Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

60679165 .. 60681503

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG349200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAGCACTCCAGCAGTGGAAAACGACGCACTGGAGAAAGCCGGTAGTGCCACCGAAGCTCTTTACTTAACTCGAGATACCTACTTTCCGGCGAACCCCGACGACAAAATCGCCAGACTAAAATCAGAATCCGATCTCGCTCTCAACCTCCTCGATTCCATTCCTCCCGAGCAAAGGAAGCTTCTAACGCAGCGTGCAAGGTACGAATATCTGAGAGGGAAGATATTGGATGTATTGCCGGAGTATAAAAGAGAGGCTGAGGATCATCTCTCGAAAGCGGTTAAGTTGAATCCATCTCTTGCGGATGCGTGGCTGTGCTTAGGTAACTGCATTTGGAAGAAGGGAGATCTGTCTTCGGCCAACAACTGCTTTACTCTTGCACTAAGCAAAGGTCCAAACAAACAGATACTATGTCAACTCTCAATGCTCGAAAGGAAAATGGCCCAAGGTGCCGATAATCAGGCAGAACTTGTTGATGAAAGCATAAAACATGCCAAGGAAGCTATAACTTTGGATGTCAAGGATGGGAATTCATGGTACAATCTTGGAAATGCATGTCTTACAAGTTTTTTTGTGACCGGAGCCTGGGACCACGCCAAACTTCTGCAGTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACCGAAGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTGTTAAGGTTGCAAGCCACCATTTTGCGGACTGCATTTGATGAGATTGAGAAACTGGAGACTAAAACAAGGACACTAAGAACTCTTATTAATATTGATCACAATCAAGTAAAGAAGCACCAGGTTAAGGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

317

Amino Acids

35.72

Weight (kDa)

5.86

Isoelectric Point (pI)

