histone-lysine N-methyltransferase, H3 lysine-9 specific
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1006, 1058 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 554 |
| AccII | CGCG | 1 cut(s) | 415 |
| AciI | CCGC | 4 cut(s) | 83, 376, 415, 1134 |
| AcsI | RAATTY | 3 cut(s) | 529, 666, 1346 |
| AcuI | CTGAAG | 2 cut(s) | 542, 749 |
| AfaI | GTAC | 6 cut(s) | 752, 909, 922, 996, 1268, 1340 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 336, 369, 554 |
| AflII | CTTAAG | 1 cut(s) | 46 |
| AflIII | ACRYGT | 1 cut(s) | 615 |
| AjiI | CACGTC | 1 cut(s) | 618 |
| AluBI | AGCT | 7 cut(s) | 34, 51, 881, 900, 961, 1218, 1250 |
| AluI | AGCT | 7 cut(s) | 34, 51, 881, 900, 961, 1218, 1250 |
| Alw26I | GTCTC | 4 cut(s) | 73, 575, 969, 1035 |
| Ama87I | CYCGRG | 2 cut(s) | 331, 680 |
| AoxI | GGCC | 1 cut(s) | 144 |
| ApoI | RAATTY | 3 cut(s) | 529, 666, 1346 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 307, 339 |
| AseI | ATTAAT | 2 cut(s) | 24, 792 |
| AspLEI | GCGC | 1 cut(s) | 254 |
| AspS9I | GGNCC | 4 cut(s) | 144, 315, 577, 674 |
| AsuHPI | GGTGA | 1 cut(s) | 842 |
| AsuII | TTCGAA | 1 cut(s) | 1359 |
| AvaI | CYCGRG | 2 cut(s) | 331, 680 |
| AvaII | GGWCC | 3 cut(s) | 315, 577, 674 |
| BauI | CACGAG | 1 cut(s) | 70 |
| BbsI | GAAGAC | 1 cut(s) | 1304 |
| BccI | CCATC | 2 cut(s) | 257, 950 |
| BceAI | ACGGC | 1 cut(s) | 95 |
| BclI | TGATCA | 2 cut(s) | 174, 397 |
| BcoDI | GTCTC | 4 cut(s) | 73, 575, 969, 1035 |
| BfaI | CTAG | 5 cut(s) | 506, 590, 897, 1094, 1399 |
| BfrI | CTTAAG | 1 cut(s) | 46 |
| BfuAI | ACCTGC | 2 cut(s) | 1006, 1058 |
| Bme18I | GGWCC | 3 cut(s) | 315, 577, 674 |
| BmeT110I | CYCGRG | 2 cut(s) | 331, 680 |
| BmgBI | CACGTC | 1 cut(s) | 618 |
| BmgT120I | GGNCC | 4 cut(s) | 144, 315, 577, 674 |
| BmiI | GGNNCC | 2 cut(s) | 374, 1042 |
| BpiI | GAAGAC | 1 cut(s) | 1304 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 131, 163, 1234, 1266 |
| BpmI | CTGGAG | 1 cut(s) | 438 |
| Bpu14I | TTCGAA | 1 cut(s) | 1359 |
| BpuEI | CTTGAG | 3 cut(s) | 557, 674, 1181 |
| BsaJI | CCNNGG | 2 cut(s) | 204, 332 |
| BsaWI | WCCGGW | 1 cut(s) | 1162 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 142, 172, 1322, 1352 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 336, 369, 554 |
| Bse3DI | GCAATG | 2 cut(s) | 385, 1129 |
| BseDI | CCNNGG | 2 cut(s) | 204, 332 |
| BseGI | GGATG | 2 cut(s) | 200, 1240 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 336, 369, 554 |
