Rh1CG238700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000927
Physical Location & Seq
Forward (+)
49713248 .. 49717920
4673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG238700.1

Sequence Viewer

Length: 411 bp
ATGACCAGACAGCGAGATTGGATTTTGTTGATGGTCGTCTCCTCCTCAAAGAAGCTGGATTTTGTTGATGGTCGTCTCCTCCTCAAAGAAGCTGAACGCATTGATGGCGATGTCATTAGTAAAGGTTGTAATTTATCCCTCTCAGCTTTTGATTCTGTCGTGGCCTCCGATGCATGCGTAAGCCATTCCCAAAATTCAAAGGTGAAAGCCCAATTCCCCAAACACCAAAACCCAAATTCGAATTGGGCACTGAGGATTCAAACCTCAATTTCAATTCTACAAGTGACTTTGGAGGTTAGTAGGTTGGAATCTGTGGCAGCTGTCTCTGGTATATTTGCGCATGAGTTTGTAGTCTACGCAAGAGCCTGCAGATGGTTTAGTAGATTCGGCTATTTAGGTATGCAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.26

Weight (kDa)

9.18

Isoelectric Point (pI)

30.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 339
AccI GTMKAC 1 cut(s) 354
AcsI RAATTY 2 cut(s) 193, 235
AfiI CCNNNNNNNGG 1 cut(s) 372
AgsI TTSAA 3 cut(s) 198, 260, 273
AluBI AGCT 4 cut(s) 55, 92, 146, 320
AluI AGCT 4 cut(s) 55, 92, 146, 320
Alw26I GTCTC 3 cut(s) 43, 80, 328
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 2 cut(s) 193, 235
AspLEI GCGC 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 214
AsuII TTCGAA 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 250
BbvI GCAGC 1 cut(s) 329
BccI CCATC 4 cut(s) 25, 62, 98, 366
BcoDI GTCTC 3 cut(s) 43, 80, 328
BfmI CTRYAG 1 cut(s) 367
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmsI GCATC 1 cut(s) 160
Bpu14I TTCGAA 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMII CTCAG 2 cut(s) 156, 242
BseRI GAGGAG 4 cut(s) 31, 34, 68, 71
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 1 cut(s) 329
BshFI GGCC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 3 cut(s) 43, 80, 328
BsmBI CGTCTC 2 cut(s) 43, 80
BsnI GGCC 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 250
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 155, 243
BspMAI CTGCAG 1 cut(s) 371
BspT104I TTCGAA 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 175, 367
BstDEI CTNAG 2 cut(s) 142, 251
BstHHI GCGC 1 cut(s) 340
BstMAI GTCTC 3 cut(s) 43, 80, 328
BstMWI GCNNNNNNNGC 2 cut(s) 105, 170
BstNSI RCATGY 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 329
BsuRI GGCC 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 2 cut(s) 175, 367
CfoI GCGC 1 cut(s) 340
CviAII CATG 2 cut(s) 174, 341
CviJI RGCY 9 cut(s) 55, 92, 146, 164, 183, 209, 320, 365, 390
CviKI_1 RGCY 9 cut(s) 55, 92, 146, 164, 183, 209, 320, 365, 390
DdeI CTNAG 2 cut(s) 142, 251
EcoT22I ATGCAT 1 cut(s) 175
Esp3I CGTCTC 2 cut(s) 43, 80
FaeI CATG 2 cut(s) 177, 344
FaiI YATR 4 cut(s) 175, 332, 342, 401
FatI CATG 2 cut(s) 173, 340
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 1 cut(s) 318
Fsp4HI GCNGC 1 cut(s) 318
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 318
HaeIII GGCC 1 cut(s) 164
HhaI GCGC 1 cut(s) 340
Hin1II CATG 2 cut(s) 177, 344
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HinfI GANTC 4 cut(s) 152, 256, 308, 384
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 2 cut(s) 169, 410
Hpy8I GTNNAC 1 cut(s) 355
HpyCH4V TGCA 3 cut(s) 173, 369, 403
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 170
HpyF3I CTNAG 2 cut(s) 142, 251
Hsp92II CATG 2 cut(s) 177, 344
HspAI GCGC 1 cut(s) 338
LpnPI CCDG 4 cut(s) 19, 41, 312, 379
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 7 cut(s) 130, 193, 212, 235, 241, 267, 273
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 9 cut(s) 52, 55, 89, 92, 149, 175, 246, 274, 286
Mph1103I ATGCAT 1 cut(s) 175
MspA1I CMGCKG 1 cut(s) 320
MwoI GCNNNNNNNGC 2 cut(s) 105, 170
NlaIII CATG 2 cut(s) 177, 344
NmuCI GTSAC 1 cut(s) 283
NsbI TGCGCA 1 cut(s) 339
NsiI ATGCAT 1 cut(s) 175
NspI RCATGY 1 cut(s) 177
NspV TTCGAA 1 cut(s) 239
PaeI GCATGC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 4 cut(s) 152, 256, 308, 384
PkrI GCNGC 1 cut(s) 319
PstI CTGCAG 1 cut(s) 371
PvuII CAGCTG 1 cut(s) 320
SatI GCNGC 1 cut(s) 318
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 1 cut(s) 367
SfuI TTCGAA 1 cut(s) 239
SphI GCATGC 1 cut(s) 177
Sse9I AATT 7 cut(s) 130, 193, 212, 235, 241, 267, 273
TaqI TCGA 1 cut(s) 239
TasI AATT 7 cut(s) 130, 193, 212, 235, 241, 267, 273
TfiI GAWTC 4 cut(s) 152, 256, 308, 384
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 283
TspRI CASTG 1 cut(s) 255
XapI RAATTY 2 cut(s) 193, 235
XceI RCATGY 1 cut(s) 177
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.