Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

69368497 .. 69384339

Gene Structure 15843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG400700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAAATGGAGGGACGCCTTGAACAAAATCAGCAGCATCTTTGGCTGGGTATGTGGGAGTTCTGAGCCAGAAGGACAGCTTGTCCAACAAATCGCGGAATTTTTCTGCAGCAAACCTATTGAAATTAAGTCGACGGAAGATATTGAAACTCATGGAACTTCTCGGCCCTTGAGGCATGATCAGTTGCTGCCTTGCTGGGTTATTCACTCCAGTCACTCCACCGAATCTAGGATGTTAAAGAGGAACTGTGTGAATCAGAGGGCCACAAATGAAAGCTTGAAGAGAATAAAGATCAAAAGTGAAACGAAACTGAAAAGCATTGGAGTTTCAAGCTCTTTTAAGATGTTTAATTTTTCCATGGATTCATTCCTTCAAGCAATGGGAGGGAACAGAGGAAGTGCAGATAGAGATCGAGGATTTGAGAGGGAACTTAAAGCAATGGGAGATATAAAGCACCGGAACATCGTGACTCTTAATGGTTACACGTATTGCAAGTCTATTCAAGTTGCACAAAACGTGAAGCTTCCCAGAGATGCCACTGGATGCAATTGCAAAGGAAGTTGTGTAGATTCCAAGACCTGCCAATGTGCCAAACTTAACGGCTCTGACTTTCCATATGTGAACCGTGATGGTGGCAGATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGGTTATGGACCTTCTGTGTCAATCGTACTTCTCAGACGGGGCTCAAGTACCGATTTGAGCTTGATAGCAGGGTTGGGGCGCCACTGCTTAGAATCGGAGTGCATGTCGCTTGGCAACAGAGCTTGGAATCAGAGATCTTCCTCATGTGGCGGCGAAGCTTTGGAGGTCTTCTTCGCGTGGTGGCGGTGCTTTGGAGTCTTCTTCGAGGTTGACGGCGACGGCAGACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

304

Amino Acids

33.84

Weight (kDa)

