Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

42074302 .. 42085129

Gene Structure 10828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034398

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGGTTGCTGGAATGGTTTTGATGGAAATTGATTACGTTCAATGGCTCTATGAAGCCGAGCTTGGTGTTGAAGGAATTACAAAGCATGAAAGCTTATTTGTGAAAGGATCAATGTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAGGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACCGAAGTGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTGTTAAGGGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCGGGCTGTGGTAAATTTGATCAGGGGAGTAAACCCAGTAGTTCAGCCATGGATAGATTTGAATATGAATGTTCTTGTTTATAATGGTGAGATCTTTGGGGGGATTGAGATTGCTAGTGAGGAGAATGATGGTGAAGTTCTAATGGGGTTGCTGGGAGGGTGTGAAAGTTGTGTGCCGAATGTGGTTTCTAGGATCAAGGGGCCTTGGGCTATCATTTATTGGCAGATTCAATTTGTTAATGGACGTGTACCACAATCTATATCAGAAATACGAGGGTTGGTGTGCGAGGACATAACTAGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTTTGCCAGTTGATGTTGTAAATATGGTTATCTTAGCAAGCATAAAGGAGTTAAGGCTTAAAGCTGTTGGTGCATTGTTTTCACTTATTTGTGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

277

Amino Acids

30.25

Weight (kDa)

