Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

38236867 .. 38241671

Gene Structure 4805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG202700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAATGTTCTTGTTTATAATGGTGAGATCTTTGGGGGGATTGAGACTGCTAGTGAGGAGAATGATGGTGAAGTTCTAATGGGGTTGCTGGGAGGGTGTGAAAGTTGTGTGCCGAATGCAGAACTTGTTGATGAAAGCATAAAACATGCCAAGGAAGCTATAACTTTGGATGTCAAGGATGGGAATTCATGGTACAATCTTGGAAATGCATGTCTTACAAGTTTTTTTGTGACCGGAGCCTGGGACCACACCAAACTCCTGCAGTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTGGAAAACTATGAAATGACCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTAGTCTCAATGCTACCGAAGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTGTTAAGGGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGGCTGTGATGACCAATCATTTGAATGCCGTTAGAAACGAAAGTTGGGCTGTATCATTAGGTGCAGACATGGAGACACAACAACCACTAGACCCTTTGTACCATTATAGCACGGAGATGAATTCTGCTATGAATAATACAGAGGAAGAGACTAACAATCACTGTGTTAAGGAATTGAGTGCAGCTAAGATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

239

Amino Acids

26.48

Weight (kDa)

4.77

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AclWI	GGATC	2 cut(s)	401, 414
AcsI	RAATTY	2 cut(s)	184, 643
AfaI	GTAC	3 cut(s)	194, 326, 623
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	3 cut(s)	389, 437, 547
AjnI	CCWGG	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	550, 582
AluBI	AGCT	4 cut(s)	158, 392, 463, 707
AluI	AGCT	4 cut(s)	158, 392, 463, 707
Alw26I	GTCTC	5 cut(s)	38, 270, 419, 590, 665
AlwI	GGATC	2 cut(s)	401, 414
ApeKI	GCWGC	3 cut(s)	392, 395, 704
ApoI	RAATTY	2 cut(s)	184, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	526, 558
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	35, 80
AvaII	GGWCC	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	406
BbvI	GCAGC	3 cut(s)	379, 382, 716
BccI	CCATC	2 cut(s)	59, 173
BceAI	ACGGC	1 cut(s)	536
BciT130I	CCWGG	1 cut(s)	241
BcoDI	GTCTC	5 cut(s)	38, 270, 419, 590, 665
BfaI	CTAG	4 cut(s)	51, 411, 464, 611
BfmI	CTRYAG	1 cut(s)	260
BglII	AGATCT	2 cut(s)	27, 491
BisI	GCNGC	3 cut(s)	393, 396, 705
BlsI	GCNGC	3 cut(s)	394, 397, 706
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	3 cut(s)	238, 245, 408
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	3 cut(s)	515, 524, 702
BsaJI	CCNNGG	2 cut(s)	150, 240
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	2 cut(s)	150, 240
BseGI	GGATG	3 cut(s)	175, 184, 309
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	379, 382, 716
BseYI	CCCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	257, 495
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	5 cut(s)	38, 270, 419, 590, 665
BsmFI	GGGAC	2 cut(s)	257, 495
BsmI	GAATGC	2 cut(s)	121, 553
Bsp143I	GATC	3 cut(s)	27, 406, 491
BspLI	GGNNCC	3 cut(s)	238, 245, 408
BspMAI	CTGCAG	1 cut(s)	264
BspPI	GGATC	2 cut(s)	401, 414
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	150, 240
BssMI	GATC	3 cut(s)	27, 406, 491
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	335, 343, 686
Bst6I	CTCTTC	2 cut(s)	423, 663
BstDEI	CTNAG	1 cut(s)	708
BstF5I	GGATG	3 cut(s)	175, 184, 309
BstKTI	GATC	3 cut(s)	30, 409, 494
BstMAI	GTCTC	5 cut(s)	38, 270, 419, 590, 665
BstMBI	GATC	3 cut(s)	27, 406, 491
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 512
BstNI	CCWGG	1 cut(s)	241
BstNSI	RCATGY	3 cut(s)	149, 213, 488
BstSCI	CCNGG	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	379, 382, 716
BstX2I	RGATCY	3 cut(s)	27, 406, 491
BstYI	RGATCY	3 cut(s)	27, 406, 491
BtsCI	GGATG	3 cut(s)	175, 184, 309
BtsIMutI	CAGTG	1 cut(s)	682
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	3 cut(s)	193, 325, 622
CviAII	CATG	5 cut(s)	146, 189, 210, 485, 592
CviJI	RGCY	7 cut(s)	158, 239, 392, 463, 527, 572, 707
CviKI_1	RGCY	7 cut(s)	158, 239, 392, 463, 527, 572, 707
