Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

30787487 .. 30791420

Gene Structure 3934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G321400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGAGCAGTCAAGCAGTGGAAGACGACGCTCTGGTCAAAGCCACCAGAGCTACCGAAGCGCTTTACCTAGTTCGAGACACTTACTTTCCGCCCAACCCAGATGACAAAATCGCCAAATTGAATGCCGAATCCGATCTCGCTCTCAGCCTCCTCGATTCCATTCCTCCTGAGCAAAGGAAACTTCCAGCACAGCGTGCAAAATACGAATATCTGAGAGGAAAGATATTGGATGTCTTACCGGACTATAGAAAAGAAGCAGAGGATCATCTCTCAAAAGCTGTCAAGTTGAATCCATCTCTTGCAGATGCTTGGCTATGTTTAGCTAACTGCATTTGGAAGAAGGGAGATCTATATTCAGCCAAGAACTGCTTTACTCTTGCACTAAGCAAGGGTCCAAACAAACAGATACTTTGTCAACTGTCCATGCTCGAAAGGAAAATGGCTCAAGGTACTGATAATCAGGCAGAACTTGTTGATGAAAGCATTCAACATGCCAAGGAAGCCATAACTTTGGATGTGAAGGATGGGAATTCTTGGTATAATCTTGGAAATGCATGTCTTACAAGTTTCTTTGTAACTGGAGCTTGGGACCACGCCAAACTTCTGAAGTCTTTGAAGGCATACCAAAATGCTGAAAAGGATGAAAGAATGAAGTCCAATCCAGATCTATATTTTAACTCTGCCACTGTAAACAAATATCTAGAAAACTATGAAAGGGCCCTTACTGGATTTGAAGCTGCCGCTTTAAAGGATCCTGGTCTCAGTGCTATGGAGGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGTTAGATAATTTGTTAAGGGGACATGCTAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGACTGCTGTGAACTTGAACTCCTCGTACAGAAGAGCTACTGTAGATCTTCTGTCAGAGGGTCTGAACAAAGCAGTAGCACTAATAGGAAAAGTGTTATTCTTCATTAAGCATGAGAATGTTGCTCCACTGTATTATTTGGCATGTGATGCAAATCAAATATGCTTCGTTGTGTCCGTTTATGGCATTCAGTATGATTTGATCAAAGAAGGAGATCAGCTGACAATATTGGACCCTTTTCATCGGCATGTGAATTTTTCTTGGAAAGAAAAGTTGTACCAGTTCAAATCATTTCGTGTGGATTTCATAGAACAAATGCTTGTAAATGGAAAGGCTCTGACTCCTCACCAAGCAGTCCGTACCTCAATTTATGCACAACACAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

419

Amino Acids

47.07

Weight (kDa)

8.0

Isoelectric Point (pI)

