Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Reverse (-)

48930367 .. 48936953

Gene Structure 6587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG337400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAACGTCAATGCTTTCTCAAAGGGCAATAACAGGAGCTGTATTCCAAAAGATGAGCAGACAGTGAGATTGGATTCTGTTGATGGTCGTCTCCTCCTCAAAGAAGCTGAACAAGTTGATGGCGAGGGATGTTGGTTTCAGGACCCTGGCGTTCTCGATCTGGATAAGGTAAAGGTTGTAATTCATCCCTTTCAGCTTTTGATGTGGCCTCCTAGTCCCCGACGCATGCGTAAGCCATTCTCAAAATTCAAAGGTGAGAGCCTAATTCCCCTAACACCAAAACCCCAATTCGAATTGGGCACTGAGGATCCAAACCTCAATTTCAATTCTACAAGAGCTCCAGGGAGAAGCCTTTTCTGTATGAAATTGTGGCAAATGGGCGTAATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.82

Weight (kDa)

8.88

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	302, 315
AcsI	RAATTY	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	250, 325
AjnI	CCWGG	2 cut(s)	145, 340
AluBI	AGCT	4 cut(s)	39, 107, 196, 338
AluI	AGCT	4 cut(s)	39, 107, 196, 338
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	2 cut(s)	302, 315
AlwNI	CAGNNNCTG	1 cut(s)	39
AoxI	GGCC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	340
BccI	CCATC	2 cut(s)	77, 113
BciT130I	CCWGG	2 cut(s)	147, 342
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	213
Bme1390I	CCNGG	2 cut(s)	147, 342
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	144, 309
BmrFI	CCNGG	2 cut(s)	147, 342
BpmI	CTGGAG	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	145, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
BseBI	CCWGG	2 cut(s)	147, 342
BseDI	CCNNGG	2 cut(s)	145, 341
BseGI	GGATG	2 cut(s)	134, 184
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	2 cut(s)	83, 86
BseSI	GKGCMC	1 cut(s)	302
BshFI	GGCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	340
BslFI	GGGAC	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	95
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	208
Bsp119I	TTCGAA	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	302, 340
Bsp143I	GATC	2 cut(s)	157, 307
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	144, 309
BspPI	GGATC	2 cut(s)	302, 315
BspT104I	TTCGAA	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	145, 341
BssMI	GATC	2 cut(s)	157, 307
Bst2UI	CCWGG	2 cut(s)	147, 342
Bst4CI	ACNGT	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	134, 184
BstKTI	GATC	2 cut(s)	160, 310
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	157, 307
BstNI	CCWGG	2 cut(s)	147, 342
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	145, 340
BstSLI	GKGCMC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	134, 184
BtsIMutI	CAGTG	2 cut(s)	69, 300
Cac8I	GCNNGC	1 cut(s)	227
CaiI	CAGNNNCTG	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	142
CseI	GACGC	1 cut(s)	231
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	8 cut(s)	39, 107, 196, 208, 235, 261, 338, 351
CviKI_1	RGCY	8 cut(s)	39, 107, 196, 208, 235, 261, 338, 351
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	159, 309
DpnII	GATC	2 cut(s)	157, 307
Ecl136II	GAGCTC	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	145, 340
EcoT38I	GRGCYC	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	1 cut(s)	229
FaiI	YATR	2 cut(s)	227, 362
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	1 cut(s)	225
FokI	GGATG	2 cut(s)	141, 171
FriOI	GRGCYC	1 cut(s)	340
FspBI	CTAG	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	208
HgaI	GACGC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	229
HinfI	GANTC	1 cut(s)	74
HphI	GGTGA	1 cut(s)	266
Hpy188III	TCNNGA	3 cut(s)	140, 155, 161
Hpy99I	CGWCG	1 cut(s)	225
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	6
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	157, 307
LmnI	GCTCC	2 cut(s)	36, 343
LpnPI	CCDG	7 cut(s)	19, 125, 132, 146, 159, 327, 354
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	6
MalI	GATC	2 cut(s)	159, 309
MboI	GATC	2 cut(s)	157, 307
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	302, 340
MluCI	AATT	8 cut(s)	180, 245, 264, 287, 293, 319, 325, 365
MnlI	CCTC	6 cut(s)	104, 107, 118, 219, 298, 326
MspR9I	CCNGG	2 cut(s)	147, 342
MvaI	CCWGG	2 cut(s)	147, 342
NdeII	GATC	2 cut(s)	157, 307
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	2 cut(s)	144, 309
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	291
PaeI	GCATGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	145, 340
PspGI	CCWGG	2 cut(s)	145, 340
PspN4I	GGNNCC	2 cut(s)	144, 309
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	340
Sau3AI	GATC	2 cut(s)	157, 307
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	147, 342
SduI	GDGCHC	2 cut(s)	302, 340
SetI	ASST	9 cut(s)	9, 41, 109, 171, 177, 198, 256, 318, 340
SfuI	TTCGAA	1 cut(s)	291
SinI	GGWCC	1 cut(s)	142
SphI	GCATGC	1 cut(s)	229
Sse9I	AATT	8 cut(s)	180, 245, 264, 287, 293, 319, 325, 365
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	2 cut(s)	145, 340
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	156, 291
TasI	AATT	8 cut(s)	180, 245, 264, 287, 293, 319, 325, 365
TfiI	GAWTC	1 cut(s)	74
TscAI	CASTG	2 cut(s)	69, 307
TspDTI	ATGAA	3 cut(s)	17, 173, 377
TspRI	CASTG	2 cut(s)	69, 307
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.