8.83

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-SET	PF05033	158 - 229	1.5e-10	Pre-SET motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	587
AccB1I	GGYRCC	1 cut(s)	762
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccI	GTMKAC	1 cut(s)	131
AccII	CGCG	2 cut(s)	95, 860
AciI	CCGC	3 cut(s)	95, 834, 868
AcsI	RAATTY	1 cut(s)	98
AcyI	GRCGYC	2 cut(s)	15, 763
AfaI	GTAC	2 cut(s)	711, 733
AfiI	CCNNNNNNNGG	2 cut(s)	228, 683
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	9 cut(s)	22, 122, 146, 280, 330, 374, 503, 647, 668
AhdI	GACNNNNNGTC	1 cut(s)	80
AluBI	AGCT	7 cut(s)	79, 276, 333, 523, 744, 806, 842
AluI	AGCT	7 cut(s)	79, 276, 333, 523, 744, 806, 842
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	3 cut(s)	164, 261, 674
ApeKI	GCWGC	3 cut(s)	33, 108, 187
ApoI	RAATTY	1 cut(s)	98
AseI	ATTAAT	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	765
AspS9I	GGNCC	4 cut(s)	165, 261, 674, 692
AvaII	GGWCC	1 cut(s)	692
BanI	GGYRCC	1 cut(s)	762
BanII	GRGCYC	1 cut(s)	728
BbsI	GAAGAC	2 cut(s)	844, 874
BbvI	GCAGC	3 cut(s)	45, 120, 174
BccI	CCATC	1 cut(s)	623
BceAI	ACGGC	2 cut(s)	616, 913
BclI	TGATCA	1 cut(s)	178
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	106
BfoI	RGCGCY	1 cut(s)	766
BfuAI	ACCTGC	1 cut(s)	587
BglI	GCCNNNNNGGC	1 cut(s)	172
BglII	AGATCT	1 cut(s)	818
BisI	GCNGC	4 cut(s)	34, 109, 188, 835
BlsI	GCNGC	4 cut(s)	35, 110, 189, 836
Bme18I	GGWCC	1 cut(s)	692
BmeRI	GACNNNNNGTC	1 cut(s)	80
BmgT120I	GGNCC	4 cut(s)	165, 261, 674, 692
BmiI	GGNNCC	1 cut(s)	764
BmsI	GCATC	3 cut(s)	45, 523, 533
BpiI	GAAGAC	2 cut(s)	844, 874
BpmI	CTGGAG	1 cut(s)	193
BpuEI	CTTGAG	2 cut(s)	190, 712
BsaAI	YACGTR	1 cut(s)	486
BsaBI	GATNNNNATC	1 cut(s)	408
BsaHI	GRCGYC	2 cut(s)	15, 763
BsaJI	CCNNGG	2 cut(s)	357, 651
BsaWI	WCCGGW	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	773, 803
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 683
Bse1I	ACTGG	2 cut(s)	210, 544
Bse3DI	GCAATG	2 cut(s)	384, 444
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	357, 651
BseGI	GGATG	3 cut(s)	237, 548, 661
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	228, 683
BseMI	GCAATG	2 cut(s)	384, 444
BseMII	CTCAG	2 cut(s)	54, 730
BseNI	ACTGG	2 cut(s)	210, 544
BseXI	GCAGC	3 cut(s)	45, 120, 174
BseYI	CCCAGC	2 cut(s)	45, 195
BsgI	GTGCAG	1 cut(s)	420
Bsh1236I	CGCG	2 cut(s)	95, 860
BshFI	GGCC	3 cut(s)	166, 263, 676
BshNI	GGYRCC	1 cut(s)	762
BsiSI	CCGG	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	228, 683
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	3 cut(s)	166, 263, 676
Bsp1286I	GDGCHC	1 cut(s)	728
Bsp143I	GATC	4 cut(s)	178, 291, 409, 818
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	3 cut(s)	95, 834, 868
BspANI	GGCC	3 cut(s)	166, 263, 676
BspCNI	CTCAG	2 cut(s)	55, 729
BspFNI	CGCG	2 cut(s)	95, 860
BspLI	GGNNCC	1 cut(s)	764
BspMAI	CTGCAG	1 cut(s)	110
BspMI	ACCTGC	1 cut(s)	587
BspT107I	GGYRCC	1 cut(s)	762
BsrDI	GCAATG	2 cut(s)	384, 444
BsrI	ACTGG	2 cut(s)	210, 544
BssECI	CCNNGG	2 cut(s)	357, 651
BssMI	GATC	4 cut(s)	178, 291, 409, 818
BssNI	GRCGYC	2 cut(s)	15, 763