25.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AciI	CCGC	2 cut(s)	89, 741
AclWI	GGATC	3 cut(s)	270, 746, 759
AcsI	RAATTY	2 cut(s)	529, 1120
AcuI	CTGAAG	1 cut(s)	626
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	4 cut(s)	451, 896, 1145, 1228
AfeI	AGCGCT	1 cut(s)	60
AgsI	TTSAA	8 cut(s)	121, 289, 488, 616, 734, 782, 886, 1153
AjnI	CCWGG	1 cut(s)	754
AloI	GAACNNNNNNTCC	2 cut(s)	872, 904
AluBI	AGCT	7 cut(s)	50, 278, 323, 584, 737, 905, 1087
AluI	AGCT	7 cut(s)	50, 278, 323, 584, 737, 905, 1087
Alw26I	GTCTC	2 cut(s)	69, 764
AlwI	GGATC	3 cut(s)	270, 746, 759
Aor51HI	AGCGCT	1 cut(s)	60
AoxI	GGCC	1 cut(s)	717
ApaI	GGGCCC	1 cut(s)	721
ApeKI	GCWGC	1 cut(s)	737
ApoI	RAATTY	2 cut(s)	529, 1120
Asp700I	GAANNNNTTC	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	5 cut(s)	392, 589, 717, 718, 1099
AsuHPI	GGTGA	1 cut(s)	1205
AvaII	GGWCC	3 cut(s)	392, 589, 1099
BaeGI	GKGCMC	1 cut(s)	721
BamHI	GGATCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	721
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	724
BccI	CCATC	2 cut(s)	301, 518
BciT130I	CCWGG	1 cut(s)	756
BclI	TGATCA	1 cut(s)	1068
BcoDI	GTCTC	2 cut(s)	69, 764
BfaI	CTAG	3 cut(s)	68, 701, 834
BfmI	CTRYAG	2 cut(s)	244, 909
BfoI	RGCGCY	1 cut(s)	62
BglII	AGATCT	4 cut(s)	346, 664, 836, 913
BisI	GCNGC	2 cut(s)	738, 741
BlsI	GCNGC	2 cut(s)	739, 742
Bme1390I	CCNGG	1 cut(s)	756
Bme18I	GGWCC	3 cut(s)	392, 589, 1099
BmgT120I	GGNCC	5 cut(s)	392, 589, 717, 718, 1099
BmiI	GGNNCC	5 cut(s)	393, 590, 719, 753, 1101
BmrFI	CCNGG	1 cut(s)	756
BmsI	GCATC	4 cut(s)	295, 860, 869, 1006
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	600
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	1020
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	1 cut(s)	495
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	872, 902
Bse1I	ACTGG	3 cut(s)	583, 730, 1147
Bse8I	GATNNNNATC	1 cut(s)	1020
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	4 cut(s)	235, 520, 529, 646
BseJI	GATNNNNATC	1 cut(s)	1020
BseMII	CTCAG	4 cut(s)	157, 159, 203, 775
BseNI	ACTGG	3 cut(s)	583, 730, 1147
BseRI	GAGGAG	4 cut(s)	140, 788, 880, 1200
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	1 cut(s)	724
BshFI	GGCC	1 cut(s)	719
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	2 cut(s)	602, 840
BsmAI	GTCTC	2 cut(s)	69, 764
BsmFI	GGGAC	2 cut(s)	602, 840
BsmI	GAATGC	3 cut(s)	127, 483, 1053
BsnI	GGCC	1 cut(s)	719
Bso31I	GGTCTC	1 cut(s)	764
Bsp120I	GGGCCC	1 cut(s)	717
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	9 cut(s)	133, 262, 346, 664, 751, 836, 913, 1068, 1081
BspACI	CCGC	2 cut(s)	89, 741
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	4 cut(s)	156, 160, 204, 774
BspLI	GGNNCC	5 cut(s)	393, 590, 719, 753, 1101
BspPI	GGATC	3 cut(s)	270, 746, 759
BspQI	GCTCTTC	1 cut(s)	895
BspTNI	GGTCTC	1 cut(s)	764
BsrI	ACTGG	3 cut(s)	583, 730, 1147
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	9 cut(s)	133, 262, 346, 664, 751, 836, 913, 1068, 1081
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	4 cut(s)	420, 688, 910, 999
Bst6I	CTCTTC	1 cut(s)	895
BstAPI	GCANNNNNTGC	2 cut(s)	194, 1016
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	5 cut(s)	143, 168, 212, 383, 761
BstF5I	GGATG	4 cut(s)	235, 520, 529, 646