4.68

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AciI	CCGC	1 cut(s)	722
AclWI	GGATC	5 cut(s)	118, 254, 267, 575, 713
AcsI	RAATTY	1 cut(s)	388
AfaI	GTAC	2 cut(s)	179, 624
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	6 cut(s)	44, 74, 242, 290, 436, 605
AjiI	CACGTC	1 cut(s)	620
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	6 cut(s)	64, 96, 245, 316, 701, 794
AluI	AGCT	6 cut(s)	64, 96, 245, 316, 701, 794
Alw26I	GTCTC	2 cut(s)	123, 272
AlwI	GGATC	5 cut(s)	118, 254, 267, 575, 713
Ama87I	CYCGRG	1 cut(s)	375
AoxI	GGCC	2 cut(s)	225, 575
ApeKI	GCWGC	2 cut(s)	245, 248
ApoI	RAATTY	1 cut(s)	388
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	226, 575
AsuHPI	GGTGA	2 cut(s)	473, 518
AsuNHI	GCTAGC	1 cut(s)	701
AvaI	CYCGRG	1 cut(s)	375
BamHI	GGATCC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	232, 235
BccI	CCATC	2 cut(s)	19, 497
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	123, 272
BfaI	CTAG	7 cut(s)	209, 317, 489, 564, 672, 680, 702
BglII	AGATCT	2 cut(s)	344, 465
BisI	GCNGC	2 cut(s)	246, 249
BlsI	GCNGC	2 cut(s)	247, 250
Bme1390I	CCNGG	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	375
BmgBI	CACGTC	1 cut(s)	620
BmgT120I	GGNCC	2 cut(s)	226, 575
BmiI	GGNNCC	2 cut(s)	261, 576
BmrFI	CCNGG	1 cut(s)	264
BmrI	ACTGGG	1 cut(s)	404
BmsI	GCATC	2 cut(s)	368, 377
BmtI	GCTAGC	1 cut(s)	705
BmuI	ACTGGG	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	422, 578
Bse1I	ACTGG	3 cut(s)	238, 410, 737
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	422, 578
BseGI	GGATG	1 cut(s)	162
BseNI	ACTGG	3 cut(s)	238, 410, 737
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	2 cut(s)	232, 235
BseYI	CCCAGC	1 cut(s)	526
BshFI	GGCC	2 cut(s)	227, 577
BsiHKCI	CYCGRG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	348
BsmAI	GTCTC	2 cut(s)	123, 272
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	227, 577
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	375
Bsp143I	GATC	7 cut(s)	110, 259, 344, 393, 465, 567, 718
Bsp19I	CCATGG	1 cut(s)	422
BspACI	CCGC	1 cut(s)	722
BspANI	GGCC	2 cut(s)	227, 577
BspLI	GGNNCC	2 cut(s)	261, 576
BspOI	GCTAGC	1 cut(s)	705
BspPI	GGATC	5 cut(s)	118, 254, 267, 575, 713
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	238, 410, 737
BssECI	CCNNGG	2 cut(s)	422, 578
BssMI	GATC	7 cut(s)	110, 259, 344, 393, 465, 567, 718
BssT1I	CCWWGG	2 cut(s)	422, 578
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	188, 196
BstC8I	GCNNGC	2 cut(s)	703, 769
BstDEI	CTNAG	1 cut(s)	763
BstDSI	CCRYGG	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	162
BstKTI	GATC	7 cut(s)	113, 262, 347, 396, 468, 570, 721
BstMAI	GTCTC	2 cut(s)	123, 272
BstMBI	GATC	7 cut(s)	110, 259, 344, 393, 465, 567, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 698, 800
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	232, 235
BstX2I	RGATCY	3 cut(s)	259, 344, 465
BstYI	RGATCY	3 cut(s)	259, 344, 465
BsuRI	GGCC	2 cut(s)	227, 577
BtgI	CCRYGG	1 cut(s)	422
BtrI	CACGTC	1 cut(s)	620
BtsCI	GGATG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	703, 769
Cfr13I	GGNCC	2 cut(s)	226, 575
Csp6I	GTAC	2 cut(s)	178, 623
CviAII	CATG	3 cut(s)	89, 338, 423
CviQI	GTAC	2 cut(s)	178, 623
DdeI	CTNAG	1 cut(s)	763
DpnI	GATC	7 cut(s)	112, 261, 346, 395, 467, 569, 720
DpnII	GATC	7 cut(s)	110, 259, 344, 393, 465, 567, 718
DraI	TTTAAA	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	711
Eco130I	CCWWGG	2 cut(s)	422, 578
Eco31I	GGTCTC	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	2 cut(s)	422, 578
ErhI	CCWWGG	2 cut(s)	422, 578
FaeI	CATG	3 cut(s)	92, 341, 426
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	3 cut(s)	88, 337, 422
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	246, 249
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	2 cut(s)	246, 249
FspBI	CTAG	7 cut(s)	209, 317, 489, 564, 672, 680, 702
GluI	GCNGC	2 cut(s)	246, 249
GsaI	CCCAGC	1 cut(s)	530
HaeIII	GGCC	2 cut(s)	227, 577
Hin1II	CATG	3 cut(s)	92, 341, 426
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	1 cut(s)	601
HpaI	GTTAAC	1 cut(s)	301
HphI	GGTGA	2 cut(s)	473, 518
Hpy166II	GTNNAC	4 cut(s)	199, 301, 406, 623
Hpy188I	TCNGA	1 cut(s)	640
Hpy188III	TCNNGA	4 cut(s)	170, 209, 308, 680
Hpy8I	GTNNAC	4 cut(s)	199, 301, 406, 623
HpyAV	CCTTC	3 cut(s)	68, 146, 314
HpyCH4III	ACNGT	2 cut(s)	188, 196
HpyCH4IV	ACGT	2 cut(s)	39, 619
HpyCH4V	TGCA	2 cut(s)	359, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 698, 800
HpyF3I	CTNAG	1 cut(s)	763
HpySE526I	ACGT	2 cut(s)	39, 619
Hsp92II	CATG	3 cut(s)	92, 341, 426
Ksp22I	TGATCA	1 cut(s)	393
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	7 cut(s)	110, 259, 344, 393, 465, 567, 718
Lsp1109I	GCAGC	2 cut(s)	232, 235
LweI	GCATC	2 cut(s)	368, 377
MaeI	CTAG	7 cut(s)	209, 317, 489, 564, 672, 680, 702
MaeII	ACGT	2 cut(s)	39, 619
MalI	GATC	7 cut(s)	112, 261, 346, 395, 467, 569, 720
MboI	GATC	7 cut(s)	110, 259, 344, 393, 465, 567, 718
MflI	RGATCY	3 cut(s)	259, 344, 465
MluCI	AATT	6 cut(s)	30, 78, 322, 388, 605, 706
MnlI	CCTC	6 cut(s)	487, 524, 641, 655, 676, 817
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	7 cut(s)	183, 254, 300, 329, 612, 782, 789
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	3 cut(s)	365, 698, 800
NcoI	CCATGG	1 cut(s)	422
NdeII	GATC	7 cut(s)	110, 259, 344, 393, 465, 567, 718
NheI	GCTAGC	1 cut(s)	701
NlaIII	CATG	3 cut(s)	92, 341, 426
NlaIV	GGNNCC	2 cut(s)	261, 576
NmeAIII	GCCGAG	1 cut(s)	85
NspI	RCATGY	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	601
PkrI	GCNGC	2 cut(s)	247, 250
PsiI	TTATAA	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	261, 576
PspPI	GGNCC	2 cut(s)	226, 575
PsuI	RGATCY	3 cut(s)	259, 344, 465
RsaI	GTAC	2 cut(s)	179, 624
RsaNI	GTAC	2 cut(s)	178, 623
SaqAI	TTAA	7 cut(s)	183, 254, 300, 329, 612, 782, 789
SatI	GCNGC	2 cut(s)	246, 249
Sau3AI	GATC	7 cut(s)	110, 259, 344, 393, 465, 567, 718
Sau96I	GGNCC	2 cut(s)	226, 575
ScrFI	CCNGG	1 cut(s)	264
SfaNI	GCATC	2 cut(s)	368, 377
Sse9I	AATT	6 cut(s)	30, 78, 322, 388, 605, 706
SsiI	CCGC	1 cut(s)	722
SspMI	CTAG	7 cut(s)	209, 317, 489, 564, 672, 680, 702
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	2 cut(s)	422, 578
TaaI	ACNGT	2 cut(s)	188, 196
TaiI	ACGT	2 cut(s)	42, 622
TaqI	TCGA	1 cut(s)	714
TasI	AATT	6 cut(s)	30, 78, 322, 388, 605, 706
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	7 cut(s)	183, 254, 300, 329, 612, 782, 789
Tru9I	TTAA	7 cut(s)	183, 254, 300, 329, 612, 782, 789
TseI	GCWGC	2 cut(s)	245, 248
TspDTI	ATGAA	6 cut(s)	69, 105, 165, 173, 234, 455
XapI	RAATTY	1 cut(s)	388
XbaI	TCTAGA	2 cut(s)	208, 679
XceI	RCATGY	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	7 cut(s)	209, 317, 489, 564, 672, 680, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.