| BseMI | GCAATG | 2 cut(s) | 385, 1129 |
| BseMII | CTCAG | 1 cut(s) | 1265 |
| BseRI | GAGGAG | 6 cut(s) | 83, 86, 89, 92, 147, 1343 |
| BsgI | GTGCAG | 2 cut(s) | 94, 702 |
| Bsh1236I | CGCG | 1 cut(s) | 415 |
| BshFI | GGCC | 1 cut(s) | 146 |
| BsiHKCI | CYCGRG | 2 cut(s) | 331, 680 |
| BsiSI | CCGG | 1 cut(s) | 1163 |
| BslFI | GGGAC | 2 cut(s) | 313, 853 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 336, 369, 554 |
| BsmAI | GTCTC | 4 cut(s) | 73, 575, 969, 1035 |
| BsmFI | GGGAC | 2 cut(s) | 313, 853 |
| BsmI | GAATGC | 1 cut(s) | 865 |
| BsnI | GGCC | 1 cut(s) | 146 |
| BsoBI | CYCGRG | 2 cut(s) | 331, 680 |
| Bsp119I | TTCGAA | 1 cut(s) | 1359 |
| Bsp1407I | TGTACA | 2 cut(s) | 907, 1338 |
| Bsp143I | GATC | 4 cut(s) | 174, 397, 433, 1082 |
| BspACI | CCGC | 4 cut(s) | 83, 376, 415, 1134 |
| BspANI | GGCC | 1 cut(s) | 146 |
| BspCNI | CTCAG | 1 cut(s) | 1264 |
| BspFNI | CGCG | 1 cut(s) | 415 |
| BspHI | TCATGA | 2 cut(s) | 408, 769 |
| BspLI | GGNNCC | 2 cut(s) | 374, 1042 |
| BspMI | ACCTGC | 2 cut(s) | 1006, 1058 |
| BspT104I | TTCGAA | 1 cut(s) | 1359 |
| BspTI | CTTAAG | 1 cut(s) | 46 |
| BsrDI | GCAATG | 2 cut(s) | 385, 1129 |
| BsrGI | TGTACA | 2 cut(s) | 907, 1338 |
| BssECI | CCNNGG | 2 cut(s) | 204, 332 |
| BssMI | GATC | 4 cut(s) | 174, 397, 433, 1082 |
| BssSI | CACGAG | 1 cut(s) | 70 |
| Bst2BI | CACGAG | 1 cut(s) | 70 |
| Bst4CI | ACNGT | 8 cut(s) | 186, 322, 742, 920, 1029, 1271, 1294, 1338 |
| Bst6I | CTCTTC | 3 cut(s) | 132, 725, 1320 |
| BstAFI | CTTAAG | 1 cut(s) | 46 |
| BstAUI | TGTACA | 2 cut(s) | 907, 1338 |
| BstBI | TTCGAA | 1 cut(s) | 1359 |
| BstC8I | GCNNGC | 1 cut(s) | 1055 |
| BstDEI | CTNAG | 1 cut(s) | 1251 |
| BstF5I | GGATG | 2 cut(s) | 200, 1240 |
| BstFNI | CGCG | 1 cut(s) | 415 |
| BstHHI | GCGC | 1 cut(s) | 254 |
| BstKTI | GATC | 4 cut(s) | 177, 400, 436, 1085 |
| BstMAI | GTCTC | 4 cut(s) | 73, 575, 969, 1035 |
| BstMBI | GATC | 4 cut(s) | 174, 397, 433, 1082 |
| BstUI | CGCG | 1 cut(s) | 415 |
| BstV2I | GAAGAC | 1 cut(s) | 1304 |
| BsuRI | GGCC | 1 cut(s) | 146 |
| BtrI | CACGTC | 1 cut(s) | 618 |
| BtsCI | GGATG | 2 cut(s) | 200, 1240 |
| BtsIMutI | CAGTG | 4 cut(s) | 747, 846, 1276, 1334 |
| BveI | ACCTGC | 2 cut(s) | 1006, 1058 |
| Cac8I | GCNNGC | 1 cut(s) | 1055 |
| CciI | TCATGA | 2 cut(s) | 408, 769 |
| CfoI | GCGC | 1 cut(s) | 254 |
| Cfr13I | GGNCC | 4 cut(s) | 144, 315, 577, 674 |
| CseI | GACGC | 1 cut(s) | 421 |
| Csp6I | GTAC | 6 cut(s) | 751, 908, 921, 995, 1267, 1339 |
