Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002845

Physical Location & Seq

Genomic Coordinates Forward (+)

45479568 .. 45482634

Gene Structure 3067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG244300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTGCTTGCCGATGTCGTTATTGTTGTTGTCTTTTTAGCTATTGAGGGGCTTAACTTATTGTGCAGGGTACTGGTCTTGACTATTGGATGGATAATTTTCCTTTCGGCATTCATTCCTGTGCACTTCCTACTCAAAGGCCATGAAAAATTGAGAAAAAATTTAGAGAGATGTTTGGTGGAGTTAATGTGTAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTGAAGTACCATGGACCAAAGCCTAGTATGCGGCCAAAGCAGGTTTTTGTGGCCAATCATACTTCTATGATTGATTTCATCATCCTGGAACAAATGACGGCATTTGCTGTAATTATGCAAAAGCATCCTGGATGGGTTGGATTGTTGCAAAAAACTATTTTGGAGAGTGTGGGATGTATCTGGTTCAATCGTTCAGAATCAAAGGATCGGGAAATTGTTGCGAAGAAATTAAGGGATCATGTGGTGGGGCCTGACAATAACCCTCTCCTTATATTTCCCGAAGGAACTTGTGTAAACAATCACTACACTGTTATGTTTAAGAAGGGTGCATTTGAGCTTGGCTGCTCAGTTTGCCCTGTCGCAATCAAGTACAATAAAATTTTCGTTGATGCATTCTGGAACAGCAGAAAGCAGTCCTTCACAATGCATCTGCTACAGCTTATGACATCATGGGCTGTTGTTTGTGATGTGTGGTATTTGGAGCCCGAAAATATGAAGCCTGGGGAGACTGCCATTGAATTTGCAGAGAGGGTCAGGGACATAATTTCTGTTCGAGCAGGACTTAAGAAGGTCCCATGGGATGGGTATCTGAAATACTCTCGCCCTAGCCCAAAGCATAGAGAGAGGAAGCAACAGAGCTTTGCCGAGTCTATGCTCCGACGCCTTGAGGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004366 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006072 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006638 GO:0006639 GO:0006641 GO:0006651 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010154 GO:0010344 GO:0010876 GO:0012505 GO:0016020 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0019637 GO:0019752 GO:0019915 GO:0021700 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046394 GO:0046460 GO:0046463 GO:0046486 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051235 GO:0052646 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0098827 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

299

Amino Acids

34.42

Weight (kDa)

