Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

5001986 .. 5022047

Gene Structure 20062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG028200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATGGAGAACAAGAGGATGATGGACAGTTCTATTAGAGAAATAGAGAGGACAATCCTTCTGAGGGCAAGAGAAGAAACTGGTTCAAGGTTAAGAAAACTGCTACGTAAGGGCAGATGGATCATCTTTTTTGTGACCGGAGCCTGGGACCACGCCAAACTTCTGCAGTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACCGAAGAGGTTCAAAAGATTGTTAACCTTCTTGACAAGCTAGATAATTTGTTAAGGGATCAAGGGGCCTTGGGCTATCATCTATTGGCAGAATGGAAAAAATTCAAGGCTGCGAAAAAGAAGGCCAGAACTACACCTTGCAAACCAGAGGTACCAACATCCAACTTAGATGTTGAAGTTGTAGAGACAGCAAACGCCTTGATGGGACTAGCTGACGATGAAATGAATGCTGAAGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

189

Amino Acids

21.57

Weight (kDa)

7.71

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	478
AccB1I	GGYRCC	1 cut(s)	478
AclWI	GGATC	4 cut(s)	128, 305, 318, 393
AcsI	RAATTY	1 cut(s)	428
AfaI	GTAC	2 cut(s)	230, 480
AfiI	CCNNNNNNNGG	2 cut(s)	64, 144
AgsI	TTSAA	5 cut(s)	87, 293, 341, 433, 503
AjnI	CCWGG	2 cut(s)	143, 313
AluBI	AGCT	3 cut(s)	296, 367, 539
AluI	AGCT	3 cut(s)	296, 367, 539
Alw26I	GTCTC	3 cut(s)	174, 323, 506
AlwI	GGATC	4 cut(s)	128, 305, 318, 393
AoxI	GGCC	3 cut(s)	276, 393, 450
ApeKI	GCWGC	3 cut(s)	296, 299, 437
ApoI	RAATTY	1 cut(s)	428
Asp700I	GAANNNNTTC	2 cut(s)	336, 428
Asp718I	GGTACC	1 cut(s)	478
AspS9I	GGNCC	3 cut(s)	148, 277, 393
AvaII	GGWCC	1 cut(s)	148
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	478
BbvI	GCAGC	3 cut(s)	283, 286, 424
BccI	CCATC	3 cut(s)	16, 111, 523
BciT130I	CCWGG	2 cut(s)	145, 315
BcoDI	GTCTC	3 cut(s)	174, 323, 506
BfaI	CTAG	3 cut(s)	260, 368, 536
BfmI	CTRYAG	1 cut(s)	164
BisI	GCNGC	3 cut(s)	297, 300, 438
BlsI	GCNGC	3 cut(s)	298, 301, 439
Bme1390I	CCNGG	2 cut(s)	145, 315
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	148, 277, 393
BmiI	GGNNCC	5 cut(s)	142, 149, 312, 394, 480
BmrFI	CCNGG	2 cut(s)	145, 315
BsaAI	YACGTR	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	144, 396
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 144
Bse1I	ACTGG	2 cut(s)	85, 289
BseBI	CCWGG	2 cut(s)	145, 315
BseDI	CCNNGG	2 cut(s)	144, 396
BseGI	GGATG	3 cut(s)	24, 213, 485
BseLI	CCNNNNNNNGG	2 cut(s)	64, 144
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	2 cut(s)	85, 289
BseXI	GCAGC	3 cut(s)	283, 286, 424
BshFI	GGCC	3 cut(s)	278, 395, 452
BshNI	GGYRCC	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	2 cut(s)	161, 546
BslI	CCNNNNNNNGG	2 cut(s)	64, 144
BsmAI	GTCTC	3 cut(s)	174, 323, 506
BsmFI	GGGAC	2 cut(s)	161, 546
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	3 cut(s)	278, 395, 452
Bso31I	GGTCTC	1 cut(s)	323
Bsp143I	GATC	3 cut(s)	120, 310, 385
BspANI	GGCC	3 cut(s)	278, 395, 452
BspCNI	CTCAG	1 cut(s)	54
BspLI	GGNNCC	5 cut(s)	142, 149, 312, 394, 480
BspMAI	CTGCAG	1 cut(s)	168
BspPI	GGATC	4 cut(s)	128, 305, 318, 393
BspT107I	GGYRCC	1 cut(s)	478
BspTNI	GGTCTC	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	85, 289
BssECI	CCNNGG	2 cut(s)	144, 396
BssMI	GATC	3 cut(s)	120, 310, 385
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	2 cut(s)	145, 315
Bst4CI	ACNGT	3 cut(s)	29, 239, 247
Bst6I	CTCTTC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	62, 493
BstF5I	GGATG	3 cut(s)	24, 213, 485
BstKTI	GATC	3 cut(s)	123, 313, 388
BstMAI	GTCTC	3 cut(s)	174, 323, 506
BstMBI	GATC	3 cut(s)	120, 310, 385
BstNI	CCWGG	2 cut(s)	145, 315
BstSCI	CCNGG	2 cut(s)	143, 313
BstSFI	CTRYAG	1 cut(s)	164
BstSNI	TACGTA	1 cut(s)	107
BstV1I	GCAGC	3 cut(s)	283, 286, 424