| CviAII | CATG | 4 cut(s) | 401, 409, 770, 1145 |
| CviQI | GTAC | 6 cut(s) | 751, 908, 921, 995, 1267, 1339 |
| DdeI | CTNAG | 1 cut(s) | 1251 |
| DpnI | GATC | 4 cut(s) | 176, 399, 435, 1084 |
| DpnII | GATC | 4 cut(s) | 174, 397, 433, 1082 |
| Eam1104I | CTCTTC | 3 cut(s) | 132, 725, 1320 |
| EarI | CTCTTC | 3 cut(s) | 132, 725, 1320 |
| Eco32I | GATATC | 1 cut(s) | 1061 |
| Eco47I | GGWCC | 3 cut(s) | 315, 577, 674 |
| Eco57I | CTGAAG | 2 cut(s) | 542, 749 |
| Eco88I | CYCGRG | 2 cut(s) | 331, 680 |
| EcoO109I | RGGNCCY | 2 cut(s) | 144, 577 |
| EcoRV | GATATC | 1 cut(s) | 1061 |
| FaeI | CATG | 4 cut(s) | 404, 412, 773, 1148 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 857, 889 |
| FaqI | GGGAC | 2 cut(s) | 313, 853 |
| FatI | CATG | 4 cut(s) | 400, 408, 769, 1144 |
| FbaI | TGATCA | 2 cut(s) | 174, 397 |
| FokI | GGATG | 2 cut(s) | 187, 1247 |
| FspBI | CTAG | 5 cut(s) | 506, 590, 897, 1094, 1399 |
| GlaI | GCGC | 1 cut(s) | 253 |
| GsuI | CTGGAG | 1 cut(s) | 438 |
| HaeIII | GGCC | 1 cut(s) | 146 |
| HapII | CCGG | 1 cut(s) | 1163 |
| HgaI | GACGC | 1 cut(s) | 421 |
| HhaI | GCGC | 1 cut(s) | 254 |
| Hin1II | CATG | 4 cut(s) | 404, 412, 773, 1148 |
| Hin6I | GCGC | 1 cut(s) | 252 |
| HinP1I | GCGC | 1 cut(s) | 252 |
| HincII | GTYRAC | 1 cut(s) | 445 |
| HindII | GTYRAC | 1 cut(s) | 445 |
| HindIII | AAGCTT | 2 cut(s) | 49, 1216 |
| HinfI | GANTC | 7 cut(s) | 55, 66, 223, 711, 833, 1090, 1137 |
| HpaII | CCGG | 1 cut(s) | 1163 |
| HphI | GGTGA | 1 cut(s) | 842 |
| Hpy166II | GTNNAC | 4 cut(s) | 14, 445, 908, 995 |
| Hpy188I | TCNGA | 5 cut(s) | 136, 364, 626, 710, 1014 |
| Hpy8I | GTNNAC | 4 cut(s) | 14, 445, 908, 995 |
| HpyAV | CCTTC | 2 cut(s) | 171, 617 |
| HpyCH4III | ACNGT | 8 cut(s) | 186, 322, 742, 920, 1029, 1271, 1294, 1338 |
| HpyCH4IV | ACGT | 2 cut(s) | 585, 617 |
| HpyCH4V | TGCA | 5 cut(s) | 75, 383, 719, 863, 971 |
| HpyF3I | CTNAG | 1 cut(s) | 1251 |
| HpySE526I | ACGT | 2 cut(s) | 585, 617 |
| Hsp92II | CATG | 4 cut(s) | 404, 412, 773, 1148 |
| HspAI | GCGC | 1 cut(s) | 252 |
| Ksp22I | TGATCA | 2 cut(s) | 174, 397 |
| Kzo9I | GATC | 4 cut(s) | 174, 397, 433, 1082 |
| LmnI | GCTCC | 1 cut(s) | 802 |
| MaeI | CTAG | 5 cut(s) | 506, 590, 897, 1094, 1399 |
| MaeII | ACGT | 2 cut(s) | 585, 617 |
| MaeIII | GTNAC | 1 cut(s) | 1188 |
| MalI | GATC | 4 cut(s) | 176, 399, 435, 1084 |
| MboI | GATC | 4 cut(s) | 174, 397, 433, 1082 |
| MboII | GAAGA | 4 cut(s) | 149, 742, 1304, 1337 |
