Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004245.1

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

25618 .. 28375

Gene Structure 2758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004245.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgaaagggtcaatacagaagcccaccgaactggttgaagatctctactcccgatgttacacgtattgcaagtctattcaaattgcgcaaaacgtgaagcttcccagagatgccactggatgcaattgcaaaggaagttgtgtagattccaagacctgccaatgtgccaaacttaacggctctgactttccatatgtgcaccgtgatggtggcaggacgttgaaaatggaggaagacagaccagatgatgcctgtgatgcttaccatacatattttggtgtagcagggccttccctccttgaatatcaaatggtgaaacccacaagtccagcttatgctttgccagttgatgttgtaaatatggttatcttagcaagcataatagagttaaggcttaaagctgctggtgcattgttttcacttatttgtgaggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

145

Amino Acids

15.94

Weight (kDa)

6.09

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	87
Acc36I	ACCTGC	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	4 cut(s)	38, 80, 223, 302
AluBI	AGCT	3 cut(s)	100, 332, 401
AluI	AGCT	3 cut(s)	100, 332, 401
Alw21I	GWGCWC	1 cut(s)	201
Alw44I	GTGCAC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	287
ApaLI	GTGCAC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	193
BfuAI	ACCTGC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	287
BmsI	GCATC	4 cut(s)	100, 110, 238, 247
BpiI	GAAGAC	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	63
Bse1I	ACTGG	3 cut(s)	36, 121, 344
BseGI	GGATG	1 cut(s)	125
BseNI	ACTGG	3 cut(s)	36, 121, 344
BseSI	GKGCMC	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	36, 121, 344
BssMI	GATC	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	1 cut(s)	370
BstF5I	GGATG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 407
BstSLI	GKGCMC	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	287
CviJI	RGCY	7 cut(s)	22, 100, 180, 289, 332, 394, 401
CviKI_1	RGCY	7 cut(s)	22, 100, 180, 289, 332, 394, 401
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	287
FaiI	YATR	7 cut(s)	193, 195, 267, 271, 336, 362, 380
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	402
FspI	TGCGCA	1 cut(s)	87
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	289
HhaI	GCGC	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	1 cut(s)	146
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	3 cut(s)	62, 93, 218
HpyCH4V	TGCA	5 cut(s)	69, 123, 129, 199, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 407
HpyF3I	CTNAG	1 cut(s)	370
HpySE526I	ACGT	3 cut(s)	62, 93, 218
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	40
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	4 cut(s)	100, 110, 238, 247
MaeII	ACGT	3 cut(s)	62, 93, 218
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	50, 245
MfeI	CAATTG	1 cut(s)	124
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	2 cut(s)	81, 124
MnlI	CCTC	3 cut(s)	223, 305, 424
MseI	TTAA	3 cut(s)	174, 389, 396
MslI	CAYNNNNRTG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	257, 407
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	1 cut(s)	40
NsbI	TGCGCA	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	403
Ppu21I	YACGTR	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	174, 389, 396
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	8 cut(s)	65, 96, 102, 158, 221, 334, 403, 435
SfaNI	GCATC	4 cut(s)	100, 110, 238, 247
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	81, 124
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	3 cut(s)	65, 96, 221
TasI	AATT	2 cut(s)	81, 124
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	3 cut(s)	174, 389, 396
Tru9I	TTAA	3 cut(s)	174, 389, 396
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	121
VneI	GTGCAC	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.