Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000580.1

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

169084 .. 170785

Gene Structure 1702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000580.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgcaggttaagctgaatccatctcttgcggatgcgtggctgtgcttaggtaactgcatttggaagaagggagatctgtcttcggccaagaactgctttactcttgcactaagcaaaggtccaaacaaacagatactatgccaactctcaatgctcgaaaggaaaatggcccaaggtgccgataatcaggcagaacttgttgatgaaagcataaaacatgccaaggaagctataactttggatgtcaaggatgggaattcatggtacaatcttggaaatgcatgtcttacaagtttttttgtgaccggagcctgggaccacgccaaacttctgcagtctctaaaggcataccaaaatgctgaaaaagatgaaaggatgaaatctaatccagacctgtactttaactgtgctactgtaaacaaatatctagaaaactatgaaatggcccttactggatttgaagctgctgctttaaaggatcctggtctcaatgctaccgaagaggttcaaaagattgttaaccttcttgacaagctagataatttgttaagggatcaagggacttgggctatcaggttggtgtgcgaggacataactgggggtctagaggatattgccattccagctagcaatttggtcgatgatccgcctgttgctttgccagttgatgttgtaaatatggttatcttagcaagcataaaggagttaaggcttaaagctgttggtgcattgttttcacttatttgtgaggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

251

Amino Acids

27.59

Weight (kDa)

4.9

Isoelectric Point (pI)