| MlyI | GAGTC | 3 cut(s) | 49, 75, 232 |
| MmeI | TCCRAC | 1 cut(s) | 387 |
| MspA1I | CMGCKG | 2 cut(s) | 34, 961 |
| MspCI | CTTAAG | 1 cut(s) | 46 |
| MspI | CCGG | 1 cut(s) | 1163 |
| Mva1269I | GAATGC | 1 cut(s) | 865 |
| MvnI | CGCG | 1 cut(s) | 415 |
| NdeII | GATC | 4 cut(s) | 174, 397, 433, 1082 |
| NlaIII | CATG | 4 cut(s) | 404, 412, 773, 1148 |
| NlaIV | GGNNCC | 2 cut(s) | 374, 1042 |
| NmuCI | GTSAC | 1 cut(s) | 1188 |
| NspV | TTCGAA | 1 cut(s) | 1359 |
| PagI | TCATGA | 2 cut(s) | 408, 769 |
| PctI | GAATGC | 1 cut(s) | 865 |
| PfeI | GAWTC | 4 cut(s) | 711, 833, 1090, 1137 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 554 |
| PleI | GAGTC | 3 cut(s) | 49, 74, 231 |
| PpsI | GAGTC | 3 cut(s) | 49, 74, 231 |
| PpuMI | RGGWCCY | 1 cut(s) | 577 |
| PshBI | ATTAAT | 2 cut(s) | 24, 792 |
| Psp5II | RGGWCCY | 1 cut(s) | 577 |
| PspN4I | GGNNCC | 2 cut(s) | 374, 1042 |
| PspPI | GGNCC | 4 cut(s) | 144, 315, 577, 674 |
| PspPPI | RGGWCCY | 1 cut(s) | 577 |
| PvuII | CAGCTG | 2 cut(s) | 34, 961 |
| RsaI | GTAC | 6 cut(s) | 752, 909, 922, 996, 1268, 1340 |
| RsaNI | GTAC | 6 cut(s) | 751, 908, 921, 995, 1267, 1339 |
| Sau3AI | GATC | 4 cut(s) | 174, 397, 433, 1082 |
| Sau96I | GGNCC | 4 cut(s) | 144, 315, 577, 674 |
| SchI | GAGTC | 3 cut(s) | 49, 75, 232 |
| SfuI | TTCGAA | 1 cut(s) | 1359 |
| SinI | GGWCC | 3 cut(s) | 315, 577, 674 |
| SmlI | CTYRAG | 4 cut(s) | 46, 572, 653, 1196 |
| SmoI | CTYRAG | 4 cut(s) | 46, 572, 653, 1196 |
| SsiI | CCGC | 4 cut(s) | 83, 376, 415, 1134 |
| SspI | AATATT | 1 cut(s) | 761 |
| SspMI | CTAG | 5 cut(s) | 506, 590, 897, 1094, 1399 |
| TaaI | ACNGT | 8 cut(s) | 186, 322, 742, 920, 1029, 1271, 1294, 1338 |
| TaiI | ACGT | 2 cut(s) | 588, 620 |
| TaqI | TCGA | 3 cut(s) | 226, 1140, 1359 |
| TatI | WGTACW | 5 cut(s) | 750, 907, 920, 1266, 1338 |
| TfiI | GAWTC | 4 cut(s) | 711, 833, 1090, 1137 |
| TscAI | CASTG | 4 cut(s) | 747, 846, 1276, 1341 |
| TseFI | GTSAC | 1 cut(s) | 1188 |
| Tsp45I | GTSAC | 1 cut(s) | 1188 |
| TspDTI | ATGAA | 6 cut(s) | 107, 379, 397, 599, 837, 872 |
| TspGWI | ACGGA | 1 cut(s) | 1102 |
| TspRI | CASTG | 4 cut(s) | 747, 846, 1276, 1341 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 554 |
| Vha464I | CTTAAG | 1 cut(s) | 46 |
| VpaK11BI | GGWCC | 3 cut(s) | 315, 577, 674 |
| VspI | ATTAAT | 2 cut(s) | 24, 792 |
| XapI | RAATTY | 3 cut(s) | 529, 666, 1346 |
| XbaI | TCTAGA | 1 cut(s) | 1093 |
| XspI | CTAG | 5 cut(s) | 506, 590, 897, 1094, 1399 |