BssT1I	CCWWGG	2 cut(s)	357, 651
Bst4CI	ACNGT	2 cut(s)	248, 626
Bst6I	CTCTTC	1 cut(s)	275
BstACI	GRCGYC	2 cut(s)	15, 763
BstBAI	YACGTR	1 cut(s)	486
BstDEI	CTNAG	3 cut(s)	63, 716, 772
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	3 cut(s)	237, 548, 661
BstFNI	CGCG	2 cut(s)	95, 860
BstH2I	RGCGCY	1 cut(s)	766
BstHHI	GCGC	1 cut(s)	765
BstKTI	GATC	4 cut(s)	181, 294, 412, 821
BstMBI	GATC	4 cut(s)	178, 291, 409, 818
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 172
BstNSI	RCATGY	1 cut(s)	790
BstSFI	CTRYAG	1 cut(s)	106
BstUI	CGCG	2 cut(s)	95, 860
BstV1I	GCAGC	3 cut(s)	45, 120, 174
BstV2I	GAAGAC	2 cut(s)	844, 874
BstX2I	RGATCY	1 cut(s)	818
BstYI	RGATCY	1 cut(s)	818
BsuRI	GGCC	3 cut(s)	166, 263, 676
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	237, 548, 661
BtsI	GCAGTG	1 cut(s)	766
BtsIMutI	CAGTG	2 cut(s)	537, 766
BveI	ACCTGC	1 cut(s)	587
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	765
Cfr13I	GGNCC	4 cut(s)	165, 261, 674, 692
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	710, 732
CviAII	CATG	5 cut(s)	152, 176, 358, 787, 828
CviQI	GTAC	2 cut(s)	710, 732
DdeI	CTNAG	3 cut(s)	63, 716, 772
DinI	GGCGCC	1 cut(s)	764
DpnI	GATC	4 cut(s)	180, 293, 411, 820
DpnII	GATC	4 cut(s)	178, 291, 409, 818
DriI	GACNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	275
Eam1105I	GACNNNNNGTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	2 cut(s)	357, 651
Eco24I	GRGCYC	1 cut(s)	728
Eco47I	GGWCC	1 cut(s)	692
EcoT14I	CCWWGG	2 cut(s)	357, 651
EcoT38I	GRGCYC	1 cut(s)	728
EgeI	GGCGCC	1 cut(s)	764
EheI	GGCGCC	1 cut(s)	764
ErhI	CCWWGG	2 cut(s)	357, 651
FaeI	CATG	5 cut(s)	155, 179, 361, 790, 831
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	5 cut(s)	151, 175, 357, 786, 827
FauNDI	CATATG	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	4 cut(s)	34, 109, 188, 835
FokI	GGATG	3 cut(s)	244, 555, 668
FriOI	GRGCYC	1 cut(s)	728
Fsp4HI	GCNGC	4 cut(s)	34, 109, 188, 835
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	764
GluI	GCNGC	4 cut(s)	34, 109, 188, 835
GsaI	CCCAGC	2 cut(s)	49, 199
GsuI	CTGGAG	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	766
HaeIII	GGCC	3 cut(s)	166, 263, 676
HapII	CCGG	1 cut(s)	457
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	765
Hin1I	GRCGYC	2 cut(s)	15, 763
Hin1II	CATG	5 cut(s)	155, 179, 361, 790, 831
Hin6I	GCGC	1 cut(s)	763
HinP1I	GCGC	1 cut(s)	763
HincII	GTYRAC	2 cut(s)	132, 895
HindII	GTYRAC	2 cut(s)	132, 895
HindIII	AAGCTT	3 cut(s)	274, 521, 840
HinfI	GANTC	8 cut(s)	224, 253, 362, 469, 569, 776, 811, 879
HpaII	CCGG	1 cut(s)	457
Hpy166II	GTNNAC	3 cut(s)	132, 622, 895
Hpy188I	TCNGA	6 cut(s)	64, 258, 607, 719, 781, 816
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	3 cut(s)	132, 622, 895
Hpy99I	CGWCG	2 cut(s)	136, 905
HpyAV	CCTTC	3 cut(s)	65, 380, 705
HpyCH4III	ACNGT	2 cut(s)	248, 626
HpyCH4IV	ACGT	2 cut(s)	485, 516
HpyCH4V	TGCA	7 cut(s)	108, 401, 492, 509, 546, 552, 786
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 172
HpyF3I	CTNAG	3 cut(s)	63, 716, 772
HpySE526I	ACGT	2 cut(s)	485, 516
Hsp92I	GRCGYC	2 cut(s)	15, 763
