Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

85459119 .. 85463055

Gene Structure 3937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCATTGGCATTTGATATCCTCAATGACCTTGTGGAGGTGTGGGATGCAACTGCAGCTGATCCTAAATTGCTGGTCTTTTTGAAATCGTACAGGAATTTCTTACACACTAAATCTGATGTTATGATACTCATCCTCCTTGCTCCTCTGCGAATATGGCCGGAAAATACATGGTACCACCGTGAGTGGTGGTGCGCCGCCAAAAGTGGTGGTGCACGGAAAATTTGTCGGAATTGCACTTTTTTCTCCTCTTGTCAAGATTTTCTACAAAACATGGAATTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

95

Amino Acids

11.14

Weight (kDa)

6.06

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	174
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	158
AcsI	RAATTY	2 cut(s)	97, 222
AfaI	GTAC	2 cut(s)	92, 176
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw21I	GWGCWC	1 cut(s)	217
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	1 cut(s)	158
ApaLI	GTGCAC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	97, 222
Asp718I	GGTACC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	217
BaeI	ACNNNNGTAYC	2 cut(s)	166, 199
BanI	GGYRCC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	2 cut(s)	57, 198
BlsI	GCNGC	2 cut(s)	58, 199
BmiI	GGNNCC	1 cut(s)	176
BmsI	GCATC	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	131
BseGI	GGATG	2 cut(s)	52, 132
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	135, 238
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	37
BsnI	GGCC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	176
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	174
BssMI	GATC	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	182
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	52, 132
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 157
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	52, 132
CfoI	GCGC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	91, 175
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	2 cut(s)	171, 274
CviJI	RGCY	2 cut(s)	59, 160
CviKI_1	RGCY	2 cut(s)	59, 160
CviQI	GTAC	2 cut(s)	91, 175
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	19
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoRV	GATATC	1 cut(s)	19
FaeI	CATG	2 cut(s)	174, 277
FaiI	YATR	4 cut(s)	125, 157, 172, 275
FatI	CATG	2 cut(s)	170, 273
Fnu4HI	GCNGC	2 cut(s)	57, 198
FokI	GGATG	2 cut(s)	59, 119
Fsp4HI	GCNGC	2 cut(s)	57, 198
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	57, 198
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	174, 277
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HpaII	CCGG	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	2 cut(s)	118, 231
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	4 cut(s)	50, 56, 215, 237
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 157
Hsp92II	CATG	2 cut(s)	174, 277
HspAI	GCGC	1 cut(s)	195
KpnI	GGTACC	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	3 cut(s)	59, 79, 174
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	37
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	5 cut(s)	68, 97, 222, 232, 278
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	5 cut(s)	31, 32, 146, 156, 259
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	2 cut(s)	56, 157
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	174, 277
NlaIV	GGNNCC	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	58, 199
PspN4I	GGNNCC	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	2 cut(s)	92, 176
RsaNI	GTAC	2 cut(s)	91, 175
SatI	GCNGC	2 cut(s)	57, 198
Sau3AI	GATC	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	3 cut(s)	33, 42, 61
SfaNI	GCATC	1 cut(s)	37
SfcI	CTRYAG	1 cut(s)	54
Sse9I	AATT	5 cut(s)	68, 97, 222, 232, 278
SsiI	CCGC	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	182
TasI	AATT	5 cut(s)	68, 97, 222, 232, 278
TauI	GCSGC	1 cut(s)	200
TseI	GCWGC	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	232
VneI	GTGCAC	1 cut(s)	213
XagI	CCTNNNNNAGG	1 cut(s)	35
XapI	RAATTY	2 cut(s)	97, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.