9.29

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	75 - 197	2.5e-25	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60620
fragaria_vesca	FvH4_2g16380 FvH4_2g16380 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680
malus_domestica	MD00G1083900.v1.1 MD10G1138100.v1.1
prunus_persica	Prupe.8G176600_v2.0.a1 Prupe.8G176600_v2.0.a1 Prupe.8G176600_v2.0.a1
pyrus_communis	pycom05g12970 pycom10g11750
rosa_chinensis	RchiOBHm_Chr6g0280151
rosa_laevigata	RLG00000013081 RLG00000036589
rosa_multiflora	Rmu_sc0002826.1_g000032
rosa_roxburghii	Rroxscaffold_7G00188350
rosa_rugosa	Rorug01G0184800 Rorug04G0199200 Rorug06G0130200 Rorug06G0130300 Rorug06G0215900 Rorug07G0231300
rosa_samantha	Rh2CG447400 Rh6AG240600 Rh6BG202200 Rh6BG202300 Rh6BG244300 Rh6CG245900 Rh6DG237000
rosa_wichuraiana	Rw6G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	253
AccB7I	CCANNNNNTGG	1 cut(s)	803
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	2 cut(s)	435, 465
AcoI	YGGCCR	2 cut(s)	254, 273
AcsI	RAATTY	3 cut(s)	160, 600, 740
AcyI	GRCGYC	1 cut(s)	883
AfaI	GTAC	3 cut(s)	72, 230, 593
AfiI	CCNNNNNNNGG	1 cut(s)	803
AflII	CTTAAG	1 cut(s)	785
AgsI	TTSAA	2 cut(s)	409, 740
AjnI	CCWGG	3 cut(s)	306, 349, 721
AluBI	AGCT	5 cut(s)	41, 195, 559, 661, 861
AluI	AGCT	5 cut(s)	41, 195, 559, 661, 861
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	722
Alw44I	GTGCAC	1 cut(s)	122
AlwI	GGATC	2 cut(s)	435, 465
AoxI	GGCC	4 cut(s)	139, 254, 273, 470
ApaLI	GTGCAC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	564
ApoI	RAATTY	3 cut(s)	160, 600, 740
AspS9I	GGNCC	3 cut(s)	236, 470, 793
AvaII	GGWCC	2 cut(s)	236, 793
BaeGI	GKGCMC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	3 cut(s)	84, 348, 797
BceAI	ACGGC	1 cut(s)	336
BciT130I	CCWGG	3 cut(s)	308, 351, 723
BcoDI	GTCTC	1 cut(s)	722
BfaI	CTAG	2 cut(s)	246, 828
BfmI	CTRYAG	1 cut(s)	656
BfrI	CTTAAG	1 cut(s)	785
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	2 cut(s)	254, 565
BlsI	GCNGC	2 cut(s)	255, 566
Bme1390I	CCNGG	3 cut(s)	308, 351, 723
Bme18I	GGWCC	2 cut(s)	236, 793
BmgT120I	GGNCC	3 cut(s)	236, 470, 793
BmiI	GGNNCC	3 cut(s)	471, 705, 795
BmrFI	CCNGG	3 cut(s)	308, 351, 723
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	4 cut(s)	215, 355, 601, 658
BmuI	ACTGGG	1 cut(s)	225
BsaBI	GATNNNNATC	1 cut(s)	807
BsaHI	GRCGYC	1 cut(s)	883
BsaJI	CCNNGG	3 cut(s)	232, 722, 797
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	803
Bse1I	ACTGG	2 cut(s)	78, 220
Bse8I	GATNNNNATC	1 cut(s)	807
BseBI	CCWGG	3 cut(s)	308, 351, 723
BseDI	CCNNGG	3 cut(s)	232, 722, 797
BseGI	GGATG	6 cut(s)	95, 303, 346, 359, 401, 808
BseJI	GATNNNNATC	1 cut(s)	807
BseLI	CCNNNNNNNGG	1 cut(s)	803
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	2 cut(s)	78, 220
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	551
BsgI	GTGCAG	1 cut(s)	85
BshFI	GGCC	4 cut(s)	141, 256, 275, 472
BsiHKAI	GWGCWC	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	773, 779
BslI	CCNNNNNNNGG	1 cut(s)	803
BsmAI	GTCTC	1 cut(s)	722
