, 366, 722, 770, 874, 965
AjnI	CCWGG	2 cut(s)	557, 742
AjuI	GAANNNNNNNTTGG	2 cut(s)	310, 342
AluBI	AGCT	7 cut(s)	314, 326, 421, 503, 725, 796, 985
AluI	AGCT	7 cut(s)	314, 326, 421, 503, 725, 796, 985
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	2 cut(s)	588, 752
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	3 cut(s)	114, 734, 747
AoxI	GGCC	1 cut(s)	705
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	4 cut(s)	288, 429, 725, 728
ApoI	RAATTY	4 cut(s)	294, 529, 868, 874
Asp700I	GAANNNNTTC	1 cut(s)	765
AspLEI	GCGC	1 cut(s)	973
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	616
BamHI	GGATCC	1 cut(s)	739
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	4 cut(s)	275, 441, 712, 715
BccI	CCATC	3 cut(s)	195, 436, 518
BciT130I	CCWGG	2 cut(s)	559, 744
BcoDI	GTCTC	2 cut(s)	588, 752
BfaI	CTAG	3 cut(s)	315, 689, 797
BfmI	CTRYAG	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	1121
BglII	AGATCT	1 cut(s)	824
BisI	GCNGC	5 cut(s)	289, 430, 726, 729, 1156
BlsI	GCNGC	5 cut(s)	290, 431, 727, 730, 1157
Bme1390I	CCNGG	2 cut(s)	559, 744
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	3 cut(s)	142, 556, 741
BmrFI	CCNGG	2 cut(s)	559, 744
BmsI	GCATC	5 cut(s)	292, 848, 857, 985, 995
BoxI	GACNNNNGTC	1 cut(s)	1143
BpiI	GAAGAC	1 cut(s)	313
Bpu10I	CCTNAGC	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	752
BsaJI	CCNNGG	2 cut(s)	380, 558
BsaWI	WCCGGW	1 cut(s)	551
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse1I	ACTGG	2 cut(s)	718, 1006
BseBI	CCWGG	2 cut(s)	559, 744
BseDI	CCNNGG	2 cut(s)	380, 558
BseGI	GGATG	5 cut(s)	213, 447, 520, 529, 1010
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	2 cut(s)	718, 1006
BseRI	GAGGAG	1 cut(s)	373
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	4 cut(s)	275, 441, 712, 715
BshFI	GGCC	1 cut(s)	707
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	3 cut(s)	126, 575, 828
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmAI	GTCTC	2 cut(s)	588, 752
BsmFI	GGGAC	3 cut(s)	126, 575, 828
BsnI	GGCC	1 cut(s)	707
Bso31I	GGTCTC	1 cut(s)	752
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	6 cut(s)	106, 158, 433, 631, 739, 824
BspACI	CCGC	1 cut(s)	1156
BspANI	GGCC	1 cut(s)	707
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	3 cut(s)	142, 556, 741
BspMAI	CTGCAG	1 cut(s)	582
BspMI	ACCTGC	1 cut(s)	1121
BspPI	GGATC	3 cut(s)	114, 734, 747
BspTNI	GGTCTC	1 cut(s)	752
BsrI	ACTGG	2 cut(s)	718, 1006
BssECI	CCNNGG	2 cut(s)	380, 558
BssMI	GATC	6 cut(s)	106, 158, 433, 631, 739, 824
BssSI	CACGAG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	559, 744
Bst4CI	ACNGT	6 cut(s)	622, 668, 676, 898, 1100, 1145
Bst6I	CTCTTC	1 cut(s)	756
BstC8I	GCNNGC	2 cut(s)	62, 1153
BstDEI	CTNAG	3 cut(s)	201, 218, 495
BstF5I	GGATG	5 cut(s)	213, 447, 520, 529, 1010
BstHHI	GCGC	1 cut(s)	973
