Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

42886151 .. 42894300

Gene Structure 8150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG293100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGATTCAACCTTTACTGTCAGACAATCTTGGAAATGCATGTCTTACAAGTTTTTTTGTCACCGGAGCCTGGGACCACGCCAAACTTCTGCAGTCTCTAAAGGCATACCAAAATGCTGAAAAAGATGAAAGGATGAAATCTAATCCAGACCTGTACTTTAACTGTGCTACTGTAAACAAATATCTAGAAAACTATGAAATGGCCCTTACTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCAAGAGGATCAAGGGGCCTTGGGCTATCATCTATTGGCAGGTTGGTGTGCGAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCCATTTGGTCGATGATCCGCCTGTTGCTTTGTCAGTTGATGTTGTAAATATGACAGTGAGATTGGATTCTGTTGATGGTCGTCTCCTCCTCAAAGAAGCTGAACGAGTTGATGGCGAGGGATGTTGGTTTCAGGACCCTGGCGTTCTCGATCTGGATAAGAGCTCCAGGGAGAAGCCTTTTCTGTATGAAATTGTGGCAACTGGGCGTAATGGTATGGAAGCCTTTTCATCATCTGTGTTGCTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

197

Amino Acids

21.46

Weight (kDa)

4.59

Isoelectric Point (pI)

