Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002212.1

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

42642 .. 43605

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002212.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgggagggaacagaggaagtgcagatagagatcgaggatttgagagggaacttgaagcaatgggagatataaagcaccggaacatcgtgactcttaatggttacacgtattgcaagtctattcaagttgcgcaaaacgtgaagcttcccagagatgccactggatgcaattgcaaaggaagttgtgtagattccaagacctgccaatgtgccaaacttaacggctctgactttccatatgtgcactgtgatggtggcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

87

Amino Acids

9.46

Weight (kDa)

8.51

Isoelectric Point (pI)

5.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	56, 125
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	246
Alw44I	GTGCAC	1 cut(s)	242
ApaLI	GTGCAC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	209
BmsI	GCATC	2 cut(s)	145, 155
BsaAI	YACGTR	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	30
BseGI	GGATG	1 cut(s)	170
BseJI	GATNNNNATC	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	246
BsgI	GTGCAG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	159, 244
BveI	ACCTGC	1 cut(s)	209
CfoI	GCGC	1 cut(s)	133
CviJI	RGCY	2 cut(s)	145, 225
CviKI_1	RGCY	2 cut(s)	145, 225
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
FaiI	YATR	3 cut(s)	71, 238, 240
FauNDI	CATATG	1 cut(s)	238
FokI	GGATG	1 cut(s)	177
FspI	TGCGCA	1 cut(s)	132
GlaI	GCGC	1 cut(s)	132
HapII	CCGG	1 cut(s)	79
HhaI	GCGC	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	2 cut(s)	91, 191
HpaII	CCGG	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	2 cut(s)	107, 138
HpyCH4V	TGCA	5 cut(s)	23, 114, 168, 174, 244
HpySE526I	ACGT	2 cut(s)	107, 138
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	31
LpnPI	CCDG	4 cut(s)	92, 147, 163, 214
LweI	GCATC	2 cut(s)	145, 155
MaeII	ACGT	2 cut(s)	107, 138
MaeIII	GTNAC	2 cut(s)	88, 101
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MfeI	CAATTG	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	3 cut(s)	8, 29, 39
MseI	TTAA	2 cut(s)	96, 219
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	1 cut(s)	79
MunI	CAATTG	1 cut(s)	169
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	88
NsbI	TGCGCA	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	191
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	96, 219
Sau3AI	GATC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	4 cut(s)	110, 141, 147, 203
SfaNI	GCATC	2 cut(s)	145, 155
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	2 cut(s)	110, 141
TaqI	TCGA	1 cut(s)	34
TasI	AATT	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	96, 219
Tru9I	TTAA	2 cut(s)	96, 219
TscAI	CASTG	2 cut(s)	166, 251
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspRI	CASTG	2 cut(s)	166, 251
VneI	GTGCAC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.