BstKTI	GATC	6 cut(s)	109, 161, 436, 634, 742, 827
BstMAI	GTCTC	2 cut(s)	588, 752
BstMBI	GATC	6 cut(s)	106, 158, 433, 631, 739, 824
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 500, 611, 845
BstNI	CCWGG	2 cut(s)	559, 744
BstNSI	RCATGY	4 cut(s)	494, 821, 949, 1029
BstPAI	GACNNNNGTC	1 cut(s)	1143
BstSCI	CCNGG	2 cut(s)	557, 742
BstSFI	CTRYAG	1 cut(s)	578
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	4 cut(s)	275, 441, 712, 715
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	2 cut(s)	739, 824
BstYI	RGATCY	2 cut(s)	739, 824
BsuRI	GGCC	1 cut(s)	707
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	5 cut(s)	213, 447, 520, 529, 1010
BtsIMutI	CAGTG	1 cut(s)	999
BveI	ACCTGC	1 cut(s)	1121
Cac8I	GCNNGC	2 cut(s)	62, 1153
CfoI	GCGC	1 cut(s)	973
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	7 cut(s)	20, 491, 534, 818, 946, 1026, 1148
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	3 cut(s)	201, 218, 495
DpnI	GATC	6 cut(s)	108, 160, 435, 633, 741, 826
DpnII	GATC	6 cut(s)	106, 158, 433, 631, 739, 824
DraI	TTTAAA	1 cut(s)	735
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
Eco31I	GGTCTC	1 cut(s)	752
Eco47I	GGWCC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	1074
EcoRI	GAATTC	2 cut(s)	529, 874
EcoRII	CCWGG	2 cut(s)	557, 742
FaeI	CATG	7 cut(s)	23, 494, 537, 821, 949, 1029, 1151
FaqI	GGGAC	3 cut(s)	126, 575, 828
FatI	CATG	7 cut(s)	19, 490, 533, 817, 945, 1025, 1147
Fnu4HI	GCNGC	5 cut(s)	289, 430, 726, 729, 1156
FokI	GGATG	5 cut(s)	200, 454, 527, 536, 1017
Fsp4HI	GCNGC	5 cut(s)	289, 430, 726, 729, 1156
FspBI	CTAG	3 cut(s)	315, 689, 797
FspI	TGCGCA	1 cut(s)	972
GlaI	GCGC	1 cut(s)	972
GluI	GCNGC	5 cut(s)	289, 430, 726, 729, 1156
HaeIII	GGCC	1 cut(s)	707
HapII	CCGG	1 cut(s)	552
HhaI	GCGC	1 cut(s)	973
Hin1II	CATG	7 cut(s)	23, 494, 537, 821, 949, 1029, 1151
Hin6I	GCGC	1 cut(s)	971
HinP1I	GCGC	1 cut(s)	971
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	983
HinfI	GANTC	3 cut(s)	16, 53, 134
HpaI	GTTAAC	1 cut(s)	781
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	3 cut(s)	614, 679, 781
Hpy188III	TCNNGA	4 cut(s)	203, 650, 689, 788
Hpy8I	GTNNAC	3 cut(s)	614, 679, 781
HpyAV	CCTTC	6 cut(s)	26, 41, 188, 794, 1053, 1098
HpyCH4III	ACNGT	6 cut(s)	622, 668, 676, 898, 1100, 1145
HpyCH4IV	ACGT	1 cut(s)	978
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 500, 611, 845
HpyF3I	CTNAG	3 cut(s)	201, 218, 495
HpySE526I	ACGT	1 cut(s)	978
Hsp92II	CATG	7 cut(s)	23, 494, 537, 821, 949, 1029, 1151
HspAI	GCGC	1 cut(s)	971
KspAI	GTTAAC	1 cut(s)	781
Kzo9I	GATC	6 cut(s)	106, 158, 433, 631, 739, 824
LmnI	GCTCC	2 cut(s)	418, 554
Lsp1109I	GCAGC	4 cut(s)	275, 441, 712, 715
LweI	GCATC	5 cut(s)	292, 848, 857, 985, 995
MaeI	CTAG	3 cut(s)	315, 689, 797
MaeII	ACGT	1 cut(s)	978
MaeIII	GTNAC	5 cut(s)	111, 125, 240, 547, 941