24.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	279
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	4 cut(s)	230, 243, 265, 353
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	8, 218
AjnI	CCWGG	4 cut(s)	68, 238, 481, 509
AluBI	AGCT	4 cut(s)	221, 341, 443, 507
AluI	AGCT	4 cut(s)	221, 341, 443, 507
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	3 cut(s)	99, 248, 431
AlwI	GGATC	4 cut(s)	230, 243, 265, 353
AoxI	GGCC	2 cut(s)	201, 265
ApeKI	GCWGC	2 cut(s)	221, 224
AspS9I	GGNCC	4 cut(s)	73, 202, 265, 478
AsuHPI	GGTGA	1 cut(s)	52
AsuNHI	GCTAGC	1 cut(s)	341
AvaII	GGWCC	2 cut(s)	73, 478
BamHI	GGATCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	208, 211
BccI	CCATC	2 cut(s)	413, 449
BciT130I	CCWGG	4 cut(s)	70, 240, 483, 511
BcoDI	GTCTC	3 cut(s)	99, 248, 431
BfaI	CTAG	3 cut(s)	185, 320, 342
BfmI	CTRYAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	279
BisI	GCNGC	2 cut(s)	222, 225
BlsI	GCNGC	2 cut(s)	223, 226
Bme1390I	CCNGG	4 cut(s)	70, 240, 483, 511
Bme18I	GGWCC	2 cut(s)	73, 478
BmgT120I	GGNCC	4 cut(s)	73, 202, 265, 478
BmiI	GGNNCC	5 cut(s)	67, 74, 237, 266, 480
BmrFI	CCNGG	4 cut(s)	70, 240, 483, 511
BmrI	ACTGGG	2 cut(s)	321, 555
BmtI	GCTAGC	1 cut(s)	345
BmuI	ACTGGG	2 cut(s)	321, 555
BpmI	CTGGAG	1 cut(s)	493
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	4 cut(s)	69, 268, 481, 510
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	3 cut(s)	214, 316, 550
BseBI	CCWGG	4 cut(s)	70, 240, 483, 511
BseDI	CCNNGG	4 cut(s)	69, 268, 481, 510
BseGI	GGATG	2 cut(s)	138, 470
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseNI	ACTGG	3 cut(s)	214, 316, 550
BseRI	GAGGAG	2 cut(s)	419, 422
BseXI	GCAGC	2 cut(s)	208, 211
BshFI	GGCC	2 cut(s)	203, 267
BsiHKAI	GWGCWC	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	3 cut(s)	99, 248, 431
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	203, 267
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	4 cut(s)	235, 257, 358, 493
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	2 cut(s)	203, 267
BspLI	GGNNCC	5 cut(s)	67, 74, 237, 266, 480
BspMAI	CTGCAG	1 cut(s)	93
BspMI	ACCTGC	1 cut(s)	279
BspOI	GCTAGC	1 cut(s)	345
BspPI	GGATC	4 cut(s)	230, 243, 265, 353
BspTNI	GGTCTC	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	214, 316, 550
BssECI	CCNNGG	4 cut(s)	69, 268, 481, 510
BssMI	GATC	4 cut(s)	235, 257, 358, 493
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	4 cut(s)	70, 240, 483, 511
Bst4CI	ACNGT	4 cut(s)	18, 164, 172, 400
BstC8I	GCNNGC	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	138, 470
BstKTI	GATC	4 cut(s)	238, 260, 361, 496
BstMAI	GTCTC	3 cut(s)	99, 248, 431
BstMBI	GATC	4 cut(s)	235, 257, 358, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	4 cut(s)	70, 240, 483, 511
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	4 cut(s)	68, 238, 481, 509
BstSFI	CTRYAG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	208, 211
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	203, 267
BtsCI	GGATG	2 cut(s)	138, 470
BtsIMutI	CAGTG	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	343
Cfr13I	GGNCC	4 cut(s)	73, 202, 265, 478
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	39
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	4 cut(s)	237, 259, 360, 495
DpnII	GATC	4 cut(s)	235, 257, 358, 493
DraI	TTTAAA	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	351
Ecl136II	GAGCTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	509
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	73, 478
Eco53kI	GAGCTC	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	507
EcoO109I	RGGNCCY	2 cut(s)	265, 478
EcoRII	CCWGG	4 cut(s)	68, 238, 481, 509
EcoT14I	CCWWGG	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	1 cut(s)	42
FaiI	YATR	7 cut(s)	40, 106, 195, 308, 395, 531, 560
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	1 cut(s)	38
Fnu4HI	GCNGC	2 cut(s)	222, 225
FokI	GGATG	2 cut(s)	145, 477
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	2 cut(s)	222, 225
FspBI	CTAG	3 cut(s)	185, 320, 342
GluI	GCNGC	2 cut(s)	222, 225
GsuI	CTGGAG	1 cut(s)	493
HaeIII	GGCC	2 cut(s)	203, 267
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	1 cut(s)	42
HinfI	GANTC	2 cut(s)	4, 410
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	22, 593
Hpy188III	TCNNGA	6 cut(s)	146, 185, 320, 476, 491, 497
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4III	ACNGT	4 cut(s)	18, 164, 172, 400
HpyCH4V	TGCA	3 cut(s)	38, 91, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	42
Kzo9I	GATC	4 cut(s)	235, 257, 358, 493
LmnI	GCTCC	2 cut(s)	65, 512
Lsp1109I	GCAGC	2 cut(s)	208, 211
MaeI	CTAG	3 cut(s)	185, 320, 342
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	4 cut(s)	237, 259, 360, 495
MboI	GATC	4 cut(s)	235, 257, 358, 493
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	509
MluCI	AATT	1 cut(s)	534
MnlI	CCTC	6 cut(s)	248, 295, 316, 440, 443, 454
Mph1103I	ATGCAT	1 cut(s)	40
MseI	TTAA	2 cut(s)	159, 230
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	4 cut(s)	70, 240, 483, 511
MvaI	CCWGG	4 cut(s)	70, 240, 483, 511
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeII	GATC	4 cut(s)	235, 257, 358, 493
NheI	GCTAGC	1 cut(s)	341
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	5 cut(s)	67, 74, 237, 266, 480
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	40
NspI	RCATGY	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	4, 410
PkrI	GCNGC	2 cut(s)	223, 226
PpuMI	RGGWCCY	1 cut(s)	478
Psp124BI	GAGCTC	1 cut(s)	509
Psp5II	RGGWCCY	1 cut(s)	478
Psp6I	CCWGG	4 cut(s)	68, 238, 481, 509
PspGI	CCWGG	4 cut(s)	68, 238, 481, 509
PspN4I	GGNNCC	5 cut(s)	67, 74, 237, 266, 480
PspPI	GGNCC	4 cut(s)	73, 202, 265, 478
PspPPI	RGGWCCY	1 cut(s)	478
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	159, 230
SatI	GCNGC	2 cut(s)	222, 225
Sau3AI	GATC	4 cut(s)	235, 257, 358, 493
Sau96I	GGNCC	4 cut(s)	73, 202, 265, 478
ScrFI	CCNGG	4 cut(s)	70, 240, 483, 511
SduI	GDGCHC	1 cut(s)	509
SetI	ASST	7 cut(s)	13, 153, 223, 293, 343, 445, 509
SfcI	CTRYAG	1 cut(s)	89
SinI	GGWCC	2 cut(s)	73, 478
Sse9I	AATT	1 cut(s)	534
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	3 cut(s)	185, 320, 342
SstI	GAGCTC	1 cut(s)	509
StyD4I	CCNGG	4 cut(s)	68, 238, 481, 509
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	4 cut(s)	18, 164, 172, 400
TaqI	TCGA	2 cut(s)	354, 492
TasI	AATT	1 cut(s)	534
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	4, 410
Tru1I	TTAA	2 cut(s)	159, 230
Tru9I	TTAA	2 cut(s)	159, 230
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	2 cut(s)	221, 224
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	5 cut(s)	141, 149, 210, 546, 561
TspRI	CASTG	1 cut(s)	405
VpaK11BI	GGWCC	2 cut(s)	73, 478
XbaI	TCTAGA	2 cut(s)	184, 319
XceI	RCATGY	1 cut(s)	42
XspI	CTAG	3 cut(s)	185, 320, 342
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.