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	9 cut(s)	136, 265, 349, 667, 754, 839, 916, 1071, 1084
BstMAI	GTCTC	2 cut(s)	69, 764
BstMBI	GATC	9 cut(s)	133, 262, 346, 664, 751, 836, 913, 1068, 1081
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 56, 194, 500, 857, 1016
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	5 cut(s)	494, 558, 833, 1014, 1118
BstSCI	CCNGG	1 cut(s)	754
BstSFI	CTRYAG	2 cut(s)	244, 909
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	1 cut(s)	724
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	5 cut(s)	346, 664, 751, 836, 913
BstXI	CCANNNNNNTGG	1 cut(s)	511
BstYI	RGATCY	5 cut(s)	346, 664, 751, 836, 913
BsuRI	GGCC	1 cut(s)	719
BtsCI	GGATG	4 cut(s)	235, 520, 529, 646
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	4 cut(s)	21, 684, 769, 995
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	5 cut(s)	392, 589, 717, 718, 1099
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	4 cut(s)	450, 895, 1144, 1227
CviAII	CATG	8 cut(s)	424, 491, 555, 830, 980, 1011, 1115, 1254
CviQI	GTAC	4 cut(s)	450, 895, 1144, 1227
DdeI	CTNAG	5 cut(s)	143, 168, 212, 383, 761
DpnI	GATC	9 cut(s)	135, 264, 348, 666, 753, 838, 915, 1070, 1083
DpnII	GATC	9 cut(s)	133, 262, 346, 664, 751, 836, 913, 1068, 1081
DraI	TTTAAA	1 cut(s)	747
DraIII	CACNNNGTG	1 cut(s)	194
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	895
EarI	CTCTTC	1 cut(s)	895
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	721
Eco31I	GGTCTC	1 cut(s)	764
Eco47I	GGWCC	3 cut(s)	392, 589, 1099
Eco47III	AGCGCT	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	626
EcoO109I	RGGNCCY	2 cut(s)	717, 718
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	8 cut(s)	427, 494, 558, 833, 983, 1014, 1118, 1257
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	2 cut(s)	602, 840
FatI	CATG	8 cut(s)	423, 490, 554, 829, 979, 1010, 1114, 1253
FbaI	TGATCA	1 cut(s)	1068
Fnu4HI	GCNGC	2 cut(s)	738, 741
FokI	GGATG	4 cut(s)	242, 527, 536, 653
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	2 cut(s)	738, 741
FspBI	CTAG	3 cut(s)	68, 701, 834
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	2 cut(s)	738, 741
GsuI	CTGGAG	1 cut(s)	600
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	719
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	8 cut(s)	427, 494, 558, 833, 983, 1014, 1118, 1257
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	2 cut(s)	416, 793
HindII	GTYRAC	2 cut(s)	416, 793
HinfI	GANTC	4 cut(s)	128, 155, 289, 1207
HpaI	GTTAAC	1 cut(s)	793
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	1205
Hpy166II	GTNNAC	4 cut(s)	416, 691, 793, 880
Hpy188I	TCNGA	7 cut(s)	133, 213, 606, 870, 925, 933, 1206
Hpy188III	TCNNGA	5 cut(s)	74, 167, 662, 701, 800
Hpy8I	GTNNAC	4 cut(s)	416, 691, 793, 880
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	5 cut(s)	334, 514, 610, 806, 1070
HpyCH4III	ACNGT	4 cut(s)	420, 688, 910, 999
HpyCH4V	TGCA	8 cut(s)	197, 302, 330, 380, 554, 851, 1019, 1241
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 56, 194, 500, 857, 1016
HpyF3I	CTNAG	5 cut(s)	143, 168, 212, 383, 761
Hsp92II	CATG	8 cut(s)	427, 494, 558, 833, 983, 1014, 1118, 1257
HspAI	GCGC	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	1068
KspAI	GTTAAC	1 cut(s)	793
Kzo9I	GATC	9 cut(s)	133, 262, 346, 664, 751, 836, 913, 1068, 1081