MalI	GATC	6 cut(s)	108, 160, 435, 633, 741, 826
MboI	GATC	6 cut(s)	106, 158, 433, 631, 739, 824
MboII	GAAGA	3 cut(s)	111, 318, 773
MfeI	CAATTG	1 cut(s)	1009
MflI	RGATCY	2 cut(s)	739, 824
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	8 cut(s)	269, 294, 352, 529, 802, 868, 874, 1009
MlyI	GAGTC	2 cut(s)	10, 62
MnlI	CCTC	5 cut(s)	157, 351, 375, 757, 907
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	6 cut(s)	68, 78, 663, 734, 780, 809
MspA1I	CMGCKG	1 cut(s)	1158
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	2 cut(s)	559, 744
MunI	CAATTG	1 cut(s)	1009
MvaI	CCWGG	2 cut(s)	559, 744
MwoI	GCNNNNNNNGC	4 cut(s)	173, 500, 611, 845
NdeII	GATC	6 cut(s)	106, 158, 433, 631, 739, 824
NlaIII	CATG	7 cut(s)	23, 494, 537, 821, 949, 1029, 1151
NlaIV	GGNNCC	3 cut(s)	142, 556, 741
NmuCI	GTSAC	3 cut(s)	111, 240, 547
NsbI	TGCGCA	1 cut(s)	972
NspI	RCATGY	4 cut(s)	494, 821, 949, 1029
PciI	ACATGT	2 cut(s)	945, 1025
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	5 cut(s)	290, 431, 727, 730, 1157
PleI	GAGTC	2 cut(s)	10, 61
PpsI	GAGTC	2 cut(s)	10, 61
PscI	ACATGT	2 cut(s)	945, 1025
PshAI	GACNNNNGTC	1 cut(s)	1143
Psp6I	CCWGG	2 cut(s)	557, 742
PspGI	CCWGG	2 cut(s)	557, 742
PspN4I	GGNNCC	3 cut(s)	142, 556, 741
PspPI	GGNCC	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	582
PsuI	RGATCY	2 cut(s)	739, 824
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
SaqAI	TTAA	6 cut(s)	68, 78, 663, 734, 780, 809
SatI	GCNGC	5 cut(s)	289, 430, 726, 729, 1156
Sau3AI	GATC	6 cut(s)	106, 158, 433, 631, 739, 824
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	2 cut(s)	10, 62
ScrFI	CCNGG	2 cut(s)	559, 744
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	5 cut(s)	292, 848, 857, 985, 995
SfcI	CTRYAG	1 cut(s)	578
SinI	GGWCC	1 cut(s)	140
Sse9I	AATT	8 cut(s)	269, 294, 352, 529, 802, 868, 874, 1009
SsiI	CCGC	1 cut(s)	1156
SspMI	CTAG	3 cut(s)	315, 689, 797
StyD4I	CCNGG	2 cut(s)	557, 742
TaaI	ACNGT	6 cut(s)	622, 668, 676, 898, 1100, 1145
TaiI	ACGT	1 cut(s)	981
TaqI	TCGA	3 cut(s)	304, 393, 453
TasI	AATT	8 cut(s)	269, 294, 352, 529, 802, 868, 874, 1009
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	1 cut(s)	1158
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	6 cut(s)	68, 78, 663, 734, 780, 809
Tru9I	TTAA	6 cut(s)	68, 78, 663, 734, 780, 809
TscAI	CASTG	1 cut(s)	1006
TseFI	GTSAC	3 cut(s)	111, 240, 547
TseI	GCWGC	4 cut(s)	288, 429, 725, 728
Tsp45I	GTSAC	3 cut(s)	111, 240, 547
TspDTI	ATGAA	8 cut(s)	60, 90, 108, 288, 492, 522, 653, 714
TspRI	CASTG	1 cut(s)	1006
VneI	GTGCAC	1 cut(s)	612
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	4 cut(s)	294, 529, 868, 874
XbaI	TCTAGA	1 cut(s)	688
XceI	RCATGY	4 cut(s)	494, 821, 949, 1029
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	3 cut(s)	315, 689, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.