Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

8110534 .. 8118800

Gene Structure 8267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG077100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGGATCCAGTATCCACCTTAGATCATTGTTTGCGAATTCAACGATGTTCCAGGAGCTCCAGGGAGAAGCCTTTTCTGTATGAAATTGTGGCAAATGGGCGTAATGGTTTGATTATCTTGTCCGTGACAGCCGAGATTGTGGACTGGGATGCAACTTTGAGTTTAAAAGATTCTATCCCTTTCCCCGAAAGGGCCATGTCATTGGCATTTGATATCCTCAATGACCTTGTGGAGGTGTGGGATGCAACTGCAGCTGATCCTAAATTGCTGGTCTTTTTGAAATCGTACAGGAATTTCTTACACACTGAATCTGGAATTAAAGCAGTATCCCAATTTAAGAGTGGAAGTTGGGAATGCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

122

Amino Acids

13.73

Weight (kDa)

5.63

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	2, 15, 254
AcsI	RAATTY	2 cut(s)	39, 295
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	193, 235
AgsI	TTSAA	2 cut(s)	44, 283
AjnI	CCWGG	2 cut(s)	53, 62
AluBI	AGCT	2 cut(s)	60, 257
AluI	AGCT	2 cut(s)	60, 257
Alw21I	GWGCWC	1 cut(s)	62
AlwI	GGATC	3 cut(s)	2, 15, 254
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	39, 295
AspS9I	GGNCC	1 cut(s)	195
BamHI	GGATCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	266
BciT130I	CCWGG	2 cut(s)	55, 64
BciVI	GTATCC	2 cut(s)	25, 340
BfmI	CTRYAG	1 cut(s)	252
BfuI	GTATCC	2 cut(s)	25, 340
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	2 cut(s)	55, 64
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	55, 64
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	142, 235
BmuI	ACTGGG	1 cut(s)	157
BpmI	CTGGAG	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 235
Bse1I	ACTGG	2 cut(s)	11, 152
BseBI	CCWGG	2 cut(s)	55, 64
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	157, 250
BseLI	CCNNNNNNNGG	2 cut(s)	193, 235
BseNI	ACTGG	2 cut(s)	11, 152
BseXI	GCAGC	1 cut(s)	266
BshFI	GGCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	193, 235
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	3 cut(s)	7, 25, 259
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	3 cut(s)	2, 15, 254
BsrI	ACTGG	2 cut(s)	11, 152
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	7, 25, 259
Bst2UI	CCWGG	2 cut(s)	55, 64
BstDEI	CTNAG	1 cut(s)	22
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	157, 250
BstKTI	GATC	3 cut(s)	10, 28, 262
BstMBI	GATC	3 cut(s)	7, 25, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	55, 64
BstSCI	CCNGG	2 cut(s)	53, 62
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	7
BsuI	GTATCC	2 cut(s)	25, 340
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	157, 250
BtsIMutI	CAGTG	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	5 cut(s)	60, 73, 134, 197, 257
CviKI_1	RGCY	5 cut(s)	60, 73, 134, 197, 257
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	3 cut(s)	9, 27, 261
DpnII	GATC	3 cut(s)	7, 25, 259
DraI	TTTAAA	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	62
Eco32I	GATATC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	53, 62
EcoRV	GATATC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	62
FaeI	CATG	1 cut(s)	202
FaiI	YATR	2 cut(s)	84, 200
FatI	CATG	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	2 cut(s)	164, 257
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	202
HinfI	GANTC	2 cut(s)	173, 311
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	155, 248, 254, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	7, 25, 259
LmnI	GCTCC	2 cut(s)	57, 65
LpnPI	CCDG	9 cut(s)	24, 40, 49, 67, 76, 133, 257, 277, 300
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	2 cut(s)	142, 235
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	9, 27, 261
MboI	GATC	3 cut(s)	7, 25, 259
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	6 cut(s)	39, 87, 266, 295, 318, 335
MnlI	CCTC	2 cut(s)	229, 230
MseI	TTAA	3 cut(s)	167, 321, 339
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	55, 64
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	2 cut(s)	55, 64
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	3 cut(s)	7, 25, 259
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	127
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	173, 311
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	53, 62
PspGI	CCWGG	2 cut(s)	53, 62
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	195
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	167, 321, 339
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	3 cut(s)	7, 25, 259
Sau96I	GGNCC	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	55, 64
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	5 cut(s)	23, 62, 231, 240, 259
SfaNI	GCATC	2 cut(s)	142, 235
SfcI	CTRYAG	1 cut(s)	252
Sse9I	AATT	6 cut(s)	39, 87, 266, 295, 318, 335
SsiI	CCGC	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	53, 62
TasI	AATT	6 cut(s)	39, 87, 266, 295, 318, 335
TfiI	GAWTC	2 cut(s)	173, 311
Tru1I	TTAA	3 cut(s)	167, 321, 339
Tru9I	TTAA	3 cut(s)	167, 321, 339
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	313
XagI	CCTNNNNNAGG	1 cut(s)	233
XapI	RAATTY	2 cut(s)	39, 295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.