30.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	449
AciI	CCGC	3 cut(s)	278, 302, 844
AclWI	GGATC	3 cut(s)	270, 746, 759
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	529
AfaI	GTAC	3 cut(s)	203, 539, 671
AfiI	CCNNNNNNNGG	4 cut(s)	174, 585, 843, 943
AgsI	TTSAA	3 cut(s)	289, 734, 782
AjnI	CCWGG	3 cut(s)	584, 754, 936
AluBI	AGCT	5 cut(s)	59, 181, 503, 737, 808
AluI	AGCT	5 cut(s)	59, 181, 503, 737, 808
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	615, 764, 869
AlwI	GGATC	3 cut(s)	270, 746, 759
Ama87I	CYCGRG	2 cut(s)	72, 167
AoxI	GGCC	3 cut(s)	357, 441, 717
ApeKI	GCWGC	3 cut(s)	190, 737, 740
ApoI	RAATTY	1 cut(s)	529
AseI	ATTAAT	1 cut(s)	906
Asp700I	GAANNNNTTC	1 cut(s)	777
AspS9I	GGNCC	4 cut(s)	392, 442, 589, 718
AvaI	CYCGRG	2 cut(s)	72, 167
AvaII	GGWCC	2 cut(s)	392, 589
BamHI	GGATCC	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	202, 724, 727
BccI	CCATC	2 cut(s)	301, 518
BciT130I	CCWGG	3 cut(s)	586, 756, 938
BclI	TGATCA	1 cut(s)	913
BcoDI	GTCTC	3 cut(s)	615, 764, 869
BfaI	CTAG	2 cut(s)	701, 809
BfmI	CTRYAG	1 cut(s)	605
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	3 cut(s)	191, 738, 741
BlsI	GCNGC	3 cut(s)	192, 739, 742
Bme1390I	CCNGG	3 cut(s)	586, 756, 938
Bme18I	GGWCC	2 cut(s)	392, 589
BmeT110I	CYCGRG	2 cut(s)	72, 167
BmgT120I	GGNCC	4 cut(s)	392, 442, 589, 718
BmiI	GGNNCC	4 cut(s)	451, 583, 590, 753
BmrFI	CCNGG	3 cut(s)	586, 756, 938
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	2 cut(s)	53, 893
Bpu10I	CCTNAGC	2 cut(s)	258, 319
BsaBI	GATNNNNATC	1 cut(s)	918
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	3 cut(s)	445, 495, 585
BsaWI	WCCGGW	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 585, 843, 943
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	3 cut(s)	36, 730, 876
Bse8I	GATNNNNATC	1 cut(s)	918
BseBI	CCWGG	3 cut(s)	586, 756, 938
BseDI	CCNNGG	3 cut(s)	445, 495, 585
BseGI	GGATG	5 cut(s)	235, 310, 520, 529, 654
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	4 cut(s)	174, 585, 843, 943
BseMII	CTCAG	2 cut(s)	203, 249
BseNI	ACTGG	3 cut(s)	36, 730, 876
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	202, 724, 727
BshFI	GGCC	3 cut(s)	359, 443, 719
BshNI	GGYRCC	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	72, 167
BsiSI	CCGG	4 cut(s)	42, 89, 239, 579
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	4 cut(s)	174, 585, 843, 943
BsmAI	GTCTC	3 cut(s)	615, 764, 869
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	3 cut(s)	359, 443, 719
Bso31I	GGTCTC	1 cut(s)	764
BsoBI	CYCGRG	2 cut(s)	72, 167
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	133, 262, 346, 751, 913
BspACI	CCGC	3 cut(s)	278, 302, 844
BspANI	GGCC	3 cut(s)	359, 443, 719
BspCNI	CTCAG	2 cut(s)	204, 250
BspLI	GGNNCC	4 cut(s)	451, 583, 590, 753
BspMAI	CTGCAG	1 cut(s)	609
BspPI	GGATC	3 cut(s)	270, 746, 759
BspT107I	GGYRCC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	764
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	3 cut(s)	36, 730, 876
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	445, 495, 585
BssMI	GATC	5 cut(s)	133, 262, 346, 751, 913
BssT1I	CCWWGG	2 cut(s)	445, 495
Bst2UI	CCWGG	3 cut(s)	586, 756, 938
Bst4CI	ACNGT	2 cut(s)	680, 688
Bst6I	CTCTTC	1 cut(s)	768
BstC8I	GCNNGC	2 cut(s)	195, 831
BstDEI	CTNAG	5 cut(s)	212, 258, 319, 383, 893
BstF5I	GGATG	5 cut(s)	235, 310, 520, 529, 654
BstKTI	GATC	5 cut(s)	136, 265, 349, 754, 916
BstMAI	GTCTC	3 cut(s)	615, 764, 869
BstMBI	GATC	5 cut(s)	133, 262, 346, 751, 913
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 56, 178, 187, 449, 500
BstNI	CCWGG	3 cut(s)	586, 756, 938
BstNSI	RCATGY	2 cut(s)	494, 558
BstSCI	CCNGG	3 cut(s)	584, 754, 936
BstSFI	CTRYAG	1 cut(s)	605
BstV1I	GCAGC	3 cut(s)	202, 724, 727
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	2 cut(s)	346, 751
BstYI	RGATCY	2 cut(s)	346, 751
BsuRI	GGCC	3 cut(s)	359, 443, 719
BtsCI	GGATG	5 cut(s)	235, 310, 520, 529, 654
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 29
Cac8I	GCNNGC	2 cut(s)	195, 831
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	4 cut(s)	392, 442, 589, 718
CseI	GACGC	1 cut(s)	35
CsiI	ACCWGGT	1 cut(s)	936
Csp6I	GTAC	3 cut(s)	202, 538, 670
CviAII	CATG	3 cut(s)	491, 534, 555
CviQI	GTAC	3 cut(s)	202, 538, 670
DdeI	CTNAG	5 cut(s)	212, 258, 319, 383, 893
DpnI	GATC	5 cut(s)	135, 264, 348, 753, 915
DpnII	GATC	5 cut(s)	133, 262, 346, 751, 913
DraI	TTTAAA	1 cut(s)	747
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
Eco130I	CCWWGG	2 cut(s)	445, 495