LguI	GCTCTTC	1 cut(s)	895
LmnI	GCTCC	2 cut(s)	581, 997
Lsp1109I	GCAGC	1 cut(s)	724
LweI	GCATC	4 cut(s)	295, 860, 869, 1006
MaeI	CTAG	3 cut(s)	68, 701, 834
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	9 cut(s)	135, 264, 348, 666, 753, 838, 915, 1070, 1083
MboI	GATC	9 cut(s)	133, 262, 346, 664, 751, 836, 913, 1068, 1081
MboII	GAAGA	5 cut(s)	32, 349, 908, 912, 961
MflI	RGATCY	5 cut(s)	346, 664, 751, 836, 913
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	5 cut(s)	116, 529, 814, 1120, 1233
MlyI	GAGTC	1 cut(s)	1201
Mph1103I	ATGCAT	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	5 cut(s)	675, 746, 792, 821, 975
MslI	CAYNNNNRTG	2 cut(s)	984, 1113
MspA1I	CMGCKG	1 cut(s)	1087
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	756
Mva1269I	GAATGC	3 cut(s)	127, 483, 1053
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	6 cut(s)	47, 56, 194, 500, 857, 1016
NdeII	GATC	9 cut(s)	133, 262, 346, 664, 751, 836, 913, 1068, 1081
NlaIII	CATG	8 cut(s)	427, 494, 558, 833, 983, 1014, 1118, 1257
NlaIV	GGNNCC	5 cut(s)	393, 590, 719, 753, 1101
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	5 cut(s)	494, 558, 833, 1014, 1118
PciSI	GCTCTTC	1 cut(s)	895
PcsI	WCGNNNNNNNCGW	1 cut(s)	1041
PctI	GAATGC	3 cut(s)	127, 483, 1053
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	3 cut(s)	128, 155, 289
PkrI	GCNGC	2 cut(s)	739, 742
PleI	GAGTC	1 cut(s)	1201
PpsI	GAGTC	1 cut(s)	1201
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	5 cut(s)	393, 590, 719, 753, 1101
PspOMI	GGGCCC	1 cut(s)	717
PspPI	GGNCC	5 cut(s)	392, 589, 717, 718, 1099
PsrI	GAACNNNNNNTAC	2 cut(s)	878, 910
PsuI	RGATCY	5 cut(s)	346, 664, 751, 836, 913
PvuII	CAGCTG	1 cut(s)	1087
RsaI	GTAC	4 cut(s)	451, 896, 1145, 1228
RsaNI	GTAC	4 cut(s)	450, 895, 1144, 1227
RseI	CAYNNNNRTG	2 cut(s)	984, 1113
SapI	GCTCTTC	1 cut(s)	895
SaqAI	TTAA	5 cut(s)	675, 746, 792, 821, 975
SatI	GCNGC	2 cut(s)	738, 741
Sau3AI	GATC	9 cut(s)	133, 262, 346, 664, 751, 836, 913, 1068, 1081
Sau96I	GGNCC	5 cut(s)	392, 589, 717, 718, 1099
SchI	GAGTC	1 cut(s)	1201
ScrFI	CCNGG	1 cut(s)	756
SduI	GDGCHC	1 cut(s)	721
SfaNI	GCATC	4 cut(s)	295, 860, 869, 1006
SfcI	CTRYAG	2 cut(s)	244, 909
SinI	GGWCC	3 cut(s)	392, 589, 1099
SmiMI	CAYNNNNRTG	2 cut(s)	984, 1113
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	5 cut(s)	116, 529, 814, 1120, 1233
SsiI	CCGC	2 cut(s)	89, 741
SspI	AATATT	1 cut(s)	1095
SspMI	CTAG	3 cut(s)	68, 701, 834
StyD4I	CCNGG	1 cut(s)	754
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	4 cut(s)	420, 688, 910, 999
TaqI	TCGA	3 cut(s)	73, 153, 429
TasI	AATT	5 cut(s)	116, 529, 814, 1120, 1233
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	3 cut(s)	128, 155, 289
Tru1I	TTAA	5 cut(s)	675, 746, 792, 821, 975
Tru9I	TTAA	5 cut(s)	675, 746, 792, 821, 975
TscAI	CASTG	4 cut(s)	21, 691, 769, 1002
TseI	GCWGC	1 cut(s)	737
TspDTI	ATGAA	7 cut(s)	492, 657, 665, 726, 961, 1097, 1162
TspGWI	ACGGA	2 cut(s)	1033, 1214
TspRI	CASTG	4 cut(s)	21, 691, 769, 1002
VpaK11BI	GGWCC	3 cut(s)	392, 589, 1099
XapI	RAATTY	2 cut(s)	529, 1120
XbaI	TCTAGA	1 cut(s)	700
XceI	RCATGY	5 cut(s)	494, 558, 833, 1014, 1118
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	3 cut(s)	68, 701, 834
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.