BsmFI	GGGAC	2 cut(s)	773, 779
BsmI	GAATGC	2 cut(s)	110, 614
BsnI	GGCC	4 cut(s)	141, 256, 275, 472
Bsp1286I	GDGCHC	2 cut(s)	126, 708
Bsp143I	GATC	2 cut(s)	427, 457
Bsp19I	CCATGG	2 cut(s)	232, 797
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	4 cut(s)	141, 256, 275, 472
BspCNI	CTCAG	1 cut(s)	581
BspLI	GGNNCC	3 cut(s)	471, 705, 795
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	2 cut(s)	435, 465
BspTI	CTTAAG	1 cut(s)	785
BsrI	ACTGG	2 cut(s)	78, 220
BssECI	CCNNGG	3 cut(s)	232, 722, 797
BssMI	GATC	2 cut(s)	427, 457
BssNI	GRCGYC	1 cut(s)	883
BssT1I	CCWWGG	2 cut(s)	232, 797
Bst2UI	CCWGG	3 cut(s)	308, 351, 723
Bst4CI	ACNGT	1 cut(s)	532
BstACI	GRCGYC	1 cut(s)	883
BstAFI	CTTAAG	1 cut(s)	785
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	568
BstDSI	CCRYGG	2 cut(s)	232, 797
BstF5I	GGATG	6 cut(s)	95, 303, 346, 359, 401, 808
BstKTI	GATC	2 cut(s)	430, 460
BstMAI	GTCTC	1 cut(s)	722
BstMBI	GATC	2 cut(s)	427, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 259, 573
BstNI	CCWGG	3 cut(s)	308, 351, 723
BstSCI	CCNGG	3 cut(s)	306, 349, 721
BstSFI	CTRYAG	1 cut(s)	656
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	551
BsuRI	GGCC	4 cut(s)	141, 256, 275, 472
BtgI	CCRYGG	2 cut(s)	232, 797
BtsCI	GGATG	6 cut(s)	95, 303, 346, 359, 401, 808
BtsIMutI	CAGTG	1 cut(s)	528
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	9
Cfr13I	GGNCC	3 cut(s)	236, 470, 793
CseI	GACGC	1 cut(s)	891
Csp6I	GTAC	3 cut(s)	71, 229, 592
CviAII	CATG	5 cut(s)	143, 233, 461, 672, 798
CviQI	GTAC	3 cut(s)	71, 229, 592
DdeI	CTNAG	1 cut(s)	568
DpnI	GATC	2 cut(s)	429, 459
DpnII	GATC	2 cut(s)	427, 457
EaeI	YGGCCR	2 cut(s)	254, 273
Eco130I	CCWWGG	2 cut(s)	232, 797
Eco24I	GRGCYC	1 cut(s)	708
Eco47I	GGWCC	2 cut(s)	236, 793
EcoO109I	RGGNCCY	2 cut(s)	470, 793
EcoRII	CCWGG	3 cut(s)	306, 349, 721
EcoT14I	CCWWGG	2 cut(s)	232, 797
EcoT22I	ATGCAT	2 cut(s)	616, 651
EcoT38I	GRGCYC	1 cut(s)	708
ErhI	CCWWGG	2 cut(s)	232, 797
FaeI	CATG	5 cut(s)	146, 236, 464, 675, 801
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FaqI	GGGAC	2 cut(s)	773, 779
FatI	CATG	5 cut(s)	142, 232, 460, 671, 797
Fnu4HI	GCNGC	2 cut(s)	254, 565
FokI	GGATG	6 cut(s)	102, 290, 333, 366, 408, 815
FriOI	GRGCYC	1 cut(s)	708
Fsp4HI	GCNGC	2 cut(s)	254, 565
FspBI	CTAG	2 cut(s)	246, 828
GluI	GCNGC	2 cut(s)	254, 565
HaeIII	GGCC	4 cut(s)	141, 256, 275, 472
HgaI	GACGC	1 cut(s)	891
Hin1I	GRCGYC	1 cut(s)	883
Hin1II	CATG	5 cut(s)	146, 236, 464, 675, 801
HinfI	GANTC	2 cut(s)	419, 869
Hpy166II	GTNNAC	2 cut(s)	124, 517
Hpy188I	TCNGA	3 cut(s)	418, 813, 881
Hpy188III	TCNNGA	4 cut(s)	79, 431, 500, 619
Hpy8I	GTNNAC	2 cut(s)	124, 517
Hpy99I	CGWCG	1 cut(s)	885
HpyAV	CCTTC	4 cut(s)	497, 538, 649, 784
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4V	TGCA	9 cut(s)	66, 124, 206, 340, 370, 551, 614, 649, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 259, 573
HpyF3I	CTNAG	1 cut(s)	568
Hsp92I	GRCGYC	1 cut(s)	883
Hsp92II	CATG	5 cut(s)	146, 236, 464, 675, 801
Kzo9I	GATC	2 cut(s)	427, 457