20.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AciI	CCGC	2 cut(s)	29, 647
AclWI	GGATC	4 cut(s)	473, 486, 561, 638
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	256
AfaI	GTAC	2 cut(s)	266, 398
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	2 cut(s)	461, 509
AjnI	CCWGG	2 cut(s)	311, 481
AluBI	AGCT	6 cut(s)	13, 230, 464, 535, 626, 719
AluI	AGCT	6 cut(s)	13, 230, 464, 535, 626, 719
Alw26I	GTCTC	2 cut(s)	342, 491
AlwI	GGATC	4 cut(s)	473, 486, 561, 638
AoxI	GGCC	3 cut(s)	84, 168, 444
ApeKI	GCWGC	2 cut(s)	464, 467
ApoI	RAATTY	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	504
AspS9I	GGNCC	4 cut(s)	119, 169, 316, 445
AsuNHI	GCTAGC	1 cut(s)	626
AvaII	GGWCC	2 cut(s)	119, 316
BamHI	GGATCC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	451, 454
BccI	CCATC	2 cut(s)	28, 245
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BciT130I	CCWGG	2 cut(s)	313, 483
BcoDI	GTCTC	2 cut(s)	342, 491
BfaI	CTAG	4 cut(s)	428, 536, 605, 627
BfmI	CTRYAG	1 cut(s)	332
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	2 cut(s)	465, 468
BlsI	GCNGC	2 cut(s)	466, 469
Bme1390I	CCNGG	2 cut(s)	313, 483
Bme18I	GGWCC	2 cut(s)	119, 316
BmgT120I	GGNCC	4 cut(s)	119, 169, 316, 445
BmiI	GGNNCC	4 cut(s)	178, 310, 317, 480
BmrFI	CCNGG	2 cut(s)	313, 483
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	1 cut(s)	22
BmtI	GCTAGC	1 cut(s)	630
BmuI	ACTGGG	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	172, 222, 312
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	3 cut(s)	457, 601, 662
BseBI	CCWGG	2 cut(s)	313, 483
BseDI	CCNNGG	3 cut(s)	172, 222, 312
BseGI	GGATG	4 cut(s)	37, 247, 256, 381
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseNI	ACTGG	3 cut(s)	457, 601, 662
BseXI	GCAGC	2 cut(s)	451, 454
BshFI	GGCC	3 cut(s)	86, 170, 446
BshNI	GGYRCC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	2 cut(s)	329, 574
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	342, 491
BsmFI	GGGAC	2 cut(s)	329, 574
BsnI	GGCC	3 cut(s)	86, 170, 446
Bso31I	GGTCTC	1 cut(s)	491
Bsp143I	GATC	4 cut(s)	73, 478, 553, 643
BspACI	CCGC	2 cut(s)	29, 647
BspANI	GGCC	3 cut(s)	86, 170, 446
BspLI	GGNNCC	4 cut(s)	178, 310, 317, 480
BspMAI	CTGCAG	1 cut(s)	336
BspOI	GCTAGC	1 cut(s)	630
BspPI	GGATC	4 cut(s)	473, 486, 561, 638
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	491
BsrI	ACTGG	3 cut(s)	457, 601, 662
BssECI	CCNNGG	3 cut(s)	172, 222, 312
BssMI	GATC	4 cut(s)	73, 478, 553, 643
BssT1I	CCWWGG	2 cut(s)	172, 222
Bst2UI	CCWGG	2 cut(s)	313, 483
Bst4CI	ACNGT	2 cut(s)	407, 415
Bst6I	CTCTTC	1 cut(s)	495
BstC8I	GCNNGC	2 cut(s)	628, 694
BstDEI	CTNAG	3 cut(s)	46, 110, 688
BstF5I	GGATG	4 cut(s)	37, 247, 256, 381
BstKTI	GATC	4 cut(s)	76, 481, 556, 646
BstMAI	GTCTC	2 cut(s)	342, 491
BstMBI	GATC	4 cut(s)	73, 478, 553, 643
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 176, 227, 623, 725
BstNI	CCWGG	2 cut(s)	313, 483
BstNSI	RCATGY	2 cut(s)	221, 285
BstSCI	CCNGG	2 cut(s)	311, 481
BstSFI	CTRYAG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	451, 454
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	73, 478
BstYI	RGATCY	2 cut(s)	73, 478
BsuRI	GGCC	3 cut(s)	86, 170, 446
BtsCI	GGATG	4 cut(s)	37, 247, 256, 381
Cac8I	GCNNGC	2 cut(s)	628, 694
Cfr13I	GGNCC	4 cut(s)	119, 169, 316, 445
Csp6I	GTAC	2 cut(s)	265, 397
CviAII	CATG	3 cut(s)	218, 261, 282
CviQI	GTAC	2 cut(s)	265, 397
DdeI	CTNAG	3 cut(s)	46, 110, 688
DpnI	GATC	4 cut(s)	75, 480, 555, 645
DpnII	GATC	4 cut(s)	73, 478, 553, 643
DraI	TTTAAA	1 cut(s)	474
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	1 cut(s)	636
Eco130I	CCWWGG	2 cut(s)	172, 222
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	2 cut(s)	119, 316
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	311, 481
EcoT14I	CCWWGG	2 cut(s)	172, 222
EcoT22I	ATGCAT	1 cut(s)	283
ErhI	CCWWGG	2 cut(s)	172, 222
FaeI	CATG	3 cut(s)	221, 264, 285
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	2 cut(s)	329, 574
FatI	CATG	3 cut(s)	217, 260, 281
Fnu4HI	GCNGC	2 cut(s)	465, 468
FokI	GGATG	4 cut(s)	44, 254, 263, 388
Fsp4HI	GCNGC	2 cut(s)	465, 468
FspBI	CTAG	4 cut(s)	428, 536, 605, 627
GluI	GCNGC	2 cut(s)	465, 468
HaeIII	GGCC	3 cut(s)	86, 170, 446
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	3 cut(s)	221, 264, 285
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	1 cut(s)	16
HpaI	GTTAAC	1 cut(s)	520
HpaII	CCGG	1 cut(s)	306
Hpy166II	GTNNAC	2 cut(s)	418, 520
Hpy188III	TCNNGA	4 cut(s)	389, 428, 527, 605
Hpy8I	GTNNAC	2 cut(s)	418, 520
HpyAV	CCTTC	2 cut(s)	61, 533
HpyCH4III	ACNGT	2 cut(s)	407, 415
HpyCH4V	TGCA	6 cut(s)	4, 57, 107, 281, 334, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 176, 227, 623, 725
HpyF3I	CTNAG	3 cut(s)	46, 110, 688
Hsp92II	CATG	3 cut(s)	221, 264, 285
KspAI	GTTAAC	1 cut(s)	520
Kzo9I	GATC	4 cut(s)	73, 478, 553, 643
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	2 cut(s)	451, 454
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	4 cut(s)	428, 536, 605, 627
MaeIII	GTNAC	2 cut(s)	50, 301
MalI	GATC	4 cut(s)	75, 480, 555, 645
MboI	GATC	4 cut(s)	73, 478, 553, 643
MboII	GAAGA	3 cut(s)	72, 76, 512
MflI	RGATCY	2 cut(s)	73, 478
MluCI	AATT	3 cut(s)	256, 541, 631
MnlI	CCTC	4 cut(s)	496, 580, 601, 742
Mph1103I	ATGCAT	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	7 cut(s)	9, 402, 473, 519, 548, 707, 714
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	2 cut(s)	313, 483
MvaI	CCWGG	2 cut(s)	313, 483
MwoI	GCNNNNNNNGC	5 cut(s)	10, 176, 227, 623, 725
NdeII	GATC	4 cut(s)	73, 478, 553, 643
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	3 cut(s)	221, 264, 285
NlaIV	GGNNCC	4 cut(s)	178, 310, 317, 480
NmuCI	GTSAC	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	2 cut(s)	221, 285
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	466, 469
Psp6I	CCWGG	2 cut(s)	311, 481
PspGI	CCWGG	2 cut(s)	311, 481
PspN4I	GGNNCC	4 cut(s)	178, 310, 317, 480
PspPI	GGNCC	4 cut(s)	119, 169, 316, 445
PstI	CTGCAG	1 cut(s)	336
PsuI	RGATCY	2 cut(s)	73, 478
RsaI	GTAC	2 cut(s)	266, 398
RsaNI	GTAC	2 cut(s)	265, 397
SaqAI	TTAA	7 cut(s)	9, 402, 473, 519, 548, 707, 714
SatI	GCNGC	2 cut(s)	465, 468
Sau3AI	GATC	4 cut(s)	73, 478, 553, 643
Sau96I	GGNCC	4 cut(s)	119, 169, 316, 445
ScrFI	CCNGG	2 cut(s)	313, 483
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	332
SinI	GGWCC	2 cut(s)	119, 316
Sse9I	AATT	3 cut(s)	256, 541, 631
SsiI	CCGC	2 cut(s)	29, 647
SspMI	CTAG	4 cut(s)	428, 536, 605, 627
StyD4I	CCNGG	2 cut(s)	311, 481
StyI	CCWWGG	2 cut(s)	172, 222
TaaI	ACNGT	2 cut(s)	407, 415
TaqI	TCGA	2 cut(s)	156, 639
TasI	AATT	3 cut(s)	256, 541, 631
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	7 cut(s)	9, 402, 473, 519, 548, 707, 714
Tru9I	TTAA	7 cut(s)	9, 402, 473, 519, 548, 707, 714
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	2 cut(s)	464, 467
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	5 cut(s)	219, 249, 384, 392, 453
VpaK11BI	GGWCC	2 cut(s)	119, 316
XapI	RAATTY	1 cut(s)	256
XbaI	TCTAGA	2 cut(s)	427, 604
XceI	RCATGY	2 cut(s)	221, 285
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	4 cut(s)	428, 536, 605, 627
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.