Hsp92II	CATG	5 cut(s)	155, 179, 361, 790, 831
HspAI	GCGC	1 cut(s)	763
KasI	GGCGCC	1 cut(s)	762
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	178, 291, 409, 818
LpnPI	CCDG	9 cut(s)	31, 81, 181, 223, 470, 525, 541, 592, 738
Lsp1109I	GCAGC	3 cut(s)	45, 120, 174
LweI	GCATC	3 cut(s)	45, 523, 533
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	2 cut(s)	485, 516
MaeIII	GTNAC	3 cut(s)	212, 466, 479
MalI	GATC	4 cut(s)	180, 293, 411, 820
MboI	GATC	4 cut(s)	178, 291, 409, 818
MboII	GAAGA	7 cut(s)	149, 292, 813, 844, 847, 874, 877
MfeI	CAATTG	1 cut(s)	547
MflI	RGATCY	1 cut(s)	818
MhlI	GDGCHC	1 cut(s)	728
MluCI	AATT	5 cut(s)	98, 123, 349, 547, 642
Mly113I	GGCGCC	1 cut(s)	763
MlyI	GAGTC	2 cut(s)	463, 888
MmeI	TCCRAC	1 cut(s)	109
MseI	TTAA	8 cut(s)	126, 236, 339, 348, 432, 474, 597, 641
MspI	CCGG	1 cut(s)	457
MunI	CAATTG	1 cut(s)	547
MvnI	CGCG	2 cut(s)	95, 860
MwoI	GCNNNNNNNGC	2 cut(s)	42, 172
NarI	GGCGCC	1 cut(s)	763
NcoI	CCATGG	1 cut(s)	357
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	4 cut(s)	178, 291, 409, 818
NlaIII	CATG	5 cut(s)	155, 179, 361, 790, 831
NlaIV	GGNNCC	1 cut(s)	764
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	212, 466
NspI	RCATGY	1 cut(s)	790
PfeI	GAWTC	6 cut(s)	224, 253, 362, 569, 776, 811
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	4 cut(s)	35, 110, 189, 836
PleI	GAGTC	2 cut(s)	463, 887
PluTI	GGCGCC	1 cut(s)	766
PpsI	GAGTC	2 cut(s)	463, 887
Ppu21I	YACGTR	1 cut(s)	486
PshBI	ATTAAT	1 cut(s)	641
PspFI	CCCAGC	2 cut(s)	45, 195
PspN4I	GGNNCC	1 cut(s)	764
PspPI	GGNCC	4 cut(s)	165, 261, 674, 692
PstI	CTGCAG	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	818
RsaI	GTAC	2 cut(s)	711, 733
RsaNI	GTAC	2 cut(s)	710, 732
SalI	GTCGAC	1 cut(s)	130
SaqAI	TTAA	8 cut(s)	126, 236, 339, 348, 432, 474, 597, 641
SatI	GCNGC	4 cut(s)	34, 109, 188, 835
Sau3AI	GATC	4 cut(s)	178, 291, 409, 818
Sau96I	GGNCC	4 cut(s)	165, 261, 674, 692
SchI	GAGTC	2 cut(s)	463, 888
SduI	GDGCHC	1 cut(s)	728
SfaNI	GCATC	3 cut(s)	45, 523, 533
SfcI	CTRYAG	1 cut(s)	106
SfoI	GGCGCC	1 cut(s)	764
SinI	GGWCC	1 cut(s)	692
SmlI	CTYRAG	2 cut(s)	169, 727
SmoI	CTYRAG	2 cut(s)	169, 727
Sse9I	AATT	5 cut(s)	98, 123, 349, 547, 642
SsiI	CCGC	3 cut(s)	95, 834, 868
SspDI	GGCGCC	1 cut(s)	762
SspMI	CTAG	1 cut(s)	228
StyI	CCWWGG	2 cut(s)	357, 651
TaaI	ACNGT	2 cut(s)	248, 626
TaiI	ACGT	2 cut(s)	488, 519
TaqI	TCGA	3 cut(s)	131, 412, 888
TasI	AATT	5 cut(s)	98, 123, 349, 547, 642
TauI	GCSGC	1 cut(s)	837
TfiI	GAWTC	6 cut(s)	224, 253, 362, 569, 776, 811
Tru1I	TTAA	8 cut(s)	126, 236, 339, 348, 432, 474, 597, 641
Tru9I	TTAA	8 cut(s)	126, 236, 339, 348, 432, 474, 597, 641
TscAI	CASTG	2 cut(s)	544, 773
TseFI	GTSAC	2 cut(s)	212, 466
TseI	GCWGC	3 cut(s)	33, 108, 187
Tsp45I	GTSAC	2 cut(s)	212, 466
TspDTI	ATGAA	3 cut(s)	17, 285, 354
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	544, 773
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	692
VspI	ATTAAT	1 cut(s)	641
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	790
XmiI	GTMKAC	1 cut(s)	131
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.