LmnI	GCTCC	2 cut(s)	703, 882
Lsp1109I	GCAGC	1 cut(s)	551
LweI	GCATC	4 cut(s)	215, 355, 601, 658
MaeI	CTAG	2 cut(s)	246, 828
MalI	GATC	2 cut(s)	429, 459
MboI	GATC	2 cut(s)	427, 457
MboII	GAAGA	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	126, 708
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	9 cut(s)	96, 149, 160, 333, 435, 449, 600, 740, 765
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	878
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	5 cut(s)	40, 495, 744, 840, 883
Mox20I	TGGCCA	1 cut(s)	275
Mph1103I	ATGCAT	2 cut(s)	616, 651
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	5 cut(s)	54, 185, 452, 540, 786
MslI	CAYNNNNRTG	2 cut(s)	119, 533
Msp20I	TGGCCA	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	785
MspR9I	CCNGG	3 cut(s)	308, 351, 723
Mva1269I	GAATGC	2 cut(s)	110, 614
MvaI	CCWGG	3 cut(s)	308, 351, 723
MwoI	GCNNNNNNNGC	3 cut(s)	250, 259, 573
NcoI	CCATGG	2 cut(s)	232, 797
NdeII	GATC	2 cut(s)	427, 457
NlaIII	CATG	5 cut(s)	146, 236, 464, 675, 801
NlaIV	GGNNCC	3 cut(s)	471, 705, 795
NmeAIII	GCCGAG	1 cut(s)	892
NsiI	ATGCAT	2 cut(s)	616, 651
PctI	GAATGC	2 cut(s)	110, 614
PfeI	GAWTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	803
PfoI	TCCNGGA	2 cut(s)	306, 349
PkrI	GCNGC	2 cut(s)	255, 566
PleI	GAGTC	1 cut(s)	877
PpsI	GAGTC	1 cut(s)	877
PpuMI	RGGWCCY	1 cut(s)	793
Psp5II	RGGWCCY	1 cut(s)	793
Psp6I	CCWGG	3 cut(s)	306, 349, 721
PspGI	CCWGG	3 cut(s)	306, 349, 721
PspN4I	GGNNCC	3 cut(s)	471, 705, 795
PspPI	GGNCC	3 cut(s)	236, 470, 793
PspPPI	RGGWCCY	1 cut(s)	793
RsaI	GTAC	3 cut(s)	72, 230, 593
RsaNI	GTAC	3 cut(s)	71, 229, 592
RseI	CAYNNNNRTG	2 cut(s)	119, 533
SaqAI	TTAA	5 cut(s)	54, 185, 452, 540, 786
SatI	GCNGC	2 cut(s)	254, 565
Sau3AI	GATC	2 cut(s)	427, 457
Sau96I	GGNCC	3 cut(s)	236, 470, 793
SchI	GAGTC	1 cut(s)	878
ScrFI	CCNGG	3 cut(s)	308, 351, 723
SduI	GDGCHC	2 cut(s)	126, 708
SetI	ASST	7 cut(s)	43, 197, 267, 561, 663, 795, 863
SfaNI	GCATC	4 cut(s)	215, 355, 601, 658
SfcI	CTRYAG	1 cut(s)	656
SinI	GGWCC	2 cut(s)	236, 793
SmiMI	CAYNNNNRTG	2 cut(s)	119, 533
SmlI	CTYRAG	2 cut(s)	785, 887
SmoI	CTYRAG	2 cut(s)	785, 887
Sse9I	AATT	9 cut(s)	96, 149, 160, 333, 435, 449, 600, 740, 765
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	2 cut(s)	246, 828
StyD4I	CCNGG	3 cut(s)	306, 349, 721
StyI	CCWWGG	2 cut(s)	232, 797
TaaI	ACNGT	1 cut(s)	532
TaqI	TCGA	1 cut(s)	775
TasI	AATT	9 cut(s)	96, 149, 160, 333, 435, 449, 600, 740, 765
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	5 cut(s)	54, 185, 452, 540, 786
Tru9I	TTAA	5 cut(s)	54, 185, 452, 540, 786
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	1 cut(s)	564
TspDTI	ATGAA	4 cut(s)	103, 159, 289, 731
TspRI	CASTG	1 cut(s)	535
Van91I	CCANNNNNTGG	1 cut(s)	803
Vha464I	CTTAAG	1 cut(s)	785
VneI	GTGCAC	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	236, 793
XapI	RAATTY	3 cut(s)	160, 600, 740
XspI	CTAG	2 cut(s)	246, 828
Zsp2I	ATGCAT	2 cut(s)	616, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.