Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

64401673 .. 64402140

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG454800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGAGGAAGACAGACCAGATGATGCCTGTGATGCCTACCATACATATTTAGGTGTAGCAGGACCTTCCCTCCTTGAATATCAAATGGTGAAACCCACAAGTCCATCTTATGCTTTGCCAGTTGATGTTGTAAATATGGTTATCTTAGCAAGCATAAAGGAGTTAAGGCTTAAAGCTGCTGGTGCATTGTTTTCACTTATTTGTGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

70

Amino Acids

7.63

Weight (kDa)

4.45

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	77
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmsI	GCATC	2 cut(s)	13, 22
BpiI	GAAGAC	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bse1I	ACTGG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 182
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	62
CviJI	RGCY	2 cut(s)	169, 176
CviKI_1	RGCY	2 cut(s)	169, 176
DdeI	CTNAG	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	62
FaiI	YATR	5 cut(s)	42, 46, 111, 137, 155
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
Fnu4HI	GCNGC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
HphI	GGTGA	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 182
HpyF3I	CTNAG	1 cut(s)	145
LpnPI	CCDG	5 cut(s)	30, 40, 45, 132, 165
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	2 cut(s)	13, 22
MboII	GAAGA	1 cut(s)	20
MnlI	CCTC	2 cut(s)	80, 199
MseI	TTAA	2 cut(s)	164, 171
MwoI	GCNNNNNNNGC	2 cut(s)	32, 182
PkrI	GCNGC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	62
PspPPI	RGGWCCY	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	164, 171
SatI	GCNGC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	62
SetI	ASST	4 cut(s)	55, 67, 178, 210
SfaNI	GCATC	2 cut(s)	13, 22
SgeI	CNNG	8 cut(s)	29, 39, 72, 86, 111, 131, 162, 192
SinI	GGWCC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	164, 171
Tru9I	TTAA	2 cut(s)	164, 171
TseI	GCWGC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.