Eco31I	GGTCTC	1 cut(s)	764
Eco47I	GGWCC	2 cut(s)	392, 589
Eco88I	CYCGRG	2 cut(s)	72, 167
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	3 cut(s)	584, 754, 936
EcoT14I	CCWWGG	2 cut(s)	445, 495
EcoT22I	ATGCAT	1 cut(s)	556
ErhI	CCWWGG	2 cut(s)	445, 495
FaeI	CATG	3 cut(s)	494, 537, 558
FaiI	YATR	9 cut(s)	246, 412, 485, 492, 506, 535, 556, 622, 711
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	3 cut(s)	490, 533, 554
FbaI	TGATCA	1 cut(s)	913
Fnu4HI	GCNGC	3 cut(s)	191, 738, 741
FokI	GGATG	5 cut(s)	242, 317, 527, 536, 661
Fsp4HI	GCNGC	3 cut(s)	191, 738, 741
FspBI	CTAG	2 cut(s)	701, 809
GluI	GCNGC	3 cut(s)	191, 738, 741
GsuI	CTGGAG	2 cut(s)	53, 893
HaeIII	GGCC	3 cut(s)	359, 443, 719
HapII	CCGG	4 cut(s)	42, 89, 239, 579
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	494, 537, 558
HincII	GTYRAC	2 cut(s)	416, 793
HindII	GTYRAC	2 cut(s)	416, 793
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	3 cut(s)	128, 155, 289
HpaI	GTTAAC	1 cut(s)	793
HpaII	CCGG	4 cut(s)	42, 89, 239, 579
Hpy166II	GTNNAC	3 cut(s)	416, 691, 793
Hpy188I	TCNGA	3 cut(s)	127, 133, 213
Hpy188III	TCNNGA	6 cut(s)	74, 167, 271, 662, 701, 800
Hpy8I	GTNNAC	3 cut(s)	416, 691, 793
Hpy99I	CGWCG	2 cut(s)	29, 104
HpyAV	CCTTC	2 cut(s)	334, 806
HpyCH4III	ACNGT	2 cut(s)	680, 688
HpyCH4V	TGCA	7 cut(s)	197, 330, 380, 554, 607, 829, 851
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 56, 178, 187, 449, 500
HpyF3I	CTNAG	5 cut(s)	212, 258, 319, 383, 893
Hsp92II	CATG	3 cut(s)	494, 537, 558
Ksp22I	TGATCA	1 cut(s)	913
KspAI	GTTAAC	1 cut(s)	793
Kzo9I	GATC	5 cut(s)	133, 262, 346, 751, 913
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	3 cut(s)	202, 724, 727
LweI	GCATC	1 cut(s)	295
MabI	ACCWGGT	1 cut(s)	936
MaeI	CTAG	2 cut(s)	701, 809
MaeIII	GTNAC	2 cut(s)	323, 574
MalI	GATC	5 cut(s)	135, 264, 348, 753, 915
MboI	GATC	5 cut(s)	133, 262, 346, 751, 913
MboII	GAAGA	4 cut(s)	232, 345, 349, 785
MfeI	CAATTG	1 cut(s)	949
MflI	RGATCY	2 cut(s)	346, 751
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	529, 814, 949
MnlI	CCTC	7 cut(s)	158, 161, 174, 209, 247, 253, 769
Mph1103I	ATGCAT	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	777
MseI	TTAA	8 cut(s)	68, 282, 675, 746, 792, 821, 906, 942
MspI	CCGG	4 cut(s)	42, 89, 239, 579
MspR9I	CCNGG	3 cut(s)	586, 756, 938
MunI	CAATTG	1 cut(s)	949
MvaI	CCWGG	3 cut(s)	586, 756, 938
MwoI	GCNNNNNNNGC	6 cut(s)	47, 56, 178, 187, 449, 500
NdeII	GATC	5 cut(s)	133, 262, 346, 751, 913
NlaIII	CATG	3 cut(s)	494, 537, 558
NlaIV	GGNNCC	4 cut(s)	451, 583, 590, 753
NmuCI	GTSAC	1 cut(s)	574
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	2 cut(s)	494, 558
PaeR7I	CTCGAG	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	3 cut(s)	128, 155, 289
PkrI	GCNGC	3 cut(s)	192, 739, 742
PshBI	ATTAAT	1 cut(s)	906
Psp6I	CCWGG	3 cut(s)	584, 754, 936
PspGI	CCWGG	3 cut(s)	584, 754, 936
PspN4I	GGNNCC	4 cut(s)	451, 583, 590, 753
PspPI	GGNCC	4 cut(s)	392, 442, 589, 718
PstI	CTGCAG	1 cut(s)	609
PsuI	RGATCY	2 cut(s)	346, 751
RsaI	GTAC	3 cut(s)	203, 539, 671
RsaNI	GTAC	3 cut(s)	202, 538, 670
SaqAI	TTAA	8 cut(s)	68, 282, 675, 746, 792, 821, 906, 942
SatI	GCNGC	3 cut(s)	191, 738, 741
Sau3AI	GATC	5 cut(s)	133, 262, 346, 751, 913
Sau96I	GGNCC	4 cut(s)	392, 442, 589, 718
ScrFI	CCNGG	3 cut(s)	586, 756, 938
SduI	GDGCHC	1 cut(s)	8
SexAI	ACCWGGT	1 cut(s)	936
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	605
Sfr274I	CTCGAG	1 cut(s)	72
SinI	GGWCC	2 cut(s)	392, 589
SlaI	CTCGAG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	529, 814, 949
SsiI	CCGC	3 cut(s)	278, 302, 844
SspI	AATATT	1 cut(s)	910
SspMI	CTAG	2 cut(s)	701, 809
StyD4I	CCNGG	3 cut(s)	584, 754, 936
StyI	CCWWGG	2 cut(s)	445, 495
TaaI	ACNGT	2 cut(s)	680, 688
TaqI	TCGA	4 cut(s)	73, 153, 272, 429
TasI	AATT	3 cut(s)	529, 814, 949
TatI	WGTACW	1 cut(s)	669
TfiI	GAWTC	3 cut(s)	128, 155, 289
Tru1I	TTAA	8 cut(s)	68, 282, 675, 746, 792, 821, 906, 942
Tru9I	TTAA	8 cut(s)	68, 282, 675, 746, 792, 821, 906, 942
TscAI	CASTG	2 cut(s)	21, 36
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	3 cut(s)	190, 737, 740
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	5 cut(s)	492, 522, 657, 665, 726
TspRI	CASTG	2 cut(s)	21, 36
VpaK11BI	GGWCC	2 cut(s)	392, 589
VspI	ATTAAT	1 cut(s)	906
XapI	RAATTY	1 cut(s)	529
XbaI	TCTAGA	1 cut(s)	700
XceI	RCATGY	2 cut(s)	494, 558
XhoI	CTCGAG	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	2 cut(s)	701, 809
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.