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	278, 395, 452
BtsCI	GGATG	3 cut(s)	24, 213, 485
Cfr13I	GGNCC	3 cut(s)	148, 277, 393
Csp6I	GTAC	2 cut(s)	229, 479
CviQI	GTAC	2 cut(s)	229, 479
DdeI	CTNAG	2 cut(s)	62, 493
DpnI	GATC	3 cut(s)	122, 312, 387
DpnII	GATC	3 cut(s)	120, 310, 385
DraI	TTTAAA	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco105I	TACGTA	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	396
Eco31I	GGTCTC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	393
EcoRII	CCWGG	2 cut(s)	143, 313
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FaiI	YATR	2 cut(s)	181, 270
FaqI	GGGAC	2 cut(s)	161, 546
Fnu4HI	GCNGC	3 cut(s)	297, 300, 438
FokI	GGATG	3 cut(s)	31, 220, 472
Fsp4HI	GCNGC	3 cut(s)	297, 300, 438
FspBI	CTAG	3 cut(s)	260, 368, 536
GluI	GCNGC	3 cut(s)	297, 300, 438
HaeIII	GGCC	3 cut(s)	278, 395, 452
HapII	CCGG	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HpaI	GTTAAC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	2 cut(s)	250, 352
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	3 cut(s)	221, 260, 359
Hpy8I	GTNNAC	2 cut(s)	250, 352
HpyAV	CCTTC	4 cut(s)	68, 365, 442, 554
HpyCH4III	ACNGT	3 cut(s)	29, 239, 247
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	166, 468
HpyF3I	CTNAG	2 cut(s)	62, 493
HpySE526I	ACGT	1 cut(s)	106
KpnI	GGTACC	1 cut(s)	482
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	120, 310, 385
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	3 cut(s)	283, 286, 424
MaeI	CTAG	3 cut(s)	260, 368, 536
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	122, 312, 387
MboI	GATC	3 cut(s)	120, 310, 385
MboII	GAAGA	2 cut(s)	86, 344
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	2 cut(s)	373, 428
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	5 cut(s)	9, 42, 57, 328, 469
MroXI	GAANNNNTTC	2 cut(s)	336, 428
MseI	TTAA	5 cut(s)	92, 234, 305, 351, 380
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	145, 315
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	2 cut(s)	145, 315
NdeII	GATC	3 cut(s)	120, 310, 385
NlaIV	GGNNCC	5 cut(s)	142, 149, 312, 394, 480
NmuCI	GTSAC	1 cut(s)	133
PctI	GAATGC	1 cut(s)	559
PdmI	GAANNNNTTC	2 cut(s)	336, 428
PkrI	GCNGC	3 cut(s)	298, 301, 439
Ppu21I	YACGTR	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	143, 313
PspGI	CCWGG	2 cut(s)	143, 313
PspN4I	GGNNCC	5 cut(s)	142, 149, 312, 394, 480
PspPI	GGNCC	3 cut(s)	148, 277, 393
PstI	CTGCAG	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	2 cut(s)	230, 480
RsaNI	GTAC	2 cut(s)	229, 479
SaqAI	TTAA	5 cut(s)	92, 234, 305, 351, 380
SatI	GCNGC	3 cut(s)	297, 300, 438
Sau3AI	GATC	3 cut(s)	120, 310, 385
Sau96I	GGNCC	3 cut(s)	148, 277, 393
ScrFI	CCNGG	2 cut(s)	145, 315
SfcI	CTRYAG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	148
SnaBI	TACGTA	1 cut(s)	107
Sse9I	AATT	2 cut(s)	373, 428
SspMI	CTAG	3 cut(s)	260, 368, 536
StyD4I	CCNGG	2 cut(s)	143, 313
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	3 cut(s)	29, 239, 247
TaiI	ACGT	1 cut(s)	109
TasI	AATT	2 cut(s)	373, 428
TatI	WGTACW	1 cut(s)	228
Tru1I	TTAA	5 cut(s)	92, 234, 305, 351, 380
Tru9I	TTAA	5 cut(s)	92, 234, 305, 351, 380
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	3 cut(s)	296, 299, 437
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	5 cut(s)	216, 224, 285, 561, 566
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	1 cut(s)	428
XbaI	TCTAGA	1 cut(s)	259
XmnI	GAANNNNTTC	2 cut(s)	336, 428
XspI	CTAG	3 cut(s)	260, 368, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.