CviQI	GTAC	3 cut(s)	193, 325, 622
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	3 cut(s)	29, 408, 493
DpnII	GATC	3 cut(s)	27, 406, 491
DraI	TTTAAA	1 cut(s)	402
Eam1104I	CTCTTC	2 cut(s)	423, 663
EarI	CTCTTC	2 cut(s)	423, 663
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	244
EcoRI	GAATTC	2 cut(s)	184, 643
EcoRII	CCWGG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	5 cut(s)	149, 192, 213, 488, 595
FaqI	GGGAC	2 cut(s)	257, 495
FatI	CATG	5 cut(s)	145, 188, 209, 484, 591
Fnu4HI	GCNGC	3 cut(s)	393, 396, 705
FokI	GGATG	3 cut(s)	182, 191, 316
Fsp4HI	GCNGC	3 cut(s)	393, 396, 705
FspBI	CTAG	4 cut(s)	51, 411, 464, 611
GluI	GCNGC	3 cut(s)	393, 396, 705
GsaI	CCCAGC	1 cut(s)	92
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	5 cut(s)	149, 192, 213, 488, 595
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	2 cut(s)	35, 80
Hpy166II	GTNNAC	2 cut(s)	346, 448
Hpy188III	TCNNGA	3 cut(s)	317, 356, 455
Hpy8I	GTNNAC	2 cut(s)	346, 448
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	3 cut(s)	335, 343, 686
HpyCH4V	TGCA	6 cut(s)	119, 209, 262, 506, 587, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 512
HpyF3I	CTNAG	1 cut(s)	708
Hsp92II	CATG	5 cut(s)	149, 192, 213, 488, 595
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	27, 406, 491
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	3 cut(s)	379, 382, 716
LweI	GCATC	3 cut(s)	515, 524, 702
MaeI	CTAG	4 cut(s)	51, 411, 464, 611
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	3 cut(s)	29, 408, 493
MboI	GATC	3 cut(s)	27, 406, 491
MboII	GAAGA	2 cut(s)	440, 680
MflI	RGATCY	3 cut(s)	27, 406, 491
MluCI	AATT	4 cut(s)	184, 469, 643, 695
MnlI	CCTC	4 cut(s)	49, 86, 424, 658
Mph1103I	ATGCAT	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	5 cut(s)	330, 401, 447, 476, 690
MslI	CAYNNNNRTG	2 cut(s)	546, 638
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	241
Mva1269I	GAATGC	2 cut(s)	121, 553
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	155, 512
NdeII	GATC	3 cut(s)	27, 406, 491
NlaIII	CATG	5 cut(s)	149, 192, 213, 488, 595
NlaIV	GGNNCC	3 cut(s)	238, 245, 408
NmuCI	GTSAC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	3 cut(s)	149, 213, 488
PctI	GAATGC	2 cut(s)	121, 553
PdmI	GAANNNNTTC	1 cut(s)	432
PkrI	GCNGC	3 cut(s)	394, 397, 706
PsiI	TTATAA	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	238, 245, 408
PspPI	GGNCC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	264
PsuI	RGATCY	3 cut(s)	27, 406, 491
RsaI	GTAC	3 cut(s)	194, 326, 623
RsaNI	GTAC	3 cut(s)	193, 325, 622
RseI	CAYNNNNRTG	2 cut(s)	546, 638
SaqAI	TTAA	5 cut(s)	330, 401, 447, 476, 690
SatI	GCNGC	3 cut(s)	393, 396, 705
Sau3AI	GATC	3 cut(s)	27, 406, 491
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	241
SetI	ASST	8 cut(s)	160, 324, 394, 435, 453, 465, 586, 709
SfaNI	GCATC	3 cut(s)	515, 524, 702
SfcI	CTRYAG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	546, 638
Sse9I	AATT	4 cut(s)	184, 469, 643, 695
SspMI	CTAG	4 cut(s)	51, 411, 464, 611
StyD4I	CCNGG	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	335, 343, 686
TasI	AATT	4 cut(s)	184, 469, 643, 695
TatI	WGTACW	1 cut(s)	324
Tru1I	TTAA	5 cut(s)	330, 401, 447, 476, 690
Tru9I	TTAA	5 cut(s)	330, 401, 447, 476, 690
TscAI	CASTG	1 cut(s)	689
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	3 cut(s)	392, 395, 704
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	8 cut(s)	17, 147, 177, 312, 320, 381, 656, 668
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	1 cut(s)	689
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	2 cut(s)	184, 643
XceI	RCATGY	3 cut(s)	149, 213, 488
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	4 cut(s)	